Publications

2018

  • DOI BibTeX
    E. Torelli, M. Manzano, S.K. Srivastava, R.S. Marks
    DNA origami nanorobot fiber optic genosensor to TMV
    in Biosensors and Bioelectronics, 99(C):209-215, January 2018
    @ARTICLE{Torelli2018,
      title = {DNA origami nanorobot fiber optic genosensor to TMV},
      author = {Torelli, Emanuela and Manzano, Marisa and Srivastava, Sachin K. and Marks, Robert S.},
      year = 2018,
      doi = {10.1016/j.bios.2017.07.051},
      month = jan,
      journal = {Biosensors and Bioelectronics},
      volume = {99},
      number = {C},
      pages = {209--215}
    }
    

2017

  • DOI BibTeX
    D.E. Job, D.A. Dickie, D. Rodriguez, A. Robson, S. Danso, C. Pernet, M.E. Bastin, J.P. Boardman, A.D. Murray, T. Ahearn, G.D. Waiter, R.T. Staff, I.J. Deary, S.D. Shenkin, J.M. Wardlaw
    A brain imaging repository of normal structural MRI across the life course: Brain Images of Normal Subjects (BRAINS)
    in NeuroImage, 144(PB):299-304, January 2017
    @ARTICLE{Job2017,
      title = {A brain imaging repository of normal structural MRI across the life course: Brain Images of Normal Subjects (BRAINS)},
      author = {Job, Dominic E. and Dickie, David Alexander and Rodriguez, David and Robson, Andrew and Danso, Sammy and Pernet, Cyril and Bastin, Mark E. and Boardman, James P. and Murray, Alison D. and Ahearn, Trevor and Waiter, Gordon D. and Staff, Roger T. and Deary, Ian J. and Shenkin, Susan D. and Wardlaw, Joanna M.},
      year = 2017,
      doi = {10.1016/j.neuroimage.2016.01.027},
      month = jan,
      journal = {NeuroImage},
      volume = {144},
      number = {PB},
      pages = {299--304}
    }
    
  • DOI BibTeX
    P.N. Taylor, Y. Wang, M. Kaiser
    Within brain area tractography suggests local modularity using high resolution connectomics
    in Scientific Reports, 7:39859, January 2017
    @ARTICLE{Taylor2017,
      title = {Within brain area tractography suggests local modularity using high resolution connectomics},
      author = {Taylor, Peter N. and Wang, Yujiang and Kaiser, Marcus},
      year = 2017,
      doi = {10.1038/srep39859},
      month = jan,
      journal = {Scientific Reports},
      volume = {7},
      pages = {39859}
    }
    
  • DOI BibTeX
    N. Sinha, J. Dauwels, M. Kaiser, S.S. Cash, M. Brandon Westover, Y. Wang, P.N. Taylor
    Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling
    in Brain, 140(2):319-332, February 2017
    @ARTICLE{Sinha2017,
      title = {Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling},
      author = {Sinha, Nishant and Dauwels, Justin and Kaiser, Marcus and Cash, Sydney S. and Brandon Westover, M. and Wang, Yujiang and Taylor, Peter N.},
      year = 2017,
      doi = {10.1093/brain/aww299},
      month = feb,
      journal = {Brain},
      volume = {140},
      number = {2},
      pages = {319--332}
    }
    
  • DOI BibTeX
    Á. Goñi-Moreno, J. Kim, V. de Lorenzo
    CellShape: A user-friendly image analysis tool for quantitative visualization of bacterial cell factories inside
    in Biotechnology Journal, 12(2):1600323, February 2017
    @ARTICLE{Goni-Moreno2017,
      title = {CellShape: A user-friendly image analysis tool for quantitative visualization of bacterial cell factories inside},
      author = {Goñi-Moreno, Ángel and Kim, Juhyun and de Lorenzo, Víctor},
      year = 2017,
      doi = {10.1002/biot.201600323},
      month = feb,
      journal = {Biotechnology Journal},
      volume = {12},
      number = {2},
      pages = {1600323}
    }
    
  • DOI BibTeX
    R. Bauer, M. Kaiser
    Nonlinear growth: an origin of hub organization in complex networks
    in Royal Society Open Science, 4(3):160691, March 2017
    @ARTICLE{Bauer2017,
      title = {Nonlinear growth: an origin of hub organization in complex networks},
      author = {Bauer, Roman and Kaiser, Marcus},
      year = 2017,
      doi = {10.1098/rsos.160691},
      month = mar,
      journal = {Royal Society Open Science},
      volume = {4},
      number = {3},
      pages = {160691}
    }
    
  • DOI BibTeX
    L.R. Peraza, D. Nesbitt, R.A. Lawson, G.W. Duncan, A.J. Yarnall, T.K. Khoo, M. Kaiser, M.J. Firbank, J.T. O'Brien, R.A. Barker, D.J. Brooks, D.J. Burn, J. Taylor
    Intra- and inter-network functional alterations in Parkinson's disease with mild cognitive impairment
    in Human Brain Mapping, 38(3):1702-1715, March 2017
    @ARTICLE{Peraza2017,
      title = {Intra- and inter-network functional alterations in Parkinson's disease with mild cognitive impairment},
      author = {Peraza, Luis R. and Nesbitt, David and Lawson, Rachael A. and Duncan, Gordon W. and Yarnall, Alison J. and Khoo, Tien K. and Kaiser, Marcus and Firbank, Michael J. and O'Brien, John T. and Barker, Roger A. and Brooks, David J. and Burn, David J. and Taylor, John-Paul},
      year = 2017,
      doi = {10.1002/hbm.23499},
      month = mar,
      journal = {Human Brain Mapping},
      volume = {38},
      number = {3},
      pages = {1702--1715}
    }
    
  • DOI BibTeX
    P. Gamba, K. James, N. Zenkin
    A link between transcription fidelity and pausing in vivo
    in Transcription, 8(2):99-105, March 2017
    @ARTICLE{Gamba2017,
      title = {A link between transcription fidelity and pausing in vivo },
      author = {Gamba, Pamela and James, Katherine and Zenkin, Nikolay},
      year = 2017,
      doi = {10.1080/21541264.2016.1274812},
      month = mar,
      journal = {Transcription},
      volume = {8},
      number = {2},
      pages = {99--105}
    }
    
  • DOI BibTeX
    G. Baier, P.N. Taylor, Y. Wang
    Understanding Epileptiform After-Discharges as Rhythmic Oscillatory Transients
    in Frontiers in Computational Neuroscience, 11, April 2017
    @ARTICLE{Baier2017,
      title = {Understanding Epileptiform After-Discharges as Rhythmic Oscillatory Transients},
      author = {Baier, Gerold and Taylor, Peter N. and Wang, Yujiang},
      year = 2017,
      doi = {10.3389/fncom.2017.00025},
      month = apr,
      journal = {Frontiers in Computational Neuroscience},
      volume = {11}
    
  • DOI BibTeX
    N. Sinha, J. Dauwels, M. Kaiser, S.S. Cash, M. Brandon Westover, Y. Wang, P.N. Taylor
    Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome
    in Brain, 140(5):e31-e31, May 2017
    @ARTICLE{Sinha2017a,
      title = {Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome},
      author = {Sinha, Nishant and Dauwels, Justin and Kaiser, Marcus and Cash, Sydney S. and Brandon Westover, M. and Wang, Yujiang and Taylor, Peter N.},
      year = 2017,
      doi = {10.1093/brain/awx068},
      month = may,
      journal = {Brain},
      volume = {140},
      number = {5},
      pages = {e31--e31}
    }
    
  • DOI BibTeX
    K. James, S.J. Cockell, N. Zenkin
    Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics
    in Methods, 120(C):76-84, May 2017
    @ARTICLE{James2017,
      title = {Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics},
      author = {James, Katherine and Cockell, Simon J. and Zenkin, Nikolay},
      year = 2017,
      doi = {10.1016/j.ymeth.2017.04.016},
      month = may,
      journal = {Methods},
      volume = {120},
      number = {C},
      pages = {76--84}
    }
    
  • DOI BibTeX
    Y. Wang, A.J. Trevelyan, A. Valentin, G. Alarcon, P.N. Taylor, M. Kaiser
    Mechanisms underlying different onset patterns of focal seizures
    in PLOS Computational Biology, 13(5):e1005475, May 2017
    @ARTICLE{Wang2017,
      title = {Mechanisms underlying different onset patterns of focal seizures},
      author = {Wang, Yujiang and Trevelyan, Andrew J and Valentin, Antonio and Alarcon, Gonzalo and Taylor, Peter N and Kaiser, Marcus},
      year = 2017,
      doi = {10.1371/journal.pcbi.1005475},
      month = may,
      journal = {PLOS Computational Biology},
      volume = {13},
      number = {5},
      pages = {e1005475}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, A. Wipat, N. Krasnogor
    CSBB: synthetic biology research at Newcastle University
    in Biochemical Society Transactions, 45(3):781-783, June 2017
    @ARTICLE{Goni-Moreno2017a,
      title = {CSBB: synthetic biology research at Newcastle University},
      author = {Goñi-Moreno, Angel and Wipat, Anil and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1042/BST20160437},
      month = jun,
      journal = {Biochemical Society Transactions},
      volume = {45},
      number = {3},
      pages = {781--783}
    }
    
  • DOI BibTeX
    D. Forrest, K. James, Y. Yuzenkova, N. Zenkin
    Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase
    in Nature Communications, 8:15774, June 2017
    @ARTICLE{Forrest2017,
      title = {Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase},
      author = {Forrest, David and James, Katherine and Yuzenkova, Yulia and Zenkin, Nikolay},
      year = 2017,
      doi = {10.1038/ncomms15774},
      month = jun,
      journal = {Nature Communications},
      volume = {8},
      pages = {15774}
    }
    
  • DOI BibTeX
    A. Garcia-Piquer, J. Bacardit, A. Fornells, E. Golobardes
    Scaling-up multiobjective evolutionary clustering algorithms using stratification
    in Pattern Recognition Letters, 93(C):69-77, July 2017
    @ARTICLE{Garcia-Piquer2016,
      title = {Scaling-up multiobjective evolutionary clustering algorithms using stratification},
      author = {Garcia-Piquer, Alvaro and Bacardit, Jaume and Fornells, Albert and Golobardes, Elisabet},
      year = 2017,
      doi = {10.1016/j.patrec.2016.12.001},
      month = jul,
      journal = {Pattern Recognition Letters},
      volume = {93},
      number = {C},
      pages = {69--77}
    }
    
  • DOI eprint BibTeX
    B. Shirt-Ediss, S. Murillo-Sánchez, K. Ruiz-Mirazo
    Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research
    in Beilstein Journal of Organic Chemistry, 13:1388-1395, July 2017
    @ARTICLE{Shirt-Ediss2017,
      title = {Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research},
      author = {Shirt-Ediss, Ben and Murillo-Sánchez, Sara and Ruiz-Mirazo, Kepa},
      year = 2017,
      doi = {10.3762/bjoc.13.135},
      month = jul,
      journal = {Beilstein Journal of Organic Chemistry},
      volume = {13},
      pages = {1388--1395}
    }
    
  • DOI BibTeX
    Á. Goñi-Moreno, I. Benedetti, J. Kim, V. de Lorenzo
    Deconvolution of Gene Expression Noise into Spatial Dynamics of Transcription Factor–Promoter Interplay
    in ACS Synthetic Biology, 6(7):1359-1369, July 2017
    @ARTICLE{Goni-Moreno2017b,
      title = {Deconvolution of Gene Expression Noise into Spatial Dynamics of Transcription Factor–Promoter Interplay},
      author = {Goñi-Moreno, Ángel and Benedetti, Ilaria and Kim, Juhyun and de Lorenzo, Víctor},
      year = 2017,
      doi = {10.1021/acssynbio.6b00397},
      month = jul,
      journal = {ACS Synthetic Biology},
      volume = {6},
      number = {7},
      pages = {1359--1369}
    }
    
  • DOI code BibTeX
    J. Naylor, H. Fellermann, Y. Ding, W.K. Mohammed, N.S. Jakubovics, J. Mukherjee, C.A. Biggs, P.C. Wright, N. Krasnogor
    Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations
    in ACS Synthetic Biology, 6(7):1194-1210, July 2017
    @ARTICLE{Naylor2017,
      title = {Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations},
      author = {Naylor, Jonathan and Fellermann, Harold and Ding, Yuchun and Mohammed, Waleed K. and Jakubovics, Nicholas S. and Mukherjee, Joy and Biggs, Catherine A. and Wright, Phillip C. and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1021/acssynbio.6b00315},
      month = jul,
      journal = {ACS Synthetic Biology},
      volume = {6},
      number = {7},
      pages = {1194--1210}
    }
    
  • DOI BibTeX
    J. Kozyra, A. Ceccarelli, E. Torelli, A. Lopiccolo, J. Gu, H. Fellermann, U. Stimming, N. Krasnogor
    Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami
    in ACS Synthetic Biology, 6(7):1140-1149, July 2017
    @ARTICLE{Kozyra2017,
      title = {Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami},
      author = {Kozyra, Jerzy and Ceccarelli, Alessandro and Torelli, Emanuela and Lopiccolo, Annunziata and Gu, Jing-Ying and Fellermann, Harold and Stimming, Ulrich and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1021/acssynbio.6b00271},
      month = jul,
      journal = {ACS Synthetic Biology},
      volume = {6},
      number = {7},
      pages = {1140--1149}
    }
    
  • DOI BibTeX
    P.G. Jayathilake, P. Gupta, B. Li, C. Madsen, O. Oyebamiji, R. González-Cabaleiro, S. Rushton, B. Bridgens, D. Swailes, B. Allen, A.S. McGough, P. Zuliani, I.D. Ofiteru, D. Wilkinson, J. Chen, T. Curtis
    A mechanistic Individual-based Model of microbial communities
    in PLOS ONE, 12(8):e0181965, August 2017
    @ARTICLE{Jayathilake2017,
      title = {A mechanistic Individual-based Model of microbial communities},
      author = {Jayathilake, Pahala Gedara and Gupta, Prashant and Li, Bowen and Madsen, Curtis and Oyebamiji, Oluwole and González-Cabaleiro, Rebeca and Rushton, Steve and Bridgens, Ben and Swailes, David and Allen, Ben and McGough, A. Stephen and Zuliani, Paolo and Ofiteru, Irina Dana and Wilkinson, Darren and Chen, Jinju and Curtis, Tom},
      year = 2017,
      doi = {10.1371/journal.pone.0181965},
      month = aug,
      journal = {PLOS ONE},
      volume = {12},
      number = {8},
      pages = {e0181965}
    }
    
  • DOI BibTeX
    M. Kaiser
    Mechanisms of Connectome Development
    in Trends in Cognitive Sciences, 21(9):703-717, September 2017
    @ARTICLE{Kaiser2017,
      title = {Mechanisms of Connectome Development},
      author = {Kaiser, Marcus},
      year = 2017,
      doi = {10.1016/j.tics.2017.05.010},
      month = sep,
      journal = {Trends in Cognitive Sciences},
      volume = {21},
      number = {9},
      pages = {703--717}
    }
    
  • DOI
    N. Lazzarini, J. Runhaar, A.C. Bay-Jensen, C.S. Thudium, S.M. Bierma-Zeinstra, Y. Henrotin, J. Bacardit
    A machine learning approach for the identification of new biomarkers for knee osteoarthritis development in overweight and obese women
    in Osteoarthritis and Cartilage, available online since September 2017
  • DOI BibTeX
    J. García-Betancur, A. Goñi-Moreno, T. Horger, M. Schott, M. Sharan, J. Eikmeier, B. Wohlmuth, A. Zernecke, K. Ohlsen, C. Kuttler, D. Lopez
    Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus
    in eLife, 6, September 2017
    @ARTICLE{Garcia-Betancur2017,
      title = {Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus},
      author = {García-Betancur, Juan-Carlos and Goñi-Moreno, Angel and Horger, Thomas and Schott, Melanie and Sharan, Malvika and Eikmeier, Julian and Wohlmuth, Barbara and Zernecke, Alma and Ohlsen, Knut and Kuttler, Christina and Lopez, Daniel},
      year = 2017,
      doi = {10.7554/eLife.28023},
      month = sep,
      journal = {eLife},
      volume = {6}
    
  • DOI BibTeX
    N. Lazzarini, J. Bacardit
    RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers
    in BMC Bioinformatics, 18(1), December 2017
    @ARTICLE{Lazzarini2017,
      title = {RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers},
      author = {Lazzarini, Nicola and Bacardit, Jaume},
      year = 2017,
      doi = {10.1186/s12859-017-1729-2},
      month = dec,
      journal = {BMC Bioinformatics},
      volume = {18},
      number = {1}
    
  • DOI BibTeX
    S. Baron, N. Lazzarini, J. Bacardit
    Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data
    in Applications of Evolutionary Computation, Lecture Notes in Computer Science 10199, p.125-141, 2017
    @INCOLLECTION{Baron2017,
      title = {Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data},
      author = {Baron, Simon and Lazzarini, Nicola and Bacardit, Jaume},
      year = 2017,
      doi = {10.1007/978-3-319-55849-3_9},
      booktitle = {Applications of Evolutionary Computation},
      publisher = {Springer International Publishing},
      volume = {10199},
      series = {Lecture Notes in Computer Science},
      pages = {125--141}
    }
    
  • DOI eprint BibTeX
    J. Kozyra, H. Fellermann, B. Shirt-Ediss, A. Lopiccolo, N. Krasnogor
    Optimizing nucleic acid sequences for a molecular data recorder
    in Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17, p.1145-1152, Berlin, Germany, 2017
    @INPROCEEDINGS{Kozyra2017a,
      title = {Optimizing nucleic acid sequences for a molecular data recorder},
      author = {Kozyra, Jerzy and Fellermann, Harold and Shirt-Ediss, Ben and Lopiccolo, Annunziata and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1145/3071178.3071345},
      booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference on   - GECCO '17},
      pages = {1145--1152},
      address = {Berlin, Germany}
    }
    

2016

  • DOI BibTeX
    J. Mullen, S.J. Cockell, H. Tipney, P.M. Woollard, A. Wipat
    Mining integrated semantic networks for drug repositioning opportunities
    in PeerJ, 4:e1558, January 2016
    @ARTICLE{Mullen2016,
      title = {Mining integrated semantic networks for drug repositioning opportunities},
      author = {Mullen, Joseph and Cockell, Simon J. and Tipney, Hannah and Woollard, Peter M. and Wipat, Anil},
      year = 2016,
      doi = {10.7717/peerj.1558},
      month = jan,
      journal = {PeerJ},
      volume = {4},
      pages = {e1558}
    }
    
  • DOI BibTeX
    M.A. Franco, J. Bacardit
    Large-scale experimental evaluation of GPU strategies for evolutionary machine learning
    in Information Sciences, 330(C):385-402, February 2016
    @ARTICLE{Franco2015,
      title = {Large-scale experimental evaluation of GPU strategies for evolutionary machine learning},
      author = {Franco, María A. and Bacardit, Jaume},
      year = 2016,
      doi = {10.1016/j.ins.2015.10.025},
      month = feb,
      journal = {Information Sciences},
      volume = {330},
      number = {C},
      pages = {385--402}
    }
    
  • DOI BibTeX
    T.B. Yehezkel, A. Rival, O. Raz, R. Cohen, Z. Marx, M. Camara, J. Dubern, B. Koch, S. Heeb, N. Krasnogor, C. Delattre, E. Shapiro
    Synthesis and cell-free cloning of DNA libraries using programmable microfluidics
    in Nucleic Acids Research, 44(4):e35-e35, February 2016
    @ARTICLE{Yehezkel2015,
      title = {Synthesis and cell-free cloning of DNA libraries using programmable microfluidics},
      author = {Yehezkel, Tuval Ben and Rival, Arnaud and Raz, Ofir and Cohen, Rafael and Marx, Zipora and Camara, Miguel and Dubern, Jean-Frédéric and Koch, Birgit and Heeb, Stephan and Krasnogor, Natalio and Delattre, Cyril and Shapiro, Ehud},
      year = 2016,
      doi = {10.1093/nar/gkv1087},
      month = feb,
      journal = {Nucleic Acids Research},
      volume = {44},
      number = {4},
      pages = {e35--e35}
    }
    
  • DOI BibTeX
    G. Misirli, M. Cavaliere, W. Waites, M. Pocock, C. Madsen, O. Gilfellon, R. Honorato-Zimmer, P. Zuliani, V. Danos, A. Wipat
    Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
    in Bioinformatics, 32(6):908-917, March 2016
    @ARTICLE{Misirli2015,
      title = {Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization},
      author = {Misirli, Goksel and Cavaliere, Matteo and Waites, William and Pocock, Matthew and Madsen, Curtis and Gilfellon, Owen and Honorato-Zimmer, Ricardo and Zuliani, Paolo and Danos, Vincent and Wipat, Anil},
      year = 2016,
      doi = {10.1093/bioinformatics/btv660},
      month = mar,
      journal = {Bioinformatics},
      volume = {32},
      number = {6},
      pages = {908--917}
    }
    
  • DOI BibTeX
    M. Ainsworth, S. Lee, M. Kaiser, J. Simonotto, N.J. Kopell, M.A. Whittington
    GABA B receptor-mediated, layer-specific synaptic plasticity reorganizes gamma-frequency neocortical response to stimulation
    in Proceedings of the National Academy of Sciences, 113(19):E2721-E2729, May 2016
    @ARTICLE{Ainsworth2016,
      title = {GABA B receptor-mediated, layer-specific synaptic plasticity reorganizes gamma-frequency neocortical response to stimulation},
      author = {Ainsworth, Matthew and Lee, Shane and Kaiser, Marcus and Simonotto, Jennifer and Kopell, Nancy J. and Whittington, Miles A.},
      year = 2016,
      doi = {10.1073/pnas.1605243113},
      month = may,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {113},
      number = {19},
      pages = {E2721--E2729}
    }
    
  • DOI BibTeX
    J. Mullen, S.J. Cockell, P. Woollard, A. Wipat
    An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations
    in PLOS ONE, 11(5):e0155811, May 2016
    @ARTICLE{Mullen2016a,
      title = {An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations},
      author = {Mullen, Joseph and Cockell, Simon J. and Woollard, Peter and Wipat, Anil},
      year = 2016,
      doi = {10.1371/journal.pone.0155811},
      month = may,
      journal = {PLOS ONE},
      volume = {11},
      number = {5},
      pages = {e0155811}
    }
    
  • DOI BibTeX
    N. Roehner, J. Beal, K. Clancy, B. Bartley, G. Misirli, R. Grünberg, E. Oberortner, M. Pocock, M. Bissell, C. Madsen, T. Nguyen, M. Zhang, Z. Zhang, Z. Zundel, D. Densmore, J.H. Gennari, A. Wipat, H.M. Sauro, C.J. Myers
    Sharing Structure and Function in Biological Design with SBOL 2.0
    in ACS Synthetic Biology, 5(6):498-506, June 2016
    @ARTICLE{Roehner2016,
      title = {Sharing Structure and Function in Biological Design with SBOL 2.0},
      author = {Roehner, Nicholas and Beal, Jacob and Clancy, Kevin and Bartley, Bryan and Misirli, Goksel and Grünberg, Raik and Oberortner, Ernst and Pocock, Matthew and Bissell, Michael and Madsen, Curtis and Nguyen, Tramy and Zhang, Michael and Zhang, Zhen and Zundel, Zach and Densmore, Douglas and Gennari, John H. and Wipat, Anil and Sauro, Herbert M. and Myers, Chris J.},
      year = 2016,
      doi = {10.1021/acssynbio.5b00215},
      month = jun,
      journal = {ACS Synthetic Biology},
      volume = {5},
      number = {6},
      pages = {498--506}
    }
    
  • DOI BibTeX
    A. Best, K. James, G. Hysenaj, A. Tyson-Capper, D.J. Elliott
    Transformer2 proteins protect breast cancer cells from accumulating replication stress by ensuring productive splicing of checkpoint kinase 1
    in Frontiers of Chemical Science and Engineering, 10(2):186-195, June 2016
    @ARTICLE{Best2015,
      title = {Transformer2 proteins protect breast cancer cells from accumulating replication stress by ensuring productive splicing of checkpoint kinase 1},
      author = {Best, Andrew and James, Katherine and Hysenaj, Gerald and Tyson-Capper, Alison and Elliott, David J.},
      year = 2016,
      doi = {10.1007/s11705-015-1540-4},
      month = jun,
      journal = {Frontiers of Chemical Science and Engineering},
      volume = {10},
      number = {2},
      pages = {186--195}
    }
    
  • DOI BibTeX
    J. Munkley, D. Vodak, K.E. Livermore, K. James, B.T. Wilson, B. Knight, P. Mccullagh, J. Mcgrath, M. Crundwell, L.W. Harries, H.Y. Leung, C.N. Robson, I.G. Mills, P. Rajan, D.J. Elliott
    Glycosylation is an Androgen-Regulated Process Essential for Prostate Cancer Cell Viability
    in EBioMedicine, 8(C):103-116, June 2016
    @ARTICLE{Munkley2016,
      title = {Glycosylation is an Androgen-Regulated Process Essential for Prostate Cancer Cell Viability},
      author = {Munkley, Jennifer and Vodak, Daniel and Livermore, Karen E. and James, Katherine and Wilson, Brian T. and Knight, Bridget and Mccullagh, Paul and Mcgrath, John and Crundwell, Malcolm and Harries, Lorna W. and Leung, Hing Y. and Robson, Craig N. and Mills, Ian G. and Rajan, Prabhakar and Elliott, David J.},
      year = 2016,
      doi = {10.1016/j.ebiom.2016.04.018},
      month = jun,
      journal = {EBioMedicine},
      volume = {8},
      number = {C},
      pages = {103--116}
    }
    
  • DOI BibTeX
    S. Edwin Thanarajah, C.E. Han, A. Rotarska-Jagiela, W. Singer, R. Deichmann, K. Maurer, M. Kaiser, P.J. Uhlhaas
    Abnormal Connectional Fingerprint in Schizophrenia: A Novel Network Analysis of Diffusion Tensor Imaging Data
    in Frontiers in Psychiatry, 7, June 2016
    @ARTICLE{EdwinThanarajah2016,
      title = {Abnormal Connectional Fingerprint in Schizophrenia: A Novel Network Analysis of Diffusion Tensor Imaging Data},
      author = {Edwin Thanarajah, Sharmili and Han, Cheol E. and Rotarska-Jagiela, Anna and Singer, Wolf and Deichmann, Ralf and Maurer, Konrad and Kaiser, Marcus and Uhlhaas, Peter J.},
      year = 2016,
      doi = {10.3389/fpsyt.2016.00114},
      month = jun,
      journal = {Frontiers in Psychiatry},
      volume = {7}
    
  • DOI BibTeX
    A. Manu, Z. Hill, A.H. ten Asbroek, S. Soremekun, B. Weobong, T. Gyan, C. Tawiah-Agyemang, S. Danso, S. Amenga-Etego, S. Owusu-Agyei, B.R. Kirkwood
    Increasing access to care for sick newborns: evidence from the Ghana Newhints cluster-randomised controlled trial
    in BMJ Open, 6(6):e008107, June 2016
    @ARTICLE{Manu2016,
      title = {Increasing access to care for sick newborns: evidence from the Ghana Newhints cluster-randomised controlled trial},
      author = {Manu, Alexander and Hill, Zelee and ten Asbroek, Augustinus HA and Soremekun, Seyi and Weobong, Benedict and Gyan, Thomas and Tawiah-Agyemang, Charlotte and Danso, Samuel and Amenga-Etego, Seeba and Owusu-Agyei, Seth and Kirkwood, Betty R},
      year = 2016,
      doi = {10.1136/bmjopen-2015-008107},
      month = jun,
      journal = {BMJ Open},
      volume = {6},
      number = {6},
      pages = {e008107}
    }
    
  • DOI BibTeX
    L.R. Peraza, S.J. Colloby, L. Deboys, J.T. O'Brien, M. Kaiser, J. Taylor
    Regional functional synchronizations in dementia with Lewy bodies and Alzheimer's disease
    in International Psychogeriatrics, 28(07):1143-1151, July 2016
    @ARTICLE{Peraza2016,
      title = {Regional functional synchronizations in dementia with Lewy bodies and Alzheimer's disease},
      author = {Peraza, Luis R. and Colloby, Sean J. and Deboys, Liam and O'Brien, John T. and Kaiser, Marcus and Taylor, John-Paul},
      year = 2016,
      doi = {10.1017/S1041610216000429},
      month = jul,
      journal = {International Psychogeriatrics},
      volume = {28},
      number = {07},
      pages = {1143--1151}
    }
    
  • DOI BibTeX
    P.N. Taylor, R. Forsyth
    Heterogeneity of trans-callosal structural connectivity and effects on resting state subnetwork integrity may underlie both wanted and unwanted effects of therapeutic corpus callostomy
    in NeuroImage: Clinical, 12(C):341-347, July 2016
    @ARTICLE{Taylor2016,
      title = {Heterogeneity of trans-callosal structural connectivity and effects on resting state subnetwork integrity may underlie both wanted and unwanted effects of therapeutic corpus callostomy},
      author = {Taylor, Peter Neal and Forsyth, Rob},
      year = 2016,
      doi = {10.1016/j.nicl.2016.07.010},
      month = jul,
      journal = {NeuroImage: Clinical},
      volume = {12},
      number = {C},
      pages = {341--347}
    }
    
  • DOI BibTeX
    H. Fellermann, O. Markovitch, O. Gilfellon, C. Madsen, A. Phillips
    Toward Programmable Biology
    in ACS Synthetic Biology, 5(8):793-794, August 2016
    @ARTICLE{Fellermann2016a,
      title = {Toward Programmable Biology},
      author = {Fellermann, Harold and Markovitch, Omer and Gilfellon, Owen and Madsen, Curtis and Phillips, Andrew},
      year = 2016,
      doi = {10.1021/acssynbio.6b00213},
      month = aug,
      journal = {ACS Synthetic Biology},
      volume = {5},
      number = {8},
      pages = {793--794}
    }
    
  • DOI BibTeX
    J.A. McLaughlin, M. Pocock, G. Mısırlı, C. Madsen, A. Wipat
    VisBOL: Web-Based Tools for Synthetic Biology Design Visualization
    in ACS Synthetic Biology, 5(8):874-876, August 2016
    @ARTICLE{McLaughlin2016,
      title = {VisBOL: Web-Based Tools for Synthetic Biology Design Visualization},
      author = {McLaughlin, James Alastair and Pocock, Matthew and Mısırlı, Göksel and Madsen, Curtis and Wipat, Anil},
      year = 2016,
      doi = {10.1021/acssynbio.5b00244},
      month = aug,
      journal = {ACS Synthetic Biology},
      volume = {5},
      number = {8},
      pages = {874--876}
    }
    
  • DOI BibTeX
    D.R. Espeso, E. Martínez-García, V. de Lorenzo, Á. Goñi-Moreno
    Physical Forces Shape Group Identity of Swimming Pseudomonas putida Cells
    in Frontiers in Microbiology, 7, September 2016
    @ARTICLE{Espeso2016,
      title = {Physical Forces Shape Group Identity of Swimming Pseudomonas putida Cells},
      author = {Espeso, David R. and Martínez-García, Esteban and de Lorenzo, Víctor and Goñi-Moreno, Ángel},
      year = 2016,
      doi = {10.3389/fmicb.2016.01437},
      month = sep,
      journal = {Frontiers in Microbiology},
      volume = {7}
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Carcajona, J. Kim, E. Martínez-García, M. Amos, V. de Lorenzo
    An Implementation-Focused Bio/Algorithmic Workflow for Synthetic Biology
    in ACS Synthetic Biology, 5(10):1127-1135, October 2016
    @ARTICLE{Goni-Moreno2016,
      title = {An Implementation-Focused Bio/Algorithmic Workflow for Synthetic Biology},
      author = {Goñi-Moreno, Angel and Carcajona, Marta and Kim, Juhyun and Martínez-García, Esteban and Amos, Martyn and de Lorenzo, Víctor},
      year = 2016,
      doi = {10.1021/acssynbio.6b00029},
      month = oct,
      journal = {ACS Synthetic Biology},
      volume = {5},
      number = {10},
      pages = {1127--1135}
    }
    
  • DOI BibTeX
    N. Miskov-Zivanov, P. Zuliani, Q. Wang, E.M. Clarke, J.R. Faeder
    High-level modeling and verification of cellular signaling
    in 2016 IEEE International High Level Design Validation and Test Workshop (HLDVT), p.162-169, Santa Cruz, CA, USA, October 2016
    @INPROCEEDINGS{Miskov-Zivanov2016,
      title = {High-level modeling and verification of cellular signaling},
      author = {Miskov-Zivanov, Natasa and Zuliani, Paolo and Wang, Qinsi and Clarke, Edmund M. and Faeder, James R.},
      year = 2016,
      doi = {10.1109/HLDVT.2016.7748271},
      month = oct,
      booktitle = {2016 IEEE International High Level Design Validation and Test Workshop (HLDVT)},
      pages = {162--169},
      address = {Santa Cruz, CA, USA}
    }
    
  • DOI BibTeX
    G. Mısırlı, J. Hallinan, M. Pocock, P. Lord, J.A. McLaughlin, H. Sauro, A. Wipat
    Data Integration and Mining for Synthetic Biology Design
    in ACS Synthetic Biology, 5(10):1086-1097, October 2016
    @ARTICLE{Misirli2016,
      title = {Data Integration and Mining for Synthetic Biology Design},
      author = {Mısırlı, Göksel and Hallinan, Jennifer and Pocock, Matthew and Lord, Phillip and McLaughlin, James Alastair and Sauro, Herbert and Wipat, Anil},
      year = 2016,
      doi = {10.1021/acssynbio.5b00295},
      month = oct,
      journal = {ACS Synthetic Biology},
      volume = {5},
      number = {10},
      pages = {1086--1097}
    }
    
  • DOI
    K. James, P. Gamba, S.J. Cockell, N. Zenkin
    Misincorporation by RNA polymerase is a major source of transcription pausing in vivo
    in Nucleic Acids Research, available online since October 2016
  • DOI BibTeX
    Y. Wang, J. Necus, M. Kaiser, B. Mota
    Universality in human cortical folding in health and disease
    in Proceedings of the National Academy of Sciences, 113(45):12820-12825, November 2016
    @ARTICLE{Wang2016,
      title = {Universality in human cortical folding in health and disease},
      author = {Wang, Yujiang and Necus, Joe and Kaiser, Marcus and Mota, Bruno},
      year = 2016,
      doi = {10.1073/pnas.1610175113},
      month = nov,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {113},
      number = {45},
      pages = {12820--12825}
    }
    
  • DOI eprint code BibTeX
    N. Lazzarini, P. Widera, S. Williamson, R. Heer, N. Krasnogor, J. Bacardit
    Functional networks inference from rule-based machine learning models
    in BioData Mining, 9(1), December 2016
    @ARTICLE{Lazzarini2016,
      title = {Functional networks inference from rule-based machine learning models},
      author = {Lazzarini, Nicola and Widera, Paweł and Williamson, Stuart and Heer, Rakesh and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2016,
      doi = {10.1186/s13040-016-0106-4},
      month = dec,
      journal = {BioData Mining},
      volume = {9},
      number = {1}
    
  • DOI BibTeX
    M. Chavarría, Á. Goñi-Moreno, V. de Lorenzo, P.I. Nikel
    A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida
    in mSystems, 1(6):e00154-16, December 2016
    @ARTICLE{Chavarria2016,
      title = {A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida },
      author = {Chavarría, Max and Goñi-Moreno, Ángel and de Lorenzo, Víctor and Nikel, Pablo I.},
      year = 2016,
      doi = {10.1128/mSystems.00154-16},
      month = dec,
      journal = {mSystems},
      volume = {1},
      number = {6},
      pages = {e00154--16}
    }
    
  • DOI BibTeX
    S.O. Danso, D.E. Job, D.R. Gonzalez, D.A. Dickie, J. Palmer, J. Ure, P.M. Bath, P.A.G. Sandercock, J.M. Wardlaw
    Developing an Integrated Image Bank and Metadata for Large-scale Research in Cerebrovascular Disease: Our Experience from the Stroke Image Bank Project
    in Frontiers in ICT, 3, December 2016
    @ARTICLE{Danso2016,
      title = {Developing an Integrated Image Bank and Metadata for Large-scale Research in Cerebrovascular Disease: Our Experience from the Stroke Image Bank Project},
      author = {Danso, Samuel O. and Job, Dominic E. and Gonzalez, David Rodriguez and Dickie, David Alexander and Palmer, Jeb and Ure, Jenny and Bath, Philip M. and Sandercock, Peter A. G. and Wardlaw, Joanna M.},
      year = 2016,
      doi = {10.3389/fict.2016.00032},
      month = dec,
      journal = {Frontiers in ICT},
      volume = {3}
    
  • DOI BibTeX
    E.O. Odei-Lartey, D. Boateng, S. Danso, A. Kwarteng, L. Abokyi, S. Amenga-Etego, S. Gyaase, K.P. Asante, S. Owusu-Agyei
    The application of a biometric identification technique for linking community and hospital data in rural Ghana
    in Global Health Action, 9(1):29854, December 2016
    @ARTICLE{Odei-Lartey2016,
      title = {The application of a biometric identification technique for linking community and hospital data in rural Ghana},
      author = {Odei-Lartey, Eliezer Ofori and Boateng, Dennis and Danso, Samuel and Kwarteng, Anthony and Abokyi, Livesy and Amenga-Etego, Seeba and Gyaase, Stephaney and Asante, Kwaku Poku and Owusu-Agyei, Seth},
      year = 2016,
      doi = {10.3402/gha.v9.29854},
      month = dec,
      journal = {Global Health Action},
      volume = {9},
      number = {1},
      pages = {29854}
    }
    
  • DOI BibTeX
    P.D. Gutiérrez, M. Lastra, J. Bacardit, J.M. Benítez, F. Herrera
    GPU-SME-kNN: Scalable and memory efficient kNN and lazy learning using GPUs
    in Information Sciences, 373(C):165-182, December 2016
    @ARTICLE{Gutierrez2016,
      title = {GPU-SME-kNN: Scalable and memory efficient kNN and lazy learning using GPUs},
      author = {Gutiérrez, Pablo D. and Lastra, Miguel and Bacardit, Jaume and Benítez, José M. and Herrera, Francisco},
      year = 2016,
      doi = {10.1016/j.ins.2016.08.089},
      month = dec,
      journal = {Information Sciences},
      volume = {373},
      number = {C},
      pages = {165--182}
    }
    
  • DOI BibTeX
    L. Anticoli, C. Piazza, L. Taglialegne, P. Zuliani
    Towards Quantum Programs Verification: From Quipper Circuits to QPMC
    in Reversible Computation, Lecture Notes in Computer Science 9720, p.213-219, 2016
    @INCOLLECTION{Anticoli2016,
      title = {Towards Quantum Programs Verification: From Quipper Circuits to QPMC},
      author = {Anticoli, Linda and Piazza, Carla and Taglialegne, Leonardo and Zuliani, Paolo},
      year = 2016,
      doi = {10.1007/978-3-319-40578-0_16},
      booktitle = {Reversible Computation},
      publisher = {Springer International Publishing},
      volume = {9720},
      series = {Lecture Notes in Computer Science},
      pages = {213--219}
    }
    
  • DOI BibTeX
    H. Fellermann, A. Lopiccolo, J. Kozyra, N. Krasnogor
    In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement
    in Unconventional Computation and Natural Computation, Lecture Notes in Computer Science 9726, p.87-98, 2016
    @INCOLLECTION{Fellermann2016,
      title = {In Vitro Implementation of a Stack Data Structure Based on DNA Strand Displacement},
      author = {Fellermann, Harold and Lopiccolo, Annunziata and Kozyra, Jerzy and Krasnogor, Natalio},
      year = 2016,
      doi = {10.1007/978-3-319-41312-9_8},
      booktitle = {Unconventional Computation and Natural Computation},
      publisher = {Springer International Publishing},
      volume = {9726},
      series = {Lecture Notes in Computer Science},
      pages = {87--98}
    }
    
  • DOI BibTeX
    F. Shmarov, P. Zuliani
    Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques
    in Hardware and Software: Verification and Testing, Lecture Notes in Computer Science 10028, p.152-168, 2016
    @INCOLLECTION{Shmarov2016,
      title = {Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques},
      author = {Shmarov, Fedor and Zuliani, Paolo},
      year = 2016,
      doi = {10.1007/978-3-319-49052-6_10},
      booktitle = {Hardware and Software: Verification and Testing},
      publisher = {Springer International Publishing},
      volume = {10028},
      series = {Lecture Notes in Computer Science},
      pages = {152--168}
    }
    

2015

  • DOI BibTeX
    E. Martinez-Garcia, T. Aparicio, A. Goni-Moreno, S. Fraile, V. de Lorenzo
    SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities
    in Nucleic Acids Research, 43(D1):D1183-D1189, January 2015
    @ARTICLE{Martinez-Garcia2015,
      title = {SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities},
      author = {Martinez-Garcia, E. and Aparicio, T. and Goni-Moreno, A. and Fraile, S. and de Lorenzo, V.},
      year = 2015,
      doi = {10.1093/nar/gku1114},
      month = jan,
      journal = {Nucleic Acids Research},
      volume = {43},
      number = {D1},
      pages = {D1183--D1189}
    }
    
  • DOI eprint code BibTeX
    D. Sanassy, P. Widera, N. Krasnogor
    Meta-Stochastic Simulation of Biochemical Models for Systems and Synthetic Biology
    in ACS Synthetic Biology, 4(1):39-47, January 2015
    @ARTICLE{Sanassy2014,
      title = {Meta-Stochastic Simulation of Biochemical Models for Systems and Synthetic Biology},
      author = {Sanassy, Daven and Widera, Paweł and Krasnogor, Natalio},
      year = 2015,
      doi = {10.1021/sb5001406},
      month = jan,
      journal = {ACS Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {39--47}
    }
    
  • DOI BibTeX
    A. Swan, D. Stekel, C. Hodgman, D. Allaway, M. Alqahtani, A. Mobasheri, J. Bacardit
    A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data
    in BMC Genomics, 16(Suppl 1):S2, January 2015
    @ARTICLE{Swan2015,
      title = {A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data},
      author = {Swan, A.L. and Stekel, D.J. and Hodgman, C. and Allaway, D. and Alqahtani, M.H. and Mobasheri, A. and Bacardit, J.},
      year = 2015,
      doi = {10.1186/1471-2164-16-S1-S2},
      month = jan,
      journal = {BMC Genomics},
      volume = {16},
      number = {Suppl 1},
      pages = {S2}
    }
    
  • DOI BibTeX
    S. Konur, M. Gheorghe, C. Dragomir, L. Mierla, F. Ipate, N. Krasnogor
    Qualitative and Quantitative Analysis of Systems and Synthetic Biology Constructs using P Systems
    in ACS Synthetic Biology, 4(1):83-92, January 2015
    @ARTICLE{Konur2015,
      title = {Qualitative and Quantitative Analysis of Systems and Synthetic Biology Constructs using P Systems},
      author = {Konur, Savas and Gheorghe, Marian and Dragomir, Ciprian and Mierla, Laurentiu and Ipate, Florentin and Krasnogor, Natalio},
      year = 2015,
      doi = {10.1021/sb500134w},
      month = jan,
      journal = {ACS Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {83--92}
    }
    
  • DOI BibTeX
    N. Roehner, E. Oberortner, M. Pocock, J. Beal, K. Clancy, C. Madsen, G. Misirli, A. Wipat, H. Sauro, C.J. Myers
    Proposed Data Model for the Next Version of the Synthetic Biology Open Language
    in ACS Synthetic Biology, 4(1):57-71, January 2015
    @ARTICLE{Roehner2014,
      title = {Proposed Data Model for the Next Version of the Synthetic Biology Open Language},
      author = {Roehner, Nicholas and Oberortner, Ernst and Pocock, Matthew and Beal, Jacob and Clancy, Kevin and Madsen, Curtis and Misirli, Goksel and Wipat, Anil and Sauro, Herbert and Myers, Chris J.},
      year = 2015,
      doi = {10.1021/sb500176h},
      month = jan,
      journal = {ACS Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {57--71}
    }
    
  • DOI BibTeX
    I. Triguero, D. Peralta, J. Bacardit, S. García, F. Herrera
    MRPR: A MapReduce solution for prototype reduction in big data classification
    in Neurocomputing, 150(PA):331-345, February 2015
    @ARTICLE{Triguero2014a,
      title = {MRPR: A MapReduce solution for prototype reduction in big data classification},
      author = {Triguero, Isaac and Peralta, Daniel and Bacardit, Jaume and García, Salvador and Herrera, Francisco},
      year = 2015,
      doi = {10.1016/j.neucom.2014.04.078},
      month = feb,
      journal = {Neurocomputing},
      volume = {150},
      number = {PA},
      pages = {331--345}
    }
    
  • DOI BibTeX
    B. Weobong, A.H. ten Asbroek, S. Soremekun, S. Danso, S. Owusu-Agyei, M. Prince, B.R. Kirkwood
    Determinants Of Postnatal Depression In Rural Ghana: Findings From The Don Population Based Cohort Study
    in Depression and Anxiety, 32(2):108-119, February 2015
    @ARTICLE{Weobong2015,
      title = {Determinants Of Postnatal Depression In Rural Ghana: Findings From The Don Population Based Cohort Study},
      author = {Weobong, Benedict and ten Asbroek, Augustinus HA and Soremekun, Seyi and Danso, Samuel and Owusu-Agyei, Seth and Prince, Martin and Kirkwood, Betty R.},
      year = 2015,
      doi = {10.1002/da.22218},
      month = feb,
      journal = {Depression and Anxiety},
      volume = {32},
      number = {2},
      pages = {108--119}
    }
    
  • DOI BibTeX
    S. Lim, M. Kaiser
    Developmental time windows for axon growth influence neuronal network topology
    in Biological Cybernetics, 109(2):275-286, April 2015
    @ARTICLE{Lim2015,
      title = {Developmental time windows for axon growth influence neuronal network topology},
      author = {Lim, Sol and Kaiser, Marcus},
      year = 2015,
      doi = {10.1007/s00422-014-0641-3},
      month = apr,
      journal = {Biological Cybernetics},
      volume = {109},
      number = {2},
      pages = {275--286}
    }
    
  • DOI BibTeX
    P.I. Nikel, F.J. Romero-Campero, J.A. Zeidman, Á. Goñi-Moreno, V. de Lorenzo
    The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor
    in mBio, 6(2):e00340-15, May 2015
    @ARTICLE{Nikel2015,
      title = {The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor},
      author = {Nikel, Pablo I. and Romero-Campero, Francisco J. and Zeidman, Joshua A. and Goñi-Moreno, Ángel and de Lorenzo, Víctor},
      year = 2015,
      doi = {10.1128/mBio.00340-15},
      month = may,
      journal = {mBio},
      volume = {6},
      number = {2},
      pages = {e00340--15}
    }
    
  • DOI BibTeX
    M. Kaiser
    Neuroanatomy: Connectome Connects Fly and Mammalian Brain Networks
    in Current Biology, 25(10):R416-R418, May 2015
    @ARTICLE{Kaiser2015,
      title = {Neuroanatomy: Connectome Connects Fly and Mammalian Brain Networks},
      author = {Kaiser, Marcus},
      year = 2015,
      doi = {10.1016/j.cub.2015.03.039},
      month = may,
      journal = {Current Biology},
      volume = {25},
      number = {10},
      pages = {R416--R418}
    }
    
  • DOI BibTeX
    S. Wook Yoo, C.E. Han, J.S. Shin, S. Won Seo, D.L. Na, M. Kaiser, Y. Jeong, J. Seong
    A Network Flow-based Analysis of Cognitive Reserve in Normal Ageing and Alzheimer’s Disease
    in Scientific Reports, 5:10057, May 2015
    @ARTICLE{WookYoo2015,
      title = {A Network Flow-based Analysis of Cognitive Reserve in Normal Ageing and Alzheimer’s Disease},
      author = {Wook Yoo, Sang and Han, Cheol E. and Shin, Joseph S. and Won Seo, Sang and Na, Duk L. and Kaiser, Marcus and Jeong, Yong and Seong, Joon-Kyung},
      year = 2015,
      doi = {10.1038/srep10057},
      month = may,
      journal = {Scientific Reports},
      volume = {5},
      pages = {10057}
    }
    
  • DOI BibTeX
    L.T. Lui, G. Terrazas, H. Zenil, C. Alexander, N. Krasnogor
    Complexity Measurement Based on Information Theory and Kolmogorov Complexity
    in Artificial Life, 21(2):205-224, May 2015
    @ARTICLE{Lui2015,
      title = {Complexity Measurement Based on Information Theory and Kolmogorov Complexity},
      author = {Lui, Leong Ting and Terrazas, Germán and Zenil, Hector and Alexander, Cameron and Krasnogor, Natalio},
      year = 2015,
      doi = {10.1162/ARTL_a_00157},
      month = may,
      journal = {Artificial Life},
      volume = {21},
      number = {2},
      pages = {205--224}
    }
    
  • DOI BibTeX
    S. Lim, C.E. Han, P.J. Uhlhaas, M. Kaiser
    Preferential Detachment During Human Brain Development: Age- and Sex-Specific Structural Connectivity in Diffusion Tensor Imaging (DTI) Data
    in Cerebral Cortex, 25(6):1477-1489, June 2015
    @ARTICLE{Lim2013,
      title = {Preferential Detachment During Human Brain Development: Age- and Sex-Specific Structural Connectivity in Diffusion Tensor Imaging (DTI) Data},
      author = {Lim, S. and Han, C. E. and Uhlhaas, P. J. and Kaiser, M.},
      year = 2015,
      doi = {10.1093/cercor/bht333},
      month = jun,
      journal = {Cerebral Cortex},
      volume = {25},
      number = {6},
      pages = {1477--1489}
    }
    
  • DOI BibTeX
    R.J. Tomsett, M. Ainsworth, A. Thiele, M. Sanayei, X. Chen, M.A. Gieselmann, M.A. Whittington, M.O. Cunningham, M. Kaiser
    Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue
    in Brain Structure and Function, 220(4):2333-2353, July 2015
    @ARTICLE{Tomsett2015,
      title = {Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue},
      author = {Tomsett, Richard J. and Ainsworth, Matt and Thiele, Alexander and Sanayei, Mehdi and Chen, Xing and Gieselmann, Marc A. and Whittington, Miles A. and Cunningham, Mark O. and Kaiser, Marcus},
      year = 2015,
      doi = {10.1007/s00429-014-0793-x},
      month = jul,
      journal = {Brain Structure and Function},
      volume = {220},
      number = {4},
      pages = {2333--2353}
    }
    
  • DOI BibTeX
    P. Zuliani
    Statistical model checking for biological applications
    in International Journal on Software Tools for Technology Transfer, 17(4):527-536, August 2015
    @ARTICLE{Zuliani2014,
      title = {Statistical model checking for biological applications},
      author = {Zuliani, Paolo},
      year = 2015,
      doi = {10.1007/s10009-014-0343-0},
      month = aug,
      journal = {International Journal on Software Tools for Technology Transfer},
      volume = {17},
      number = {4},
      pages = {527--536}
    }
    
  • DOI BibTeX
    F. Eduati, L.M. Mangravite, T. Wang, H. Tang, J.C. Bare, R. Huang, T. Norman, M. Kellen, M.P. Menden, J. Yang, X. Zhan, R. Zhong, G. Xiao, M. Xia, N. Abdo, O. Kosyk, F. Eduati, L.M. Mangravite, J.C. Bare, T. Norman, M. Kellen, M.P. Menden, S. Friend, G. Stolovitzky, A. Dearry, R.R. Tice, R. Huang, M. Xia, A. Simeonov, N. Abdo, O. Kosyk, I. Rusyn, et al.
    Prediction of human population responses to toxic compounds by a collaborative competition
    in Nature Biotechnology, 33(9):933-940, August 2015
    @ARTICLE{Eduati2015,
      title = {Prediction of human population responses to toxic compounds by a collaborative competition},
      author = {Eduati, Federica and Mangravite, Lara M and Wang, Tao and Tang, Hao and Bare, J Christopher and Huang, Ruili and Norman, Thea and Kellen, Mike and Menden, Michael P and Yang, Jichen and Zhan, Xiaowei and Zhong, Rui and Xiao, Guanghua and Xia, Menghang and Abdo, Nour and Kosyk, Oksana and Eduati, Federica and Mangravite, Lara M and Bare, J Christopher and Norman, Thea and Kellen, Mike and Menden, Michael P and Friend, Stephen and Stolovitzky, Gustavo and Dearry, Allen and Tice, Raymond R and Huang, Ruili and Xia, Menghang and Simeonov, Anton and Abdo, Nour and Kosyk, Oksana and Rusyn, Ivan and Wright, Fred A and Wang, Tao and Tang, Hao and Zhan, Xiaowei and Yang, Jichen and Zhong, Rui and Xiao, Guanghua and Xie, Yang and Tang, Hao and Yang, Jichen and Wang, Tao and Xiao, Guanghua and Xie, Yang and Alaimo, Salvatore and Amadoz, Alicia and Ammad-Ud-din, Muhammad and Azencott, Chloé-Agathe and Bacardit, Jaume and Barron, Pelham and Bernard, Elsa and Beyer, Andreas and Bin, Shao and van Bömmel, Alena and Borgwardt, Karsten and Brys, April M and Caffrey, Brian and Chang, Jeffrey and Chang, Jungsoo and Christodoulou, Eleni G and Clément-Ziza, Mathieu and Cohen, Trevor and Cowherd, Marianne and Demeyer, Sofie and Dopazo, Joaquin and Elhard, Joel D and Falcao, Andre O and Ferro, Alfredo and Friedenberg, David A and Giugno, Rosalba and Gong, Yunguo and Gorospe, Jenni W and Granville, Courtney A and Grimm, Dominik and Heinig, Matthias and Hernansaiz, Rosa D and Hochreiter, Sepp and Huang, Liang-Chin and Huska, Matthew and Jiao, Yunlong and Klambauer, Günter and Kuhn, Michael and Kursa, Miron Bartosz and Kutum, Rintu and Lazzarini, Nicola and Lee, Inhan and Leung, Michael K K and Lim, Weng Khong and Liu, Charlie and López, Felipe Llinares and Mammana, Alessandro and Mayr, Andreas and Michoel, Tom and Mongiovì, Misael and Moore, Jonathan D and Narasimhan, Ravi and Opiyo, Stephen O and Pandey, Gaurav and Peabody, Andrea L and Perner, Juliane and Pulvirenti, Alfredo and Rawlik, Konrad and Reinhardt, Susanne and Riffle, Carol G and Ruderfer, Douglas and Sander, Aaron J and Savage, Richard S and Scornet, Erwan and Sebastian-Leon, Patricia and Sharan, Roded and Simon-Gabriel, Carl Johann and Stoven, Veronique and Sun, Jingchun and Tang, Hao and Teixeira, Ana L and Tenesa, Albert and Vert, Jean-Philippe and Vingron, Martin and Wang, Tao and Walter, Thomas and Whalen, Sean and Wiśniewska, Zofia and Wu, Yonghui and Xiao, Guanghua and Xie, Yang and Xu, Hua and Yang, Jichen and Zhan, Xiaowei and Zhang, Shihua and Zhao, Junfei and Zheng, W Jim and Zhong, Rui and Ziwei, Dai and Friend, Stephen and Dearry, Allen and Simeonov, Anton and Tice, Raymond R and Rusyn, Ivan and Wright, Fred A and Stolovitzky, Gustavo and Xie, Yang and Saez-Rodriguez, Julio},
      year = 2015,
      doi = {10.1038/nbt.3299},
      month = aug,
      journal = {Nature Biotechnology},
      volume = {33},
      number = {9},
      pages = {933--940}
    }
    
  • DOI BibTeX
    B. Weobong, A.H.A. ten Asbroek, S. Soremekun, L. Gram, S. Amenga-Etego, S. Danso, S. Owusu-Agyei, M. Prince, B.R. Kirkwood
    Association between probable postnatal depression and increased infant mortality and morbidity: findings from the DON population-based cohort study in rural Ghana
    in BMJ Open, 5(8):e006509, August 2015
    @ARTICLE{Weobong2015a,
      title = {Association between probable postnatal depression and increased infant mortality and morbidity: findings from the DON population-based cohort study in rural Ghana},
      author = {Weobong, Benedict and ten Asbroek, Augustinus H A and Soremekun, Seyi and Gram, Lu and Amenga-Etego, Seeba and Danso, Samuel and Owusu-Agyei, Seth and Prince, Martin and Kirkwood, Betty R},
      year = 2015,
      doi = {10.1136/bmjopen-2014-006509},
      month = aug,
      journal = {BMJ Open},
      volume = {5},
      number = {8},
      pages = {e006509}
    }
    
  • DOI BibTeX
    C.A. Papasavvas, Y. Wang, A.J. Trevelyan, M. Kaiser
    Gain control through divisive inhibition prevents abrupt transition to chaos in a neural mass model
    in Physical Review E, 92(3), September 2015
    @ARTICLE{Papasavvas2015,
      title = {Gain control through divisive inhibition prevents abrupt transition to chaos in a neural mass model},
      author = {Papasavvas, Christoforos A. and Wang, Yujiang and Trevelyan, Andrew J. and Kaiser, Marcus},
      year = 2015,
      doi = {10.1103/PhysRevE.92.032723},
      month = sep,
      journal = {Physical Review E},
      volume = {92},
      number = {3}
    
  • DOI BibTeX
    L.R. Peraza, J. Taylor, M. Kaiser
    Divergent brain functional network alterations in dementia with Lewy bodies and Alzheimer's disease
    in Neurobiology of Aging, 36(9):2458-2467, September 2015
    @ARTICLE{Peraza2015,
      title = {Divergent brain functional network alterations in dementia with Lewy bodies and Alzheimer's disease},
      author = {Peraza, Luis R. and Taylor, John-Paul and Kaiser, Marcus},
      year = 2015,
      doi = {10.1016/j.neurobiolaging.2015.05.015},
      month = sep,
      journal = {Neurobiology of Aging},
      volume = {36},
      number = {9},
      pages = {2458--2467}
    }
    
  • DOI BibTeX
    H.D. Kjeldsen, M. Kaiser, M.A. Whittington
    Near-field electromagnetic holography for high-resolution analysis of network interactions in neuronal tissue
    in Journal of Neuroscience Methods, 253(C):1-9, September 2015
    @ARTICLE{Kjeldsen2015,
      title = {Near-field electromagnetic holography for high-resolution analysis of network interactions in neuronal tissue},
      author = {Kjeldsen, Henrik D. and Kaiser, Marcus and Whittington, Miles A.},
      year = 2015,
      doi = {10.1016/j.jneumeth.2015.05.016},
      month = sep,
      journal = {Journal of Neuroscience Methods},
      volume = {253},
      number = {C},
      pages = {1--9}
    }
    
  • DOI
    C. Oni, S. Mitchell, K. James, W. Ng, B. Griffiths, V. Hindmarsh, E. Price, C.T. Pease, P. Emery, P. Lanyon, A. Jones, M. Bombardieri, N. Sutcliffe, C. Pitzalis, J. Hunter, M. Gupta, J. McLaren, A. Cooper, M. Regan, I. Giles, D. Isenberg, V. Saravanan, D. Coady, B. Dasgupta, N. McHugh, S. Young-Min, R. Moots, N. Gendi, M. Akil, F. Barone, B. Fisher, S. Rauz, et al.
    Eligibility for clinical trials in primary Sjögren’s syndrome: lessons from the UK Primary Sjögren’s Syndrome Registry
    in Rheumatology, available online since October 2015
  • DOI BibTeX
    Y. Lo, R. O’Dea, J.J. Crofts, C.E. Han, M. Kaiser
    A geometric network model of intrinsic grey-matter connectivity of the human brain
    in Scientific Reports, 5:15397, October 2015
    @ARTICLE{Lo2015,
      title = {A geometric network model of intrinsic grey-matter connectivity of the human brain},
      author = {Lo, Yi-Ping and O’Dea, Reuben and Crofts, Jonathan J. and Han, Cheol E. and Kaiser, Marcus},
      year = 2015,
      doi = {10.1038/srep15397},
      month = oct,
      journal = {Scientific Reports},
      volume = {5},
      pages = {15397}
    }
    
  • DOI BibTeX
    I. Triguero, S. del Río, V. López, J. Bacardit, J.M. Benítez, F. Herrera
    ROSEFW-RF: The winner algorithm for the ECBDL’14 big data competition: An extremely imbalanced big data bioinformatics problem
    in Knowledge-Based Systems, 87(C):69-79, October 2015
    @ARTICLE{Triguero2015,
      title = {ROSEFW-RF: The winner algorithm for the ECBDL’14 big data competition: An extremely imbalanced big data bioinformatics problem},
      author = {Triguero, Isaac and del Río, Sara and López, Victoria and Bacardit, Jaume and Benítez, José M. and Herrera, Francisco},
      year = 2015,
      doi = {10.1016/j.knosys.2015.05.027},
      month = oct,
      journal = {Knowledge-Based Systems},
      volume = {87},
      number = {C},
      pages = {69--79}
    }
    
  • DOI BibTeX
    L.R. Peraza, S.J. Colloby, M.J. Firbank, G.S. Greasy, I.G. McKeith, M. Kaiser, J. O'Brien, J. Taylor
    Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences
    in International Journal of Geriatric Psychiatry, 30(11):1135-1146, November 2015
    @ARTICLE{Peraza2015a,
      title = {Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences},
      author = {Peraza, Luis R. and Colloby, Sean J. and Firbank, Michael J. and Greasy, G. Shirmin and McKeith, Ian G. and Kaiser, Marcus and O'Brien, John and Taylor, John-Paul},
      year = 2015,
      doi = {10.1002/gps.4342},
      month = nov,
      journal = {International Journal of Geriatric Psychiatry},
      volume = {30},
      number = {11},
      pages = {1135--1146}
    }
    
  • DOI BibTeX
    F. Hutchings, C.E. Han, S.S. Keller, B. Weber, P.N. Taylor, M. Kaiser
    Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations
    in PLOS Computational Biology, 11(12):e1004642, December 2015
    @ARTICLE{Hutchings2015,
      title = {Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations},
      author = {Hutchings, Frances and Han, Cheol E. and Keller, Simon S. and Weber, Bernd and Taylor, Peter N. and Kaiser, Marcus},
      year = 2015,
      doi = {10.1371/journal.pcbi.1004642},
      month = dec,
      journal = {PLOS Computational Biology},
      volume = {11},
      number = {12},
      pages = {e1004642}
    }
    
  • DOI BibTeX
    Z. Zhang, T. Nguyen, N. Roehner, G. Misirli, M. Pocock, E. Oberortner, M. Samineni, Z. Zundel, J. Beal, K. Clancy, A. Wipat, C.J. Myers
    libSBOLj 2.0: A Java Library to Support SBOL 2.0
    in IEEE Life Sciences Letters, 1(4):34-37, December 2015
    @ARTICLE{Zhang2015,
      title = {libSBOLj 2.0: A Java Library to Support SBOL 2.0},
      author = {Zhang, Zhen and Nguyen, Tramy and Roehner, Nicholas and Misirli, Goksel and Pocock, Matthew and Oberortner, Ernst and Samineni, Meher and Zundel, Zach and Beal, Jacob and Clancy, Kevin and Wipat, Anil and Myers, Chris J.},
      year = 2015,
      doi = {10.1109/LLS.2016.2546546},
      month = dec,
      journal = {IEEE Life Sciences Letters},
      volume = {1},
      number = {4},
      pages = {34--37}
    }
    
  • DOI BibTeX
    K. James, S. Al-Ali, J. Tarn, S.J. Cockell, C.S. Gillespie, V. Hindmarsh, J. Locke, S. Mitchell, D. Lendrem, S. Bowman, E. Price, C.T. Pease, P. Emery, P. Lanyon, J.A. Hunter, M. Gupta, M. Bombardieri, N. Sutcliffe, C. Pitzalis, J. McLaren, A. Cooper, M. Regan, I. Giles, D. Isenberg, V. Saravanan, D. Coady, B. Dasgupta, N. McHugh, S. Young-Min, R. Moots, N. Gendi, M. Akil, et al.
    A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome
    in PLOS ONE, 10(12):e0143970, December 2015
    @ARTICLE{James2015,
      title = {A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome},
      author = {James, Katherine and Al-Ali, Shereen and Tarn, Jessica and Cockell, Simon J. and Gillespie, Colin S. and Hindmarsh, Victoria and Locke, James and Mitchell, Sheryl and Lendrem, Dennis and Bowman, Simon and Price, Elizabeth and Pease, Colin T. and Emery, Paul and Lanyon, Peter and Hunter, John A. and Gupta, Monica and Bombardieri, Michele and Sutcliffe, Nurhan and Pitzalis, Costantino and McLaren, John and Cooper, Annie and Regan, Marian and Giles, Ian and Isenberg, David and Saravanan, Vadivelu and Coady, David and Dasgupta, Bhaskar and McHugh, Neil and Young-Min, Steven and Moots, Robert and Gendi, Nagui and Akil, Mohammed and Griffiths, Bridget and Wipat, Anil and Newton, Julia and Jones, David E. and Isaacs, John and Hallinan, Jennifer and Ng, Wan-Fai},
      year = 2015,
      doi = {10.1371/journal.pone.0143970},
      month = dec,
      journal = {PLOS ONE},
      volume = {10},
      number = {12},
      pages = {e0143970}
    }
    
  • URL BibTeX
    P.N. Taylor, J. Thomas, N. Sinha, J. Dauwels, M. Kaiser, T. Thesen, J. Ruths
    Optimal control based seizure abatement using patient derived connectivity
    in Frontiers in Neuroscience, 9(202):1, 2015
    @ARTICLE{Taylor2015a,
      title = {Optimal control based seizure abatement using patient derived connectivity},
      author = {Taylor, Peter Neal and Thomas, Jijju and Sinha, Nishant and Dauwels, Justin and Kaiser, Marcus and Thesen, Thomas and Ruths, Justin},
      year = 2015,
      url = {http://journal.frontiersin.org/article/10.3389/fnins.2015.00202/abstract},
      journal = {Frontiers in Neuroscience},
      volume = {9},
      number = {202},
      pages = {1}
    }
    
  • DOI BibTeX
    P.N. Taylor, C.E. Han, J. Schoene-Bake, B. Weber, M. Kaiser
    Structural connectivity changes in temporal lobe epilepsy: Spatial features contribute more than topological measures
    in NeuroImage: Clinical, 8(C):322-328, 2015
    @ARTICLE{Taylor2015,
      title = {Structural connectivity changes in temporal lobe epilepsy: Spatial features contribute more than topological measures},
      author = {Taylor, Peter N. and Han, Cheol E. and Schoene-Bake, Jan-Christoph and Weber, Bernd and Kaiser, Marcus},
      year = 2015,
      doi = {10.1016/j.nicl.2015.02.004},
      journal = {NeuroImage: Clinical},
      volume = {8},
      number = {C},
      pages = {322--328}
    }
    
  • DOI BibTeX
    B. Liu, S. Kong, S. Gao, P. Zuliani, E.M. Clarke
    Towards personalized prostate cancer therapy using delta-reachability analysis
    in Proceedings of the 18th International Conference on Hybrid Systems Computation and Control - HSCC '15, p.227-232, Seattle, Washington, 2015
    @INPROCEEDINGS{Liu2015,
      title = {Towards personalized prostate cancer therapy using delta-reachability analysis},
      author = {Liu, Bing and Kong, Soonho and Gao, Sicun and Zuliani, Paolo and Clarke, Edmund M.},
      year = 2015,
      doi = {10.1145/2728606.2728634},
      booktitle = {Proceedings of the 18th International Conference on Hybrid Systems Computation and Control - HSCC '15},
      pages = {227--232},
      address = {Seattle, Washington}
    }
    
  • BibTeX
    C. Madsen, G. Misirli, M. Pocock, J. Hallinan, A. Wipat
    SBOL Stack: The One-stop-shop for Storing and Publishing Synthetic Biology Designs
    in 7th International Workshop on Bio-Design Automation, p.26-27, Seattle, US, 2015
    @INPROCEEDINGS{Madsen2015,
      title = {SBOL Stack: The One-stop-shop for Storing and Publishing Synthetic Biology Designs},
      author = {Madsen, Curtis and Misirli, Goksel and Pocock, Matthew and Hallinan, Jennifer and Wipat, Anil},
      year = 2015,
      booktitle = {7th International Workshop on Bio-Design Automation},
      pages = {26--27},
      address = {Seattle, US}
    }
    
  • DOI BibTeX
    Q. Wang, P. Zuliani, S. Kong, S. Gao, E.M. Clarke
    SReach: A Probabilistic Bounded Delta-Reachability Analyzer for Stochastic Hybrid Systems
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 9308, p.15-27, 2015
    @INCOLLECTION{Wang2015a,
      title = {SReach: A Probabilistic Bounded Delta-Reachability Analyzer for Stochastic Hybrid Systems},
      author = {Wang, Qinsi and Zuliani, Paolo and Kong, Soonho and Gao, Sicun and Clarke, Edmund M.},
      year = 2015,
      doi = {10.1007/978-3-319-23401-4_3},
      booktitle = {Computational Methods in Systems Biology},
      publisher = {Springer International Publishing},
      volume = {9308},
      series = {Lecture Notes in Computer Science},
      pages = {15--27}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Amos
    DiSCUS: A Simulation Platform for Conjugation Computing
    in Unconventional Computation and Natural Computation, Lecture Notes in Computer Science 9252, p.181-191, 2015
    @INCOLLECTION{Goni-Moreno2015,
      title = {DiSCUS: A Simulation Platform for Conjugation Computing},
      author = {Goñi-Moreno, Angel and Amos, Martyn},
      year = 2015,
      doi = {10.1007/978-3-319-21819-9_13},
      booktitle = {Unconventional Computation and Natural Computation},
      publisher = {Springer International Publishing},
      volume = {9252},
      series = {Lecture Notes in Computer Science},
      pages = {181--191}
    }
    
  • DOI BibTeX
    B. Bartley, J. Beal, K. Clancy, G. Misirli, N. Roehner, E. Oberortner, M. Pocock, M. Bissell, C. Madsen, T. Nguyen, Z. Zhang, J.H. Gennari, C. Myers, A. Wipat, H. Sauro
    Synthetic Biology Open Language (SBOL) Version 2.0.0
    in Journal of Integrative Bioinformatics, 12(2):272, 2015
    @ARTICLE{Bartley2015,
      title = {Synthetic Biology Open Language (SBOL) Version 2.0.0},
      author = {Bartley, Bryan and Beal, Jacob and Clancy, Kevin and Misirli, Goksel and Roehner, Nicholas and Oberortner, Ernst and Pocock, Matthew and Bissell, Michael and Madsen, Curtis and Nguyen, Tramy and Zhang, Zhen and Gennari, John H and Myers, Chris and Wipat, Anil and Sauro, Herbert},
      year = 2015,
      doi = {10.2390/biecoll-jib-2015-272},
      journal = {Journal of Integrative Bioinformatics},
      volume = {12},
      number = {2},
      pages = {272}
    }
    
  • DOI BibTeX
    C. Madsen, F. Shmarov, P. Zuliani
    BioPSy: An SMT-based Tool for Guaranteed Parameter Set Synthesis of Biological Models
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 9308, p.182-194, 2015
    @INCOLLECTION{Madsen2015a,
      title = {BioPSy: An SMT-based Tool for Guaranteed Parameter Set Synthesis of Biological Models},
      author = {Madsen, Curtis and Shmarov, Fedor and Zuliani, Paolo},
      year = 2015,
      doi = {10.1007/978-3-319-23401-4_16},
      booktitle = {Computational Methods in Systems Biology},
      publisher = {Springer International Publishing},
      volume = {9308},
      series = {Lecture Notes in Computer Science},
      pages = {182--194}
    }
    
  • DOI BibTeX
    M. Martínez-Ballesteros, J. Bacardit, A. Troncoso, J.C. Riquelme
    Enhancing the scalability of a genetic algorithm to discover quantitative association rules in large-scale datasets
    in Integrated Computer-Aided Engineering, 22(1):21-39, 2015
    @ARTICLE{Martinez-Ballesteros2015,
      title = {Enhancing the scalability of a genetic algorithm to discover quantitative association rules in large-scale datasets},
      author = {Martínez-Ballesteros, María and Bacardit, Jaume and Troncoso, Alicia and Riquelme, José C},
      year = 2015,
      doi = {10.3233/ICA-140479},
      journal = {Integrated Computer-Aided Engineering},
      volume = {22},
      number = {1},
      pages = {21--39}
    }
    
  • DOI BibTeX
    C. Myers, K. Clancy, G. Misirli, E. Oberortner, M. Pocock, J. Quinn, N. Roehner, H.M. Sauro
    The Synthetic Biology Open Language
    in Computational Methods in Synthetic Biology, Methods in Molecular Biology 1244, p.323-336, 2015
    @INCOLLECTION{Myers2015,
      title = {The Synthetic Biology Open Language},
      author = {Myers, Chris and Clancy, Kevin and Misirli, Goksel and Oberortner, Ernst and Pocock, Matthew and Quinn, Jacqueline and Roehner, Nicholas and Sauro, Herbert M.},
      year = 2015,
      doi = {10.1007/978-1-4939-1878-2_16},
      booktitle = {Computational Methods in Synthetic Biology},
      publisher = {Springer New York},
      volume = {1244},
      series = {Methods in Molecular Biology},
      pages = {323--336}
    }
    
  • BibTeX
    S.O. Danso
    Text Analytics to Predict Time and Cause of Death from Verbal Autopsies
    PhD thesis, University of Leeds, 2015
    @PHDTHESIS{Danso2015,
      title = {Text Analytics to Predict Time and Cause of Death from Verbal Autopsies},
      author = {Danso, Samuel Odei},
      year = 2015,
      school = {University of Leeds}
    }
    
  • DOI BibTeX
    Y. Wang, F. Hutchings, M. Kaiser
    Computational modeling of neurostimulation in brain diseases
    in Computational Neurostimulation, Progress in Brain Research 222, p.191-228, 2015
    @INCOLLECTION{Wang2015,
      title = {Computational modeling of neurostimulation in brain diseases},
      author = {Wang, Yujiang and Hutchings, Frances and Kaiser, Marcus},
      year = 2015,
      doi = {10.1016/bs.pbr.2015.06.012},
      booktitle = {Computational Neurostimulation},
      publisher = {Elsevier},
      volume = {222},
      series = {Progress in Brain Research},
      pages = {191--228}
    }
    
  • DOI BibTeX
    F. Shmarov, P. Zuliani
    ProbReach
    in Proceedings of the 18th International Conference on Hybrid Systems Computation and Control - HSCC '15, p.134-139, Seattle, Washington, 2015
    @INPROCEEDINGS{Shmarov2015,
      title = {ProbReach},
      author = {Shmarov, Fedor and Zuliani, Paolo},
      year = 2015,
      doi = {10.1145/2728606.2728625},
      booktitle = {Proceedings of the 18th International Conference on Hybrid Systems Computation and Control - HSCC '15},
      pages = {134--139},
      address = {Seattle, Washington}
    }
    
  • BibTeX
    O. Gilfellon, G. Misirli, C. Madsen, J. Hallinan, P. Zuliani, A. Wipat
    SynBad: An SVP Design Framework
    in 7th International Workshop on Bio-Design Automation, p.49-50, Seattle, US, 2015
    @INPROCEEDINGS{Gilfellon2015,
      title = {SynBad: An SVP Design Framework},
      author = {Gilfellon, Owen and Misirli, Goksel and Madsen, Curtis and Hallinan, Jennifer and Zuliani, Paolo and Wipat, Anil},
      year = 2015,
      booktitle = {7th International Workshop on Bio-Design Automation},
      pages = {49--50},
      address = {Seattle, US}
    }
    

2014

  • DOI BibTeX
    D. Klein, A. Rotarska-Jagiela, E. Genc, S. Sritharan, H. Mohr, F. Roux, C.E. Han, M. Kaiser, W. Singer, P.J. Uhlhaas
    Adolescent Brain Maturation and Cortical Folding: Evidence for Reductions in Gyrification
    in PLoS ONE, 9(1):e84914, January 2014
    @ARTICLE{Klein2014,
      title = {Adolescent Brain Maturation and Cortical Folding: Evidence for Reductions in Gyrification},
      author = {Klein, Daniel and Rotarska-Jagiela, Anna and Genc, Erhan and Sritharan, Sharmili and Mohr, Harald and Roux, Frederic and Han, Cheol E. and Kaiser, Marcus and Singer, Wolf and Uhlhaas, Peter J.},
      year = 2014,
      doi = {10.1371/journal.pone.0084914},
      month = jan,
      journal = {PLoS ONE},
      volume = {9},
      number = {1},
      pages = {e84914}
    }
    
  • DOI BibTeX
    A. Garcia-Piquer, A. Fornells, J. Bacardit, A. Orriols-Puig, E. Golobardes
    Large-Scale Experimental Evaluation of Cluster Representations for Multiobjective Evolutionary Clustering
    in IEEE Transactions on Evolutionary Computation, 18(1):36-53, February 2014
    @ARTICLE{Garcia-Piquer2014,
      title = {Large-Scale Experimental Evaluation of Cluster Representations for Multiobjective Evolutionary Clustering},
      author = {Garcia-Piquer, Alvaro and Fornells, Albert and Bacardit, Jaume and Orriols-Puig, Albert and Golobardes, Elisabet},
      year = 2014,
      doi = {10.1109/TEVC.2013.2281513},
      month = feb,
      journal = {IEEE Transactions on Evolutionary Computation},
      volume = {18},
      number = {1},
      pages = {36--53}
    }
    
  • DOI BibTeX
    R. Bauer, F. Zubler, A. Hauri, D.R. Muir, R.J. Douglas
    Developmental Origin of Patchy Axonal Connectivity in the Neocortex: A Computational Model
    in Cerebral Cortex, 24(2):487-500, February 2014
    @ARTICLE{Bauer2014,
      title = {Developmental Origin of Patchy Axonal Connectivity in the Neocortex: A Computational Model},
      author = {Bauer, R. and Zubler, F. and Hauri, A. and Muir, D. R. and Douglas, R. J.},
      year = 2014,
      doi = {10.1093/cercor/bhs327},
      month = feb,
      journal = {Cerebral Cortex},
      volume = {24},
      number = {2},
      pages = {487--500}
    }
    
  • DOI BibTeX
    P. Andras
    Function Approximation Using Combined Unsupervised and Supervised Learning
    in IEEE Transactions on Neural Networks and Learning Systems, 25(3):495-505, March 2014
    @ARTICLE{Andras2014,
      title = {Function Approximation Using Combined Unsupervised and Supervised Learning},
      author = {Andras, Peter},
      year = 2014,
      doi = {10.1109/TNNLS.2013.2276044},
      month = mar,
      journal = {IEEE Transactions on Neural Networks and Learning Systems},
      volume = {25},
      number = {3},
      pages = {495--505}
    }
    
  • DOI BibTeX
    M. Courtot, N. Juty, C. Knupfer, D. Waltemath, A. Zhukova, A. Drager, M. Dumontier, A. Finney, M. Golebiewski, J. Hastings, S. Hoops, S. Keating, D.B. Kell, S. Kerrien, J. Lawson, A. Lister, J. Lu, R. Machne, P. Mendes, M. Pocock, N. Rodriguez, A. Villeger, D.J. Wilkinson, S. Wimalaratne, C. Laibe, M. Hucka, N. Le Novere
    Controlled vocabularies and semantics in systems biology
    in Molecular Systems Biology, 7(1):543-543, April 2014
    @ARTICLE{Courtot2014,
      title = {Controlled vocabularies and semantics in systems biology},
      author = {Courtot, M. and Juty, N. and Knupfer, C. and Waltemath, D. and Zhukova, A. and Drager, A. and Dumontier, M. and Finney, A. and Golebiewski, M. and Hastings, J. and Hoops, S. and Keating, S. and Kell, D. B. and Kerrien, S. and Lawson, J. and Lister, A. and Lu, J. and Machne, R. and Mendes, P. and Pocock, M. and Rodriguez, N. and Villeger, A. and Wilkinson, D. J. and Wimalaratne, S. and Laibe, C. and Hucka, M. and Le Novere, N.},
      year = 2014,
      doi = {10.1038/msb.2011.77},
      month = apr,
      journal = {Molecular Systems Biology},
      volume = {7},
      number = {1},
      pages = {543--543}
    }
    
  • DOI BibTeX
    K.A. Koram, S. Amenga-Etego, K. Kayan, K. Osei-Kwakye, K.P. Asante, S. Owusu-Agyei, S. Danso, P. Bilson, D. Adu-Gyasi, E. Mahama, D.K. Dosoo
    Biochemical and Hematologic Parameters for Children in the Middle Belt of Ghana
    in The American Journal of Tropical Medicine and Hygiene, 90(4):767-773, April 2014
    @ARTICLE{Koram2014,
      title = {Biochemical and Hematologic Parameters for Children in the Middle Belt of Ghana},
      author = {Koram, Kwadwo A. and Amenga-Etego, Stephen and Kayan, Kingsley and Osei-Kwakye, Kingsley and Asante, Kwaku P. and Owusu-Agyei, Seth and Danso, Samuel and Bilson, Philip and Adu-Gyasi, Dennis and Mahama, Emmanuel and Dosoo, David K.},
      year = 2014,
      doi = {10.4269/ajtmh.13-0098},
      month = apr,
      journal = {The American Journal of Tropical Medicine and Hygiene},
      volume = {90},
      number = {4},
      pages = {767--773}
    }
    
  • DOI eprint code BibTeX
    C. Winterhalter, P. Widera, N. Krasnogor
    JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks
    in Bioinformatics, 30(7):1029-1030, April 2014
    @ARTICLE{Winterhalter2013,
      title = {JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks},
      author = {Winterhalter, C. and Widera, P. and Krasnogor, N.},
      year = 2014,
      doi = {10.1093/bioinformatics/btt732},
      month = apr,
      journal = {Bioinformatics},
      volume = {30},
      number = {7},
      pages = {1029--1030}
    }
    
  • DOI BibTeX
    V.C. Epa, A.L. Hook, C. Chang, J. Yang, R. Langer, D.G. Anderson, P. Williams, M.C. Davies, M.R. Alexander, D.A. Winkler
    Modelling and Prediction of Bacterial Attachment to Polymers
    in Advanced Functional Materials, 24(14):2085-2093, April 2014
    @ARTICLE{Epa2014,
      title = {Modelling and Prediction of Bacterial Attachment to Polymers},
      author = {Epa, V. C. and Hook, A. L. and Chang, C. and Yang, J. and Langer, R. and Anderson, D. G. and Williams, P. and Davies, M. C. and Alexander, M. R. and Winkler, D. A.},
      year = 2014,
      doi = {10.1002/adfm.201302877},
      month = apr,
      journal = {Advanced Functional Materials},
      volume = {24},
      number = {14},
      pages = {2085--2093}
    }
    
  • DOI BibTeX
    J.S. Hallinan, O. Gilfellon, G. Misirli, A. Wipat
    Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts
    in 2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, p.1-8, Honolulu, HI, USA, May 2014
    @INPROCEEDINGS{Hallinan2014,
      title = {Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts},
      author = {Hallinan, J. S. and Gilfellon, O. and Misirli, G. and Wipat, A.},
      year = 2014,
      doi = {10.1109/CIBCB.2014.6845520},
      month = may,
      booktitle = {2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology},
      pages = {1--8},
      address = {Honolulu, HI, USA}
    }
    
  • DOI BibTeX
    M. Galdzicki, K.P. Clancy, E. Oberortner, M. Pocock, J.Y. Quinn, C.A. Rodriguez, N. Roehner, M.L. Wilson, L. Adam, J.C. Anderson, B.A. Bartley, J. Beal, D. Chandran, J. Chen, D. Densmore, D. Endy, R. Grünberg, J. Hallinan, N.J. Hillson, J.D. Johnson, A. Kuchinsky, M. Lux, G. Misirli, J. Peccoud, H.A. Plahar, E. Sirin, G. Stan, A. Villalobos, A. Wipat, J.H. Gennari, C.J. Myers, H.M. Sauro
    The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
    in Nature Biotechnology, 32(6):545-550, June 2014
    @ARTICLE{Galdzicki2014,
      title = {The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology},
      author = {Galdzicki, Michal and Clancy, Kevin P and Oberortner, Ernst and Pocock, Matthew and Quinn, Jacqueline Y and Rodriguez, Cesar A and Roehner, Nicholas and Wilson, Mandy L and Adam, Laura and Anderson, J Christopher and Bartley, Bryan A and Beal, Jacob and Chandran, Deepak and Chen, Joanna and Densmore, Douglas and Endy, Drew and Grünberg, Raik and Hallinan, Jennifer and Hillson, Nathan J and Johnson, Jeffrey D and Kuchinsky, Allan and Lux, Matthew and Misirli, Goksel and Peccoud, Jean and Plahar, Hector A and Sirin, Evren and Stan, Guy-Bart and Villalobos, Alan and Wipat, Anil and Gennari, John H and Myers, Chris J and Sauro, Herbert M},
      year = 2014,
      doi = {10.1038/nbt.2891},
      month = jun,
      journal = {Nature Biotechnology},
      volume = {32},
      number = {6},
      pages = {545--550}
    }
    
  • DOI BibTeX
    J. Rusakovica, J. Hallinan, A. Wipat, P. Zuliani
    Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features
    in Journal of Integrative Bioinformatics, 11(2):243, June 2014
    @ARTICLE{Rusakovica2014,
      title = {Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features},
      author = {Rusakovica, Julija and Hallinan, Jennifer and Wipat, Anil and Zuliani, Paolo},
      year = 2014,
      doi = {10.2390/biecoll-jib-2014-243},
      month = jun,
      journal = {Journal of Integrative Bioinformatics},
      volume = {11},
      number = {2},
      pages = {243}
    }
    
  • DOI BibTeX
    A.L. Hook, C. Chang, D.J. Scurr, R. Langer, D.G. Anderson, P. Williams, M.C. Davies, M.R. Alexander
    Thermally Switchable Polymers Achieve Controlled Escherichia coli Detachment
    in Advanced Healthcare Materials, 3(7):1020-1025, July 2014
    @ARTICLE{Hook2014,
      title = {Thermally Switchable Polymers Achieve Controlled Escherichia coli Detachment},
      author = {Hook, Andrew L. and Chang, Chien-Yi and Scurr, David J. and Langer, Robert and Anderson, Daniel G. and Williams, Paul and Davies, Martyn C. and Alexander, Morgan R.},
      year = 2014,
      doi = {10.1002/adhm.201300518},
      month = jul,
      journal = {Advanced Healthcare Materials},
      volume = {3},
      number = {7},
      pages = {1020--1025}
    }
    
  • DOI BibTeX
    S. Tanaka, H. Fellermann, S. Rasmussen
    Structure and selection in an autocatalytic binary polymer model
    in EPL (Europhysics Letters), 107(2):28004, July 2014
    @ARTICLE{Tanaka2014,
      title = {Structure and selection in an autocatalytic binary polymer model},
      author = {Tanaka, Shinpei and Fellermann, Harold and Rasmussen, Steen},
      year = 2014,
      doi = {10.1209/0295-5075/107/28004},
      month = jul,
      journal = {EPL (Europhysics Letters)},
      volume = {107},
      number = {2},
      pages = {28004}
    }
    
  • DOI BibTeX
    L. Gram, S. Soremekun, A. ten Asbroek, A. Manu, M. O'Leary, Z. Hill, S. Danso, S. Amenga-Etego, S. Owusu-Agyei, B.R. Kirkwood
    Socio-economic determinants and inequities in coverage and timeliness of early childhood immunisation in rural Ghana
    in Tropical Medicine & International Health, 19(7):802-811, July 2014
    @ARTICLE{Gram2014,
      title = {Socio-economic determinants and inequities in coverage and timeliness of early childhood immunisation in rural Ghana},
      author = {Gram, Lu and Soremekun, Seyi and ten Asbroek, Augustinus and Manu, Alexander and O'Leary, Maureen and Hill, Zelee and Danso, Samuel and Amenga-Etego, Seeba and Owusu-Agyei, Seth and Kirkwood, Betty R.},
      year = 2014,
      doi = {10.1111/tmi.12324},
      month = jul,
      journal = {Tropical Medicine & International Health},
      volume = {19},
      number = {7},
      pages = {802--811}
    }
    
  • DOI BibTeX
    I. Triguero, D. Peralta, J. Bacardit, S. Garcia, F. Herrera
    A combined MapReduce-windowing two-level parallel scheme for evolutionary prototype generation
    in 2014 IEEE Congress on Evolutionary Computation (CEC), p.3036-3043, Beijing, China, July 2014
    @INPROCEEDINGS{Triguero2014,
      title = {A combined MapReduce-windowing two-level parallel scheme for evolutionary prototype generation},
      author = {Triguero, Isaac and Peralta, Daniel and Bacardit, Jaume and Garcia, Salvador and Herrera, Francisco},
      year = 2014,
      doi = {10.1109/CEC.2014.6900490},
      month = jul,
      booktitle = {2014 IEEE Congress on Evolutionary Computation (CEC)},
      pages = {3036--3043},
      address = {Beijing, China}
    }
    
  • DOI BibTeX
    Y. Wang, M. Goodfellow, P.N. Taylor, G. Baier
    Dynamic Mechanisms of Neocortical Focal Seizure Onset
    in PLoS Computational Biology, 10(8):e1003787, August 2014
    @ARTICLE{Wang2014,
      title = {Dynamic Mechanisms of Neocortical Focal Seizure Onset},
      author = {Wang, Yujiang and Goodfellow, Marc and Taylor, Peter Neal and Baier, Gerold},
      year = 2014,
      doi = {10.1371/journal.pcbi.1003787},
      month = aug,
      journal = {PLoS Computational Biology},
      volume = {10},
      number = {8},
      pages = {e1003787}
    }
    
  • DOI BibTeX
    J. Blakes, O. Raz, U. Feige, J. Bacardit, P. Widera, T. Ben-Yehezkel, E. Shapiro, N. Krasnogor
    Heuristic for Maximizing DNA Reuse in Synthetic DNA Library Assembly
    in ACS Synthetic Biology, 3(8):529-542, August 2014
    @ARTICLE{Blakes2014,
      title = {Heuristic for Maximizing DNA Reuse in Synthetic DNA Library Assembly},
      author = {Blakes, Jonathan and Raz, Ofir and Feige, Uriel and Bacardit, Jaume and Widera, Paweł and Ben-Yehezkel, Tuval and Shapiro, Ehud and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1021/sb400161v},
      month = aug,
      journal = {ACS Synthetic Biology},
      volume = {3},
      number = {8},
      pages = {529--542}
    }
    
  • DOI BibTeX
    H. Fellermann, L. Cardelli
    Programming chemistry in DNA-addressable bioreactors
    in Journal of The Royal Society Interface, 11(99):20130987-20130987, August 2014
    @ARTICLE{Fellermann2014b,
      title = {Programming chemistry in DNA-addressable bioreactors},
      author = {Fellermann, H. and Cardelli, L.},
      year = 2014,
      doi = {10.1098/rsif.2013.0987},
      month = aug,
      journal = {Journal of The Royal Society Interface},
      volume = {11},
      number = {99},
      pages = {20130987--20130987}
    }
    
  • DOI BibTeX
    D. Sanassy, H. Fellermann, N. Krasnogor, S. Konur, L.M. Mierla, M. Gheorghe, C. Ladroue, S. Kalvala
    Modelling and Stochastic Simulation of Synthetic Biological Boolean Gates
    in 2014 IEEE Intl Conf on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS), p.404-408, Paris, France, August 2014
    @INPROCEEDINGS{Sanassy2014a,
      title = {Modelling and Stochastic Simulation of Synthetic Biological Boolean Gates},
      author = {Sanassy, Daven and Fellermann, Harold and Krasnogor, Natalio and Konur, Savas and Mierla, Laurentiu M. and Gheorghe, Marian and Ladroue, Christophe and Kalvala, Sara},
      year = 2014,
      doi = {10.1109/HPCC.2014.68},
      month = aug,
      booktitle = {2014 IEEE Intl Conf on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS)},
      pages = {404--408},
      address = {Paris, France}
    }
    
  • DOI BibTeX
    B. Weobong, S. Soremekun, A.H. ten Asbroek, S. Amenga-Etego, S. Danso, S. Owusu-Agyei, M. Prince, B.R. Kirkwood
    Prevalence and determinants of antenatal depression among pregnant women in a predominantly rural population in Ghana: The DON population-based study
    in Journal of Affective Disorders, 165(C):1-7, August 2014
    @ARTICLE{Weobong2014,
      title = {Prevalence and determinants of antenatal depression among pregnant women in a predominantly rural population in Ghana: The DON population-based study},
      author = {Weobong, Benedict and Soremekun, Seyi and ten Asbroek, Augustinus HA and Amenga-Etego, Seeba and Danso, Samuel and Owusu-Agyei, Seth and Prince, Martin and Kirkwood, Betty R.},
      year = 2014,
      doi = {10.1016/j.jad.2014.04.009},
      month = aug,
      journal = {Journal of Affective Disorders},
      volume = {165},
      number = {C},
      pages = {1--7}
    }
    
  • DOI BibTeX
    J.S. Kim, M. Kaiser
    From Caenorhabditis elegans to the human connectome: a specific modular organization increases metabolic, functional and developmental efficiency
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1653):20130529-20130529, September 2014
    @ARTICLE{Kim2014,
      title = {From Caenorhabditis elegans to the human connectome: a specific modular organization increases metabolic, functional and developmental efficiency},
      author = {Kim, J. S. and Kaiser, M.},
      year = 2014,
      doi = {10.1098/rstb.2013.0529},
      month = sep,
      journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
      volume = {369},
      number = {1653},
      pages = {20130529--20130529}
    }
    
  • DOI BibTeX
    A. Best, K. James, C. Dalgliesh, E. Hong, M. Kheirolahi-Kouhestani, T. Curk, Y. Xu, M. Danilenko, R. Hussain, B. Keavney, A. Wipat, R. Klinck, I.G. Cowell, K. Cheong Lee, C.A. Austin, J.P. Venables, B. Chabot, M. Santibanez Koref, A. Tyson-Capper, D.J. Elliott
    Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons
    in Nature Communications, 5:4760, September 2014
    @ARTICLE{Best2014,
      title = {Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons},
      author = {Best, Andrew and James, Katherine and Dalgliesh, Caroline and Hong, Elaine and Kheirolahi-Kouhestani, Mahsa and Curk, Tomaz and Xu, Yaobo and Danilenko, Marina and Hussain, Rafiq and Keavney, Bernard and Wipat, Anil and Klinck, Roscoe and Cowell, Ian G. and Cheong Lee, Ka and Austin, Caroline A. and Venables, Julian P. and Chabot, Benoit and Santibanez Koref, Mauro and Tyson-Capper, Alison and Elliott, David J.},
      year = 2014,
      doi = {10.1038/ncomms5760},
      month = sep,
      journal = {Nature Communications},
      volume = {5},
      pages = {4760}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno
    On genetic logic circuits: forcing digital electronics standards?
    in Memetic Computing, 6(3):149-155, September 2014
    @ARTICLE{Goni-Moreno2014,
      title = {On genetic logic circuits: forcing digital electronics standards?},
      author = {Goñi-Moreno, Angel},
      year = 2014,
      doi = {10.1007/s12293-014-0136-8},
      month = sep,
      journal = {Memetic Computing},
      volume = {6},
      number = {3},
      pages = {149--155}
    }
    
  • DOI BibTeX
    J. Bacardit, P. Widera, N. Lazzarini, N. Krasnogor
    Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example
    in Big Data, 2(3):164-176, September 2014
    @ARTICLE{Bacardit2014,
      title = {Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example},
      author = {Bacardit, Jaume and Widera, Paweł and Lazzarini, Nicola and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1089/big.2014.0023},
      month = sep,
      journal = {Big Data},
      volume = {2},
      number = {3},
      pages = {164--176}
    }
    
  • DOI BibTeX
    G.A. Khoury, A. Liwo, F. Khatib, H. Zhou, G. Chopra, J. Bacardit, L.O. Bortot, R.A. Faccioli, X. Deng, Y. He, P. Krupa, J. Li, M.A. Mozolewska, A.K. Sieradzan, J. Smadbeck, T. Wirecki, S. Cooper, J. Flatten, K. Xu, D. Baker, J. Cheng, A.C.B. Delbem, C.A. Floudas, C. Keasar, M. Levitt, Z. Popović, H.A. Scheraga, J. Skolnick, S.N. Crivelli, F. Players
    WeFold: A coopetition for protein structure prediction
    in Proteins: Structure, Function, and Bioinformatics, 82(9):1850-1868, September 2014
    @ARTICLE{Khoury2014,
      title = {WeFold: A coopetition for protein structure prediction},
      author = {Khoury, George A. and Liwo, Adam and Khatib, Firas and Zhou, Hongyi and Chopra, Gaurav and Bacardit, Jaume and Bortot, Leandro O. and Faccioli, Rodrigo A. and Deng, Xin and He, Yi and Krupa, Pawel and Li, Jilong and Mozolewska, Magdalena A. and Sieradzan, Adam K. and Smadbeck, James and Wirecki, Tomasz and Cooper, Seth and Flatten, Jeff and Xu, Kefan and Baker, David and Cheng, Jianlin and Delbem, Alexandre C. B. and Floudas, Christodoulos A. and Keasar, Chen and Levitt, Michael and Popović, Zoran and Scheraga, Harold A. and Skolnick, Jeffrey and Crivelli, Silvia N. and Players, Foldit},
      year = 2014,
      doi = {10.1002/prot.24538},
      month = sep,
      journal = {Proteins: Structure, Function, and Bioinformatics},
      volume = {82},
      number = {9},
      pages = {1850--1868}
    }
    
  • DOI BibTeX
    M.-. Hutt, M. Kaiser, C.C. Hilgetag
    Perspective: network-guided pattern formation of neural dynamics
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1653):20130522-20130522, September 2014
    @ARTICLE{Hutt2014,
      title = {Perspective: network-guided pattern formation of neural dynamics},
      author = {Hutt, M. -t. and Kaiser, M. and Hilgetag, C. C.},
      year = 2014,
      doi = {10.1098/rstb.2013.0522},
      month = sep,
      journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
      volume = {369},
      number = {1653},
      pages = {20130522--20130522}
    }
    
  • DOI BibTeX
    N. Sinha, P.N. Taylor, J. Dauwels, J. Ruths
    Development of optimal stimuli in a heterogeneous model of epileptic spike-wave oscillations
    in 2014 IEEE International Conference on Systems, Man, and Cybernetics (SMC), p.3160-3165, San Diego, CA, USA, October 2014
    @INPROCEEDINGS{Sinha2014,
      title = {Development of optimal stimuli in a heterogeneous model of epileptic spike-wave oscillations},
      author = {Sinha, Nishant and Taylor, Peter N. and Dauwels, Justin and Ruths, Justin},
      year = 2014,
      doi = {10.1109/SMC.2014.6974414},
      month = oct,
      booktitle = {2014 IEEE International Conference on Systems, Man, and Cybernetics (SMC)},
      pages = {3160--3165},
      address = {San Diego, CA, USA}
    }
    
  • DOI BibTeX
    C.E. Han, L.R. Peraza, J. Taylor, M. Kaiser
    Predicting age across human lifespan based on structural connectivity from diffusion tensor imaging
    in 2014 IEEE Biomedical Circuits and Systems Conference (BioCAS) Proceedings, p.137-140, Lausanne, Switzerland, October 2014
    @INPROCEEDINGS{Han2014,
      title = {Predicting age across human lifespan based on structural connectivity from diffusion tensor imaging},
      author = {Han, Cheol E. and Peraza, Luis R. and Taylor, John-Paul and Kaiser, Marcus},
      year = 2014,
      doi = {10.1109/BioCAS.2014.6981664},
      month = oct,
      booktitle = {2014 IEEE Biomedical Circuits and Systems Conference (BioCAS) Proceedings},
      pages = {137--140},
      address = {Lausanne, Switzerland}
    }
    
  • DOI BibTeX
    D.J. Gibbs, J. Bacardit, A. Bachmair, M.J. Holdsworth
    The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions
    in Trends in Cell Biology, 24(10):603-611, October 2014
    @ARTICLE{Gibbs2014,
      title = {The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions},
      author = {Gibbs, Daniel J. and Bacardit, Jaume and Bachmair, Andreas and Holdsworth, Michael J.},
      year = 2014,
      doi = {10.1016/j.tcb.2014.05.001},
      month = oct,
      journal = {Trends in Cell Biology},
      volume = {24},
      number = {10},
      pages = {603--611}
    }
    
  • DOI BibTeX
    P.N. Taylor, M. Kaiser, J. Dauwels
    Structural connectivity based whole brain modelling in epilepsy
    in Journal of Neuroscience Methods, 236(C):51-57, October 2014
    @ARTICLE{Taylor2014a,
      title = {Structural connectivity based whole brain modelling in epilepsy},
      author = {Taylor, Peter Neal and Kaiser, Marcus and Dauwels, Justin},
      year = 2014,
      doi = {10.1016/j.jneumeth.2014.08.010},
      month = oct,
      journal = {Journal of Neuroscience Methods},
      volume = {236},
      number = {C},
      pages = {51--57}
    }
    
  • DOI BibTeX
    S. Konur, M. Gheorge, C. Dragomir, F. Ipate, N. Krasnogor
    Conventional verification for unconventional computing: a genetic XOR gate example
    in Fundamenta Informaticae, 134(1-2):97-110, November 2014
    @ARTICLE{Konur2014,
      title = {Conventional verification for unconventional computing: a genetic XOR gate example},
      author = {Konur, Savas and Gheorge, Marian and Dragomir, Ciprian and Ipate, Florin and Krasnogor, Natalio},
      year = 2014,
      doi = {10.3233/FI-2014-1093},
      month = nov,
      journal = {Fundamenta Informaticae},
      volume = {134},
      number = {1-2},
      pages = {97--110}
    }
    
  • DOI
    I. Contreras, I. Arnaldo, N. Krasnogor, J.I. Hidalgo
    Blind optimisation problem instance classification via enhanced universal similarity metric
    in Memetic Computing, available online since November 2014
  • DOI BibTeX
    R. Bauer, M. Kaiser, E. Stoll
    A Computational Model Incorporating Neural Stem Cell Dynamics Reproduces Glioma Incidence across the Lifespan in the Human Population
    in PLoS ONE, 9(11):e111219, November 2014
    @ARTICLE{Bauer2014a,
      title = {A Computational Model Incorporating Neural Stem Cell Dynamics Reproduces Glioma Incidence across the Lifespan in the Human Population},
      author = {Bauer, Roman and Kaiser, Marcus and Stoll, Elizabeth},
      year = 2014,
      doi = {10.1371/journal.pone.0111219},
      month = nov,
      journal = {PLoS ONE},
      volume = {9},
      number = {11},
      pages = {e111219}
    }
    
  • DOI BibTeX
    J.C. Chaplin, N. Krasnogor, N.A. Russell
    Photochromic molecular implementations of universal computation
    in Biosystems, 126(C):12-26, December 2014
    @ARTICLE{Chaplin2014,
      title = {Photochromic molecular implementations of universal computation},
      author = {Chaplin, Jack C. and Krasnogor, Natalio and Russell, Noah A.},
      year = 2014,
      doi = {10.1016/j.biosystems.2014.09.004},
      month = dec,
      journal = {Biosystems},
      volume = {126},
      number = {C},
      pages = {12--26}
    }
    
  • DOI BibTeX
    C. Madsen, Z. Zhang, N. Roehner, C. Winstead, C. Myers
    Stochastic Model Checking of Genetic Circuits
    in ACM Journal on Emerging Technologies in Computing Systems, 11(3):1-21, December 2014
    @ARTICLE{Madsen2014,
      title = {Stochastic Model Checking of Genetic Circuits},
      author = {Madsen, Curtis and Zhang, Zhen and Roehner, Nicholas and Winstead, Chris and Myers, Chris},
      year = 2014,
      doi = {10.1145/2644817},
      month = dec,
      journal = {ACM Journal on Emerging Technologies in Computing Systems},
      volume = {11},
      number = {3},
      pages = {1--21}
    }
    
  • DOI BibTeX
    H. Fellermann, M. Hadorn, R.M. Füchslin, N. Krasnogor
    Formalizing Modularization and Data Hiding in Synthetic Biology
    in ACM Journal on Emerging Technologies in Computing Systems, 11(3):1-20, December 2014
    @ARTICLE{Fellermann2014,
      title = {Formalizing Modularization and Data Hiding in Synthetic Biology},
      author = {Fellermann, Harold and Hadorn, Maik and Füchslin, Rudolf M. and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1145/2667231},
      month = dec,
      journal = {ACM Journal on Emerging Technologies in Computing Systems},
      volume = {11},
      number = {3},
      pages = {1--20}
    }
    
  • DOI BibTeX
    G. Misirli, J. Hallinan, A. Wipat
    Composable Modular Models for Synthetic Biology
    in ACM Journal on Emerging Technologies in Computing Systems, 11(3):1-19, December 2014
    @ARTICLE{Misirli2014a,
      title = {Composable Modular Models for Synthetic Biology},
      author = {Misirli, Goksel and Hallinan, Jennifer and Wipat, Anil},
      year = 2014,
      doi = {10.1145/2631921},
      month = dec,
      journal = {ACM Journal on Emerging Technologies in Computing Systems},
      volume = {11},
      number = {3},
      pages = {1--19}
    }
    
  • DOI BibTeX
    C.J. Myers, H. Sauro, A. Wipat
    Introduction to the Special Issue on Computational Synthetic Biology
    in ACM Journal on Emerging Technologies in Computing Systems, 11(3):1-5, December 2014
    @ARTICLE{Myers2014,
      title = {Introduction to the Special Issue on Computational Synthetic Biology},
      author = {Myers, Chris J. and Sauro, Herbert and Wipat, Anil},
      year = 2014,
      doi = {10.1145/2668126},
      month = dec,
      journal = {ACM Journal on Emerging Technologies in Computing Systems},
      volume = {11},
      number = {3},
      pages = {1--5}
    }
    
  • DOI BibTeX
    R. Bauer, F. Zubler, S. Pfister, A. Hauri, M. Pfeiffer, D.R. Muir, R.J. Douglas
    Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks
    in PLoS Computational Biology, 10(12):e1003994, December 2014
    @ARTICLE{Bauer2014b,
      title = {Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks},
      author = {Bauer, Roman and Zubler, Frédéric and Pfister, Sabina and Hauri, Andreas and Pfeiffer, Michael and Muir, Dylan R. and Douglas, Rodney J.},
      year = 2014,
      doi = {10.1371/journal.pcbi.1003994},
      month = dec,
      journal = {PLoS Computational Biology},
      volume = {10},
      number = {12},
      pages = {e1003994}
    }
    
  • DOI BibTeX
    M.M. Alkurashi, S.T. May, K. Kong, J. Bacardit, D. Haig, H.M. Elsheikha
    Susceptibility to experimental infection of the invertebrate locusts ( Schistocerca gregaria ) with the apicomplexan parasite Neospora caninum
    in PeerJ, 2:e674, December 2014
    @ARTICLE{Alkurashi2014,
      title = {Susceptibility to experimental infection of the invertebrate locusts ( Schistocerca gregaria ) with the apicomplexan parasite Neospora caninum },
      author = {Alkurashi, Mamdowh M. and May, Sean T. and Kong, Kenny and Bacardit, Jaume and Haig, David and Elsheikha, Hany M.},
      year = 2014,
      doi = {10.7717/peerj.674},
      month = dec,
      journal = {PeerJ},
      volume = {2},
      pages = {e674}
    }
    
  • DOI BibTeX
    P.N. Taylor, Y. Wang, M. Goodfellow, J. Dauwels, F. Moeller, U. Stephani, G. Baier
    A Computational Study of Stimulus Driven Epileptic Seizure Abatement
    in PLoS ONE, 9(12):e114316, December 2014
    @ARTICLE{Taylor2014,
      title = {A Computational Study of Stimulus Driven Epileptic Seizure Abatement},
      author = {Taylor, Peter Neal and Wang, Yujiang and Goodfellow, Marc and Dauwels, Justin and Moeller, Friederike and Stephani, Ulrich and Baier, Gerold},
      year = 2014,
      doi = {10.1371/journal.pone.0114316},
      month = dec,
      journal = {PLoS ONE},
      volume = {9},
      number = {12},
      pages = {e114316}
    }
    
  • DOI BibTeX
    L.R. Peraza, M. Kaiser, M. Firbank, S. Graziadio, L. Bonanni, M. Onofrj, S.J. Colloby, A. Blamire, J. O'Brien, J. Taylor
    fMRI resting state networks and their association with cognitive fluctuations in dementia with Lewy bodies
    in NeuroImage: Clinical, 4(C):558-565, 2014
    @ARTICLE{Peraza2014,
      title = {fMRI resting state networks and their association with cognitive fluctuations in dementia with Lewy bodies},
      author = {Peraza, Luis R. and Kaiser, Marcus and Firbank, Michael and Graziadio, Sara and Bonanni, Laura and Onofrj, Marco and Colloby, Sean J. and Blamire, Andrew and O'Brien, John and Taylor, John-Paul},
      year = 2014,
      doi = {10.1016/j.nicl.2014.03.013},
      journal = {NeuroImage: Clinical},
      volume = {4},
      number = {C},
      pages = {558--565}
    }
    
  • DOI BibTeX
    B. Liu, S. Kong, S. Gao, P. Zuliani, E.M. Clarke
    Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 8859, p.99-113, 2014
    @INCOLLECTION{Liu2014,
      title = {Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions},
      author = {Liu, Bing and Kong, Soonho and Gao, Sicun and Zuliani, Paolo and Clarke, Edmund M.},
      year = 2014,
      doi = {10.1007/978-3-319-12982-2_8},
      booktitle = {Computational Methods in Systems Biology},
      publisher = {Springer International Publishing},
      volume = {8859},
      series = {Lecture Notes in Computer Science},
      pages = {99--113}
    }
    
  • DOI BibTeX
    R. Gross, I. Fouxon, D. Lancet, O. Markovitch
    Quasispecies in population of compositional assemblies
    in BMC Evolutionary Biology, 14(1):265, 2014
    @ARTICLE{Gross2014,
      title = {Quasispecies in population of compositional assemblies},
      author = {Gross, Renan and Fouxon, Itzhak and Lancet, Doron and Markovitch, Omer},
      year = 2014,
      doi = {10.1186/s12862-014-0265-1},
      journal = {BMC Evolutionary Biology},
      volume = {14},
      number = {1},
      pages = {265}
    }
    
  • DOI BibTeX
    H. Fellermann, N. Krasnogor
    Chemical Production and Molecular Computing in Addressable Reaction Compartments
    in Language, Life, Limits, Lecture Notes in Computer Science 8493, p.173-182, 2014
    @INCOLLECTION{Fellermann2014a,
      title = {Chemical Production and Molecular Computing in Addressable Reaction Compartments},
      author = {Fellermann, Harold and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1007/978-3-319-08019-2_18},
      booktitle = {Language, Life, Limits},
      publisher = {Springer International Publishing},
      volume = {8493},
      series = {Lecture Notes in Computer Science},
      pages = {173--182}
    }
    
  • URL BibTeX
    G. Misirli, J. Hallinan, R. Röttger, J. Baumbach, A. Wipat
    BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species
    in Journal of Integrative Bioinformatics, 11(2):244, 2014
    @ARTICLE{Misirli2014,
      title = {BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species},
      author = {Misirli, G. and Hallinan, J. and Röttger, R. and Baumbach, J. and Wipat, A.},
      year = 2014,
      url = {http://journal.imbio.de/article.php?aid=244},
      journal = {Journal of Integrative Bioinformatics},
      volume = {11},
      number = {2},
      pages = {244}
    }
    
  • DOI BibTeX
    J. Blakes, J. Twycross, S. Konur, F.J. Romero-Campero, N. Krasnogor, M. Gheorghe
    Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology
    in Applications of Membrane Computing in Systems and Synthetic Biology, Emergence, Complexity and Computation 7, p.1-41, 2014
    @INCOLLECTION{Blakes2014a,
      title = {Infobiotics Workbench: A P Systems Based Tool for Systems and Synthetic Biology},
      author = {Blakes, Jonathan and Twycross, Jamie and Konur, Savas and Romero-Campero, Francisco Jose and Krasnogor, Natalio and Gheorghe, Marian},
      year = 2014,
      doi = {10.1007/978-3-319-03191-0_1},
      booktitle = {Applications of Membrane Computing in Systems and Synthetic Biology},
      publisher = {Springer International Publishing},
      volume = {7},
      series = {Emergence, Complexity and Computation},
      pages = {1--41}
    }
    
  • BibTeX
    S. Danso, E. Atwell, O. Johnson
    A comparative study of machine learning methods for verbal autopsy text classification
    in arXiv preprint arXiv:1402.4380, 8(1):1-8, 2014
    @ARTICLE{Danso2014,
      title = {A comparative study of machine learning methods for verbal autopsy text classification},
      author = {Danso, Samuel and Atwell, Eric and Johnson, Owen},
      year = 2014,
      journal = {arXiv preprint arXiv:1402.4380},
      volume = {8},
      number = {1},
      pages = {1--8}
    }
    
  • S. Danso, W. Lamb
    Developing an automatic part-of-speech tagger for scottish gaelic
    in CLTW 2014, available online since 2014

2013

  • DOI BibTeX
    J. Bacardit, X. Llorà
    Large-scale data mining using genetics-based machine learning
    in Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 3(1):37-61, January 2013
    @ARTICLE{Bacardit2013,
      title = {Large-scale data mining using genetics-based machine learning},
      author = {Bacardit, Jaume and Llorà, Xavier},
      year = 2013,
      doi = {10.1002/widm.1078},
      month = jan,
      journal = {Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery},
      volume = {3},
      number = {1},
      pages = {37--61}
    }
    
  • DOI BibTeX
    L. Hurt, A. ten Asbroek, S. Amenga-Etego, C. Zandoh, S. Danso, K. Edmond, C. Hurt, C. Tawiah, Z. Hill, J. Fenty, S. Owusu-Agyei, O.M. Campbell, B.R. Kirkwood
    Effect of vitamin?A supplementation on cause-specific mortality in women of reproductive age in Ghana: a secondary analysis from the ObaapaVitA trial
    in Bulletin of the World Health Organization, 91(1):19-27, January 2013
    @ARTICLE{Hurt2013,
      title = {Effect of vitamin?A supplementation on cause-specific mortality in women of reproductive age in Ghana: a secondary analysis from the ObaapaVitA trial},
      author = {Hurt, Lisa and ten Asbroek, Augustinus and Amenga-Etego, Seeba and Zandoh, Charles and Danso, Samuel and Edmond, Karen and Hurt, Chris and Tawiah, Charlotte and Hill, Zelee and Fenty, Justin and Owusu-Agyei, Seth and Campbell, Oona M and Kirkwood, Betty R},
      year = 2013,
      doi = {10.2471/BLT.11.100412},
      month = jan,
      journal = {Bulletin of the World Health Organization},
      volume = {91},
      number = {1},
      pages = {19--27}
    }
    
  • DOI BibTeX
    R. O'Dea, J.J. Crofts, M. Kaiser
    Spreading dynamics on spatially constrained complex brain networks
    in Journal of The Royal Society Interface, 10(81):20130016-20130016, February 2013
    @ARTICLE{O'Dea2013,
      title = {Spreading dynamics on spatially constrained complex brain networks},
      author = {O'Dea, R. and Crofts, J. J. and Kaiser, M.},
      year = 2013,
      doi = {10.1098/rsif.2013.0016},
      month = feb,
      journal = {Journal of The Royal Society Interface},
      volume = {10},
      number = {81},
      pages = {20130016--20130016}
    }
    
  • DOI BibTeX
    P. Andras, A. Andras
    Type 2 diabetes: A side effect of the adaptation of neurons and fat cells to support increased cognitive performance
    in Medical Hypotheses, 80(2):176-185, February 2013
    @ARTICLE{Andras2013,
      title = {Type 2 diabetes: A side effect of the adaptation of neurons and fat cells to support increased cognitive performance},
      author = {Andras, Peter and Andras, Alina},
      year = 2013,
      doi = {10.1016/j.mehy.2012.11.023},
      month = feb,
      journal = {Medical Hypotheses},
      volume = {80},
      number = {2},
      pages = {176--185}
    }
    
  • DOI BibTeX
    H. Gong, P. Zuliani, E. M. Clarke
    Model Checking a Synchronous Diabetes-Cancer Logical Network
    in Current Bioinformatics, 8(1):9-15, February 2013
    @ARTICLE{Gong2013,
      title = {Model Checking a Synchronous Diabetes-Cancer Logical Network},
      author = {Gong, Haijun and Zuliani, Paolo and M. Clarke, Edmund},
      year = 2013,
      doi = {10.2174/157489313804871542},
      month = feb,
      journal = {Current Bioinformatics},
      volume = {8},
      number = {1},
      pages = {9--15}
    }
    
  • DOI BibTeX
    P.N. Taylor, M. Goodfellow, Y. Wang, G. Baier
    Towards a large-scale model of patient-specific epileptic spike-wave discharges
    in Biological Cybernetics, 107(1):83-94, February 2013
    @ARTICLE{Taylor2013a,
      title = {Towards a large-scale model of patient-specific epileptic spike-wave discharges},
      author = {Taylor, Peter Neal and Goodfellow, Marc and Wang, Yujiang and Baier, Gerold},
      year = 2013,
      doi = {10.1007/s00422-012-0534-2},
      month = feb,
      journal = {Biological Cybernetics},
      volume = {107},
      number = {1},
      pages = {83--94}
    }
    
  • DOI BibTeX
    J. Sun, J.M. Garibaldi, N. Krasnogor, Q. Zhang
    An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation
    in Evolutionary Computation, 21(1):107-147, March 2013
    @ARTICLE{Sun2013,
      title = {An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation},
      author = {Sun, J. and Garibaldi, J. M. and Krasnogor, N. and Zhang, Q.},
      year = 2013,
      doi = {10.1162/EVCO_a_00068},
      month = mar,
      journal = {Evolutionary Computation},
      volume = {21},
      number = {1},
      pages = {107--147}
    }
    
  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design
    in Memetic Computing, 5(1):19-33, March 2013
    @ARTICLE{Terrazas2013,
      title = {A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design},
      author = {Terrazas, Germán and Krasnogor, Natalio},
      year = 2013,
      doi = {10.1007/s12293-012-0092-0},
      month = mar,
      journal = {Memetic Computing},
      volume = {5},
      number = {1},
      pages = {19--33}
    }
    
  • DOI BibTeX
    P.N. Taylor, G. Baier, S.S. Cash, J. Dauwels, J. Slotine, Y. Wang
    A model of stimulus induced epileptic spike-wave discharges
    in 2013 IEEE Symposium on Computational Intelligence, Cognitive Algorithms, Mind, and Brain (CCMB), p.53-59, Singapore, Singapore, April 2013
    @INPROCEEDINGS{Taylor2013,
      title = {A model of stimulus induced epileptic spike-wave discharges},
      author = {Taylor, Peter N. and Baier, Gerold and Cash, Sydney S. and Dauwels, Justin and Slotine, Jean-Jacques and Wang, Yujiang},
      year = 2013,
      doi = {10.1109/CCMB.2013.6609165},
      month = apr,
      booktitle = {2013 IEEE Symposium on Computational Intelligence, Cognitive Algorithms, Mind, and Brain (CCMB)},
      pages = {53--59},
      address = {Singapore, Singapore}
    }
    
  • DOI BibTeX
    A.L. Hook, C. Chang, J. Yang, S. Atkinson, R. Langer, D.G. Anderson, M.C. Davies, P. Williams, M.R. Alexander
    Discovery of Novel Materials with Broad Resistance to Bacterial Attachment Using Combinatorial Polymer Microarrays
    in Advanced Materials, 25(18):2542-2547, May 2013
    @ARTICLE{Hook2013,
      title = {Discovery of Novel Materials with Broad Resistance to Bacterial Attachment Using Combinatorial Polymer Microarrays},
      author = {Hook, Andrew L. and Chang, Chien-Yi and Yang, Jing and Atkinson, Steve and Langer, Robert and Anderson, Daniel G. and Davies, Martyn C. and Williams, Paul and Alexander, Morgan R.},
      year = 2013,
      doi = {10.1002/adma.201204936},
      month = may,
      journal = {Advanced Materials},
      volume = {25},
      number = {18},
      pages = {2542--2547}
    }
    
  • DOI BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning
    in Soft Computing, 17(6):953-981, June 2013
    @ARTICLE{Franco2013,
      title = {GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2013,
      doi = {10.1007/s00500-013-1016-8},
      month = jun,
      journal = {Soft Computing},
      volume = {17},
      number = {6},
      pages = {953--981}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Amos, F. de la Cruz
    Multicellular Computing Using Conjugation for Wiring
    in PLoS ONE, 8(6):e65986, June 2013
    @ARTICLE{Goni-Moreno2013,
      title = {Multicellular Computing Using Conjugation for Wiring},
      author = {Goñi-Moreno, Angel and Amos, Martyn and de la Cruz, Fernando},
      year = 2013,
      doi = {10.1371/journal.pone.0065986},
      month = jun,
      journal = {PLoS ONE},
      volume = {8},
      number = {6},
      pages = {e65986}
    }
    
  • DOI BibTeX
    D.A. Calian, J. Bacardit
    Integrating memetic search into the BioHEL evolutionary learning system for large-scale datasets
    in Memetic Computing, 5(2):95-130, June 2013
    @ARTICLE{Calian2013,
      title = {Integrating memetic search into the BioHEL evolutionary learning system for large-scale datasets},
      author = {Calian, Dan Andrei and Bacardit, Jaume},
      year = 2013,
      doi = {10.1007/s12293-013-0108-4},
      month = jun,
      journal = {Memetic Computing},
      volume = {5},
      number = {2},
      pages = {95--130}
    }
    
  • DOI BibTeX
    B.R. Kirkwood, A. Manu, A.H. ten Asbroek, S. Soremekun, B. Weobong, T. Gyan, S. Danso, S. Amenga-Etego, C. Tawiah-Agyemang, S. Owusu-Agyei, Z. Hill
    Effect of the Newhints home-visits intervention on neonatal mortality rate and care practices in Ghana: a cluster randomised controlled trial
    in The Lancet, 381(9884):2184-2192, June 2013
    @ARTICLE{Kirkwood2013,
      title = {Effect of the Newhints home-visits intervention on neonatal mortality rate and care practices in Ghana: a cluster randomised controlled trial},
      author = {Kirkwood, Betty R and Manu, Alexander and ten Asbroek, Augustinus HA and Soremekun, Seyi and Weobong, Benedict and Gyan, Thomas and Danso, Samuel and Amenga-Etego, Seeba and Tawiah-Agyemang, Charlotte and Owusu-Agyei, Seth and Hill, Zelee},
      year = 2013,
      doi = {10.1016/S0140-6736(13)60095-1},
      month = jun,
      journal = {The Lancet},
      volume = {381},
      number = {9884},
      pages = {2184--2192}
    }
    
  • DOI BibTeX
    I. Arnaldo, I. Contreras, D. Millán-Ruiz, J.I. Hidalgo, N. Krasnogor
    Matching island topologies to problem structure in parallel evolutionary algorithms
    in Soft Computing, 17(7):1209-1225, July 2013
    @ARTICLE{Arnaldo2013,
      title = {Matching island topologies to problem structure in parallel evolutionary algorithms},
      author = {Arnaldo, Ignacio and Contreras, Iván and Millán-Ruiz, David and Hidalgo, J. Ignacio and Krasnogor, Natalio},
      year = 2013,
      doi = {10.1007/s00500-013-0995-9},
      month = jul,
      journal = {Soft Computing},
      volume = {17},
      number = {7},
      pages = {1209--1225}
    }
    
  • DOI BibTeX
    F. Zubler, A. Hauri, S. Pfister, R. Bauer, J.C. Anderson, A.M. Whatley, R.J. Douglas
    Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects
    in PLoS Computational Biology, 9(8):e1003173, August 2013
    @ARTICLE{Zubler2013,
      title = {Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects},
      author = {Zubler, Frederic and Hauri, Andreas and Pfister, Sabina and Bauer, Roman and Anderson, John C. and Whatley, Adrian M. and Douglas, Rodney J.},
      year = 2013,
      doi = {10.1371/journal.pcbi.1003173},
      month = aug,
      journal = {PLoS Computational Biology},
      volume = {9},
      number = {8},
      pages = {e1003173}
    }
    
  • DOI BibTeX
    B.J.W. Dekkers, S. Pearce, R.P. van Bolderen-Veldkamp, A. Marshall, P. Widera, J. Gilbert, H.-. Drost, G.W. Bassel, K. Muller, J.R. King, A.T.A. Wood, I. Grosse, M. Quint, N. Krasnogor, G. Leubner-Metzger, M.J. Holdsworth, L. Bentsink
    Transcriptional Dynamics of Two Seed Compartments with Opposing Roles in Arabidopsis Seed Germination
    in PLANT PHYSIOLOGY, 163(1):205-215, September 2013
    @ARTICLE{Dekkers2013,
      title = {Transcriptional Dynamics of Two Seed Compartments with Opposing Roles in Arabidopsis Seed Germination},
      author = {Dekkers, B. J. W. and Pearce, S. and van Bolderen-Veldkamp, R. P. and Marshall, A. and Widera, P. and Gilbert, J. and Drost, H. -g. and Bassel, G. W. and Muller, K. and King, J. R. and Wood, A. T. A. and Grosse, I. and Quint, M. and Krasnogor, N. and Leubner-Metzger, G. and Holdsworth, M. J. and Bentsink, L.},
      year = 2013,
      doi = {10.1104/pp.113.223511},
      month = sep,
      journal = {PLANT PHYSIOLOGY},
      volume = {163},
      number = {1},
      pages = {205--215}
    }
    
  • DOI BibTeX
    P. Zuliani, A. Platzer, E.M. Clarke
    Bayesian statistical model checking with application to Stateflow/Simulink verification
    in Formal Methods in System Design, 43(2):338-367, October 2013
    @ARTICLE{Zuliani2013,
      title = {Bayesian statistical model checking with application to Stateflow/Simulink verification},
      author = {Zuliani, Paolo and Platzer, André and Clarke, Edmund M.},
      year = 2013,
      doi = {10.1007/s10703-013-0195-3},
      month = oct,
      journal = {Formal Methods in System Design},
      volume = {43},
      number = {2},
      pages = {338--367}
    }
    
  • DOI BibTeX
    M.J. Bell, M. Collison, P. Lord
    Can Inferred Provenance and Its Visualisation Be Used to Detect Erroneous Annotation? A Case Study Using UniProtKB
    in PLoS ONE, 8(10):e75541, October 2013
    @ARTICLE{Bell2013,
      title = {Can Inferred Provenance and Its Visualisation Be Used to Detect Erroneous Annotation? A Case Study Using UniProtKB},
      author = {Bell, Michael J. and Collison, Matthew and Lord, Phillip},
      year = 2013,
      doi = {10.1371/journal.pone.0075541},
      month = oct,
      journal = {PLoS ONE},
      volume = {8},
      number = {10},
      pages = {e75541}
    }
    
  • DOI BibTeX
    S. Pohl, G. Bhavsar, J. Hulme, A.E. Bloor, G. Misirli, M.W. Leckenby, D.S. Radford, W. Smith, A. Wipat, E.D. Williamson, C.R. Harwood, R.M. Cranenburgh
    Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins
    in PROTEOMICS, 13(22):3298-3308, November 2013
    @ARTICLE{Pohl2013,
      title = {Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins},
      author = {Pohl, Susanne and Bhavsar, Gaurav and Hulme, Joanne and Bloor, Alexandra E. and Misirli, Goksel and Leckenby, Matthew W. and Radford, David S. and Smith, Wendy and Wipat, Anil and Williamson, E. Diane and Harwood, Colin R. and Cranenburgh, Rocky M.},
      year = 2013,
      doi = {10.1002/pmic.201300183},
      month = nov,
      journal = {PROTEOMICS},
      volume = {13},
      number = {22},
      pages = {3298--3308}
    }
    
  • DOI BibTeX
    L.T. Lui, X. Xue, C. Sui, A. Brown, D.I. Pritchard, N. Halliday, K. Winzer, S.M. Howdle, F. Fernandez-Trillo, N. Krasnogor, C. Alexander
    Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes
    in Nature Chemistry, 5(12):1058-1065, November 2013
    @ARTICLE{Lui2013,
      title = {Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes},
      author = {Lui, Leong T. and Xue, Xuan and Sui, Cheng and Brown, Alan and Pritchard, David I. and Halliday, Nigel and Winzer, Klaus and Howdle, Steven M. and Fernandez-Trillo, Francisco and Krasnogor, Natalio and Alexander, Cameron},
      year = 2013,
      doi = {10.1038/nchem.1793},
      month = nov,
      journal = {Nature Chemistry},
      volume = {5},
      number = {12},
      pages = {1058--1065}
    }
    
  • DOI BibTeX
    A.L. Swan, A. Mobasheri, D. Allaway, S. Liddell, J. Bacardit
    Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology
    in OMICS: A Journal of Integrative Biology, 17(12):595-610, December 2013
    @ARTICLE{Swan2013,
      title = {Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology},
      author = {Swan, Anna Louise and Mobasheri, Ali and Allaway, David and Liddell, Susan and Bacardit, Jaume},
      year = 2013,
      doi = {10.1089/omi.2013.0017},
      month = dec,
      journal = {OMICS: A Journal of Integrative Biology},
      volume = {17},
      number = {12},
      pages = {595--610}
    }
    
  • DOI BibTeX
    G. Terrazas, H. Zenil, N. Krasnogor
    Exploring programmable self-assembly in non-DNA based molecular computing
    in Natural Computing, 12(4):499-515, December 2013
    @ARTICLE{Terrazas2013a,
      title = {Exploring programmable self-assembly in non-DNA based molecular computing},
      author = {Terrazas, Germán and Zenil, Hector and Krasnogor, Natalio},
      year = 2013,
      doi = {10.1007/s11047-013-9397-2},
      month = dec,
      journal = {Natural Computing},
      volume = {12},
      number = {4},
      pages = {499--515}
    }
    
  • DOI BibTeX
    J.S. Hallinan
    Computational Intelligence in the Design of Synthetic Microbial Genetic Systems
    in Microbial Synthetic Biology, Methods in Microbiology 40, p.1-37, 2013
    @INCOLLECTION{Hallinan2013,
      title = {Computational Intelligence in the Design of Synthetic Microbial Genetic Systems},
      author = {Hallinan, Jennifer S.},
      year = 2013,
      doi = {10.1016/B978-0-12-417029-2.00001-7},
      booktitle = {Microbial Synthetic Biology},
      publisher = {Elsevier},
      volume = {40},
      series = {Methods in Microbiology},
      pages = {1--37}
    }
    
  • URL BibTeX
    G. Terrazas, L.T. Lui, N. Krasnogor
    Spatial Computation and Algorithmic Information content in Non-DNA based Molecular Self-Assembly
    in Proceedings of the Spatial Computing Workshop (SCW 2013), p.85-90, Minessota, USA, 2013
    @INPROCEEDINGS{Terrazas2013b,
      title = {Spatial Computation and Algorithmic Information content in Non-DNA based Molecular Self-Assembly},
      author = {Terrazas, German and Lui, Leong Ting and Krasnogor, Natalio},
      year = 2013,
      url = {http://www.spatial-computing.org/_media/scw13/corrected_prooceedings-workshop-9_spatial-computing.pdf},
      booktitle = {Proceedings of the Spatial Computing Workshop (SCW 2013)},
      pages = {85--90},
      address = {Minessota, USA}
    }
    
  • DOI BibTeX
    C.R. Harwood, S. Pohl, W. Smith, A. Wipat
    Bacillus subtilis
    in Microbial Synthetic Biology, Methods in Microbiology 40, p.87-117, 2013
    @INCOLLECTION{Harwood2013,
      title = {Bacillus subtilis},
      author = {Harwood, Colin R. and Pohl, Susanne and Smith, Wendy and Wipat, Anil},
      year = 2013,
      doi = {10.1016/B978-0-12-417029-2.00004-2},
      booktitle = {Microbial Synthetic Biology},
      publisher = {Elsevier},
      volume = {40},
      series = {Methods in Microbiology},
      pages = {87--117}
    }
    
  • DOI BibTeX
    M. Kaiser
    The potential of the human connectome as a biomarker of brain disease
    in Frontiers in Human Neuroscience, 7, 2013
    @ARTICLE{Kaiser2013,
      title = {The potential of the human connectome as a biomarker of brain disease},
      author = {Kaiser, Marcus},
      year = 2013,
      doi = {10.3389/fnhum.2013.00484},
      journal = {Frontiers in Human Neuroscience},
      volume = {7}
    
  • DOI BibTeX
    X. Chan, C. Chang, K. Hong, K. Tee, W. Yin, K. Chan
    Insights of biosurfactant producing Serratia marcescens strain W2.3 isolated from diseased tilapia fish: a draft genome analysis
    in Gut Pathogens, 5(1):29, 2013
    @ARTICLE{Chan2013,
      title = {Insights of biosurfactant producing Serratia marcescens strain W2.3 isolated from diseased tilapia fish: a draft genome analysis},
      author = {Chan, Xin and Chang, Chien and Hong, Kar and Tee, Kok and Yin, Wai and Chan, Kok},
      year = 2013,
      doi = {10.1186/1757-4749-5-29},
      journal = {Gut Pathogens},
      volume = {5},
      number = {1},
      pages = {29}
    }
    
  • DOI BibTeX
    I.J. Bohr, E. Kenny, A. Blamire, J.T. O’Brien, A.J. Thomas, J. Richardson, M. Kaiser
    Resting-State Functional Connectivity in Late-Life Depression: Higher Global Connectivity and More Long Distance Connections
    in Frontiers in Psychiatry, 3, 2013
    @ARTICLE{Bohr2013,
      title = {Resting-State Functional Connectivity in Late-Life Depression: Higher Global Connectivity and More Long Distance Connections},
      author = {Bohr, Iwo Jerzy and Kenny, Eva and Blamire, Andrew and O’Brien, John T. and Thomas, Alan J. and Richardson, Jonathan and Kaiser, Marcus},
      year = 2013,
      doi = {10.3389/fpsyt.2012.00116},
      journal = {Frontiers in Psychiatry},
      volume = {3}
    
  • DOI BibTeX
    A.L. Swan, K.L. Hillier, J.R. Smith, D. Allaway, S. Liddell, J. Bacardit, A. Mobasheri
    Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning
    in BMC Musculoskeletal Disorders, 14(1):349, 2013
    @ARTICLE{Swan2013a,
      title = {Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning},
      author = {Swan, Anna L and Hillier, Kirsty L and Smith, Julia R and Allaway, David and Liddell, Susan and Bacardit, Jaume and Mobasheri, Ali},
      year = 2013,
      doi = {10.1186/1471-2474-14-349},
      journal = {BMC Musculoskeletal Disorders},
      volume = {14},
      number = {1},
      pages = {349}
    }
    
  • DOI BibTeX
    G. Misirli, A. Wipat, J. Mullen, K. James, M. Pocock, W. Smith, N. Allenby, J. Hallinan
    BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology
    in Journal of Integrative Bioinformatics, 10(2):224, 2013
    @ARTICLE{Misirli2013,
      title = {BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology},
      author = {Misirli, G. and Wipat, A. and Mullen, J. and James, K. and Pocock, M. and Smith, W. and Allenby, N. and Hallinan, J.},
      year = 2013,
      doi = {10.2390/biecoll-jib-2013-224},
      journal = {Journal of Integrative Bioinformatics},
      volume = {10},
      number = {2},
      pages = {224}
    }
    
  • DOI BibTeX
    S. Danso, E. Atwell, O. Johnson
    Linguistic and Statistically Derived Features for Cause of Death Prediction from Verbal Autopsy Text
    in Language Processing and Knowledge in the Web, Lecture Notes in Computer Science 8105, p.47-60, 2013
    @INCOLLECTION{Danso2013,
      title = {Linguistic and Statistically Derived Features for Cause of Death Prediction from Verbal Autopsy Text},
      author = {Danso, Samuel and Atwell, Eric and Johnson, Owen},
      year = 2013,
      doi = {10.1007/978-3-642-40722-2_5},
      booktitle = {Language Processing and Knowledge in the Web},
      publisher = {Springer Berlin Heidelberg},
      volume = {8105},
      series = {Lecture Notes in Computer Science},
      pages = {47--60}
    }
    
  • DOI BibTeX
    M.S. Weyland, H. Fellermann, M. Hadorn, D. Sorek, D. Lancet, S. Rasmussen, R.M. F?chslin
    The MATCHIT Automaton: Exploiting Compartmentalization for the Synthesis of Branched Polymers
    in Computational and Mathematical Methods in Medicine, 2013:1-8, 2013
    @ARTICLE{Weyland2013,
      title = {The MATCHIT Automaton: Exploiting Compartmentalization for the Synthesis of Branched Polymers},
      author = {Weyland, Mathias S. and Fellermann, Harold and Hadorn, Maik and Sorek, Daniel and Lancet, Doron and Rasmussen, Steen and F?chslin, Rudolf M.},
      year = 2013,
      doi = {10.1155/2013/467428},
      journal = {Computational and Mathematical Methods in Medicine},
      volume = {2013},
      pages = {1--8}
    }
    

2012

  • DOI BibTeX
    C. Städele, P. Andras, W. Stein
    Simultaneous measurement of membrane potential changes in multiple pattern generating neurons using voltage sensitive dye imaging
    in Journal of Neuroscience Methods, 203(1):78-88, January 2012
    @ARTICLE{Stadele2012,
      title = {Simultaneous measurement of membrane potential changes in multiple pattern generating neurons using voltage sensitive dye imaging},
      author = {Städele, Carola and Andras, Peter and Stein, Wolfgang},
      year = 2012,
      doi = {10.1016/j.jneumeth.2011.09.015},
      month = jan,
      journal = {Journal of Neuroscience Methods},
      volume = {203},
      number = {1},
      pages = {78--88}
    }
    
  • DOI BibTeX
    S. Nakjang, D.A. Ndeh, A. Wipat, D.N. Bolam, R.P. Hirt
    A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes
    in PLoS ONE, 7(1):e30287, January 2012
    @ARTICLE{Nakjang2012,
      title = {A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes},
      author = {Nakjang, Sirintra and Ndeh, Didier A. and Wipat, Anil and Bolam, David N. and Hirt, Robert P.},
      year = 2012,
      doi = {10.1371/journal.pone.0030287},
      month = jan,
      journal = {PLoS ONE},
      volume = {7},
      number = {1},
      pages = {e30287}
    }
    
  • DOI
    A.L. Hook, C. Chang, J. Yang, D.J. Scurr, R. Langer, D.G. Anderson, S. Atkinson, P. Williams, M.C. Davies, M.R. Alexander
    Polymer Microarrays for High Throughput Discovery of Biomaterials
    in Journal of Visualized Experiments, available online since January 2012
  • DOI BibTeX
    J. Marcelino, M. Kaiser
    Critical paths in a metapopulation model of H1N1: Efficiently delaying influenza spreading through flight cancellation
    in PLoS Currents, 4:e4f8c9a2e1fca8, April 2012
    @ARTICLE{Marcelino2012,
      title = {Critical paths in a metapopulation model of H1N1: Efficiently delaying influenza spreading through flight cancellation},
      author = {Marcelino, Jose and Kaiser, Marcus},
      year = 2012,
      doi = {10.1371/4f8c9a2e1fca8},
      month = apr,
      journal = {PLoS Currents},
      volume = {4},
      pages = {e4f8c9a2e1fca8}
    }
    
  • DOI slides data BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Analysing BioHEL using challenging boolean functions
    in Evolutionary Intelligence, 5(2):87-102, June 2012
    @ARTICLE{Franco2012,
      title = {Analysing BioHEL using challenging boolean functions},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2012,
      doi = {10.1007/s12065-012-0080-9},
      month = jun,
      journal = {Evolutionary Intelligence},
      volume = {5},
      number = {2},
      pages = {87--102}
    }
    
  • DOI BibTeX
    M.R. Brust, D. Turgut, C.H.C. Ribeiro, M. Kaiser
    Is the clustering coefficient a measure for fault tolerance in wireless sensor networks?
    in 2012 IEEE International Conference on Communications (ICC), p.183-187, Ottawa, ON, Canada, June 2012
    @INPROCEEDINGS{Brust2012,
      title = {Is the clustering coefficient a measure for fault tolerance in wireless sensor networks?},
      author = {Brust, Matthias R. and Turgut, Damla and Ribeiro, Carlos H. C. and Kaiser, Marcus},
      year = 2012,
      doi = {10.1109/ICC.2012.6364474},
      month = jun,
      booktitle = {2012 IEEE International Conference on Communications (ICC)},
      pages = {183--187},
      address = {Ottawa, ON, Canada}
    }
    
  • DOI BibTeX
    S. Yu, N. Hammerla, J. Yan, P. Andras
    A statistical aimbot detection method for online FPS games
    in The 2012 International Joint Conference on Neural Networks (IJCNN), p.1-8, Brisbane, Australia, June 2012
    @INPROCEEDINGS{Yu2012,
      title = {A statistical aimbot detection method for online FPS games},
      author = {Yu, Su-Yang and Hammerla, Nils and Yan, Jeff and Andras, Peter},
      year = 2012,
      doi = {10.1109/IJCNN.2012.6252489},
      month = jun,
      booktitle = {The 2012 International Joint Conference on Neural Networks (IJCNN)},
      pages = {1--8},
      address = {Brisbane, Australia}
    }
    
  • DOI BibTeX
    A. Pakhira, P. Andras
    Using network analysis metrics to discover functionally important methods in large-scale software systems
    in 2012 3rd International Workshop on Emerging Trends in Software Metrics (WETSoM), p.70-76, Zurich, Switzerland, June 2012
    @INPROCEEDINGS{Pakhira2012,
      title = {Using network analysis metrics to discover functionally important methods in large-scale software systems},
      author = {Pakhira, Anjan and Andras, Peter},
      year = 2012,
      doi = {10.1109/WETSoM.2012.6226996},
      month = jun,
      booktitle = {2012 3rd International Workshop on Emerging Trends in Software Metrics (WETSoM)},
      pages = {70--76},
      address = {Zurich, Switzerland}
    }
    
  • DOI BibTeX
    J. Weile, K. James, J. Hallinan, S.J. Cockell, P. Lord, A. Wipat, D.J. Wilkinson
    Bayesian integration of networks without gold standards
    in Bioinformatics, 28(11):1495-1500, June 2012
    @ARTICLE{Weile2012,
      title = {Bayesian integration of networks without gold standards},
      author = {Weile, J. and James, K. and Hallinan, J. and Cockell, S. J. and Lord, P. and Wipat, A. and Wilkinson, D. J.},
      year = 2012,
      doi = {10.1093/bioinformatics/bts154},
      month = jun,
      journal = {Bioinformatics},
      volume = {28},
      number = {11},
      pages = {1495--1500}
    }
    
  • DOI data BibTeX
    E. Glaab, J. Bacardit, J.M. Garibaldi, N. Krasnogor
    Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data
    in PLoS ONE, 7(7):e39932, July 2012
    @ARTICLE{Glaab2012,
      title = {Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data},
      author = {Glaab, Enrico and Bacardit, Jaume and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2012,
      doi = {10.1371/journal.pone.0039932},
      month = jul,
      journal = {PLoS ONE},
      volume = {7},
      number = {7},
      pages = {e39932}
    }
    
  • DOI BibTeX
    J.C. Chaplin, N.A. Russell, N. Krasnogor
    Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates
    in Biosystems, 109(1):35-51, July 2012
    @ARTICLE{Chaplin2012,
      title = {Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates},
      author = {Chaplin, J. C. and Russell, N. A. and Krasnogor, N.},
      year = 2012,
      doi = {10.1016/j.biosystems.2011.12.005},
      month = jul,
      journal = {Biosystems},
      volume = {109},
      number = {1},
      pages = {35--51}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Amos
    Continuous computation in engineered gene circuits
    in Biosystems, 109(1):52-56, July 2012
    @ARTICLE{Goni-Moreno2012a,
      title = {Continuous computation in engineered gene circuits},
      author = {Goñi-Moreno, Angel and Amos, Martyn},
      year = 2012,
      doi = {10.1016/j.biosystems.2012.02.001},
      month = jul,
      journal = {Biosystems},
      volume = {109},
      number = {1},
      pages = {52--56}
    }
    
  • DOI BibTeX
    C.H. Comin, J.L.B. Batista, M.P. Viana, L.D.F. Costa, B.A.N. Travençolo, M. Kaiser
    Structure And Dynamics: The Transition From Nonequilibrium To Equilibrium In Integrate-and-fire Dynamics
    in International Journal of Bifurcation and Chaos, 22(07):1250174, July 2012
    @ARTICLE{Comin2012,
      title = {Structure And Dynamics: The Transition From Nonequilibrium To Equilibrium In Integrate-and-fire Dynamics},
      author = {Comin, Cesar H. and Batista, João L. B. and Viana, Matheus P. and Costa, Luciano Da F. and Travençolo, Bruno A. N. and Kaiser, Marcus},
      year = 2012,
      doi = {10.1142/S021812741250174X},
      month = jul,
      journal = {International Journal of Bifurcation and Chaos},
      volume = {22},
      number = {07},
      pages = {1250174}
    }
    
  • DOI BibTeX
    A.L. Hook, C. Chang, J. Yang, J. Luckett, A. Cockayne, S. Atkinson, Y. Mei, R. Bayston, D.J. Irvine, R. Langer, D.G. Anderson, P. Williams, M.C. Davies, M.R. Alexander
    Combinatorial discovery of polymers resistant to bacterial attachment
    in Nature Biotechnology, 30(9):868-875, August 2012
    @ARTICLE{Hook2012,
      title = {Combinatorial discovery of polymers resistant to bacterial attachment},
      author = {Hook, Andrew L and Chang, Chien-Yi and Yang, Jing and Luckett, Jeni and Cockayne, Alan and Atkinson, Steve and Mei, Ying and Bayston, Roger and Irvine, Derek J and Langer, Robert and Anderson, Daniel G and Williams, Paul and Davies, Martyn C and Alexander, Morgan R},
      year = 2012,
      doi = {10.1038/nbt.2316},
      month = aug,
      journal = {Nature Biotechnology},
      volume = {30},
      number = {9},
      pages = {868--875}
    }
    
  • DOI BibTeX
    C. Chang, C. Koh, C. Sam, X. Chan, W.F. Yin, K.G. Chan
    Unusual Long-Chain N-Acyl Homoserine Lactone Production by and Presence of Quorum Quenching Activity in Bacterial Isolates from Diseased Tilapia Fish
    in PLoS ONE, 7(8):e44034, August 2012
    @ARTICLE{Chang2012,
      title = {Unusual Long-Chain N-Acyl Homoserine Lactone Production by and Presence of Quorum Quenching Activity in Bacterial Isolates from Diseased Tilapia Fish},
      author = {Chang, Chien-Yi and Koh, Chong-Lek and Sam, Choon-Kook and Chan, Xin-Yue and Yin, Wai Fong and Chan, Kok Gan},
      year = 2012,
      doi = {10.1371/journal.pone.0044034},
      month = aug,
      journal = {PLoS ONE},
      volume = {7},
      number = {8},
      pages = {e44034}
    }
    
  • DOI BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, R. Schneider, A. Valencia
    EnrichNet: network-based gene set enrichment analysis
    in Bioinformatics, 28(18):i451-i457, September 2012
    @ARTICLE{Glaab2012a,
      title = {EnrichNet: network-based gene set enrichment analysis},
      author = {Glaab, E. and Baudot, A. and Krasnogor, N. and Schneider, R. and Valencia, A.},
      year = 2012,
      doi = {10.1093/bioinformatics/bts389},
      month = sep,
      journal = {Bioinformatics},
      volume = {28},
      number = {18},
      pages = {i451--i457}
    }
    
  • DOI BibTeX
    M.J. Bell, C.S. Gillespie, D. Swan, P. Lord
    An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB
    in Bioinformatics, 28(18):i562-i568, September 2012
    @ARTICLE{Bell2012,
      title = {An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB},
      author = {Bell, M. J. and Gillespie, C. S. and Swan, D. and Lord, P.},
      year = 2012,
      doi = {10.1093/bioinformatics/bts372},
      month = sep,
      journal = {Bioinformatics},
      volume = {28},
      number = {18},
      pages = {i562--i568}
    }
    
  • DOI BibTeX
    D. Henriques, J.G. Martins, P. Zuliani, A. Platzer, E.M. Clarke
    Statistical Model Checking for Markov Decision Processes
    in 2012 Ninth International Conference on Quantitative Evaluation of Systems, p.84-93, London, United Kingdom, September 2012
    @INPROCEEDINGS{Henriques2012,
      title = {Statistical Model Checking for Markov Decision Processes},
      author = {Henriques, David and Martins, Joao G. and Zuliani, Paolo and Platzer, Andre and Clarke, Edmund M.},
      year = 2012,
      doi = {10.1109/QEST.2012.19},
      month = sep,
      booktitle = {2012 Ninth International Conference on Quantitative Evaluation of Systems},
      pages = {84--93},
      address = {London, United Kingdom}
    }
    
  • DOI eprint slides BibTeX
    J. Bacardit, P. Widera, A. Marquez-Chamorro, F. Divina, J.S. Aguilar-Ruiz, N. Krasnogor
    Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features
    in Bioinformatics, 28(19):2441-2448, October 2012
    @ARTICLE{Bacardit2012,
      title = {Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features},
      author = {Bacardit, J. and Widera, P. and Marquez-Chamorro, A. and Divina, F. and Aguilar-Ruiz, J. S. and Krasnogor, N.},
      year = 2012,
      doi = {10.1093/bioinformatics/bts472},
      month = oct,
      journal = {Bioinformatics},
      volume = {28},
      number = {19},
      pages = {2441--2448}
    }
    
  • DOI BibTeX
    O. Markovitch, D. Sorek, L.T. Lui, D. Lancet, N. Krasnogor
    Is There an Optimal Level of Open-Endedness in Prebiotic Evolution?
    in Origins of Life and Evolution of Biospheres, 42(5):469-474, October 2012
    @ARTICLE{Markovitch2012,
      title = {Is There an Optimal Level of Open-Endedness in Prebiotic Evolution?},
      author = {Markovitch, Omer and Sorek, Daniel and Lui, Leong Ting and Lancet, Doron and Krasnogor, Natalio},
      year = 2012,
      doi = {10.1007/s11084-012-9309-y},
      month = oct,
      journal = {Origins of Life and Evolution of Biospheres},
      volume = {42},
      number = {5},
      pages = {469--474}
    }
    
  • DOI BibTeX
    K. Zawadzki, C. Feenders, M.P. Viana, M. Kaiser, L.d.F. Costa
    Morphological Homogeneity of Neurons: Searching for Outlier Neuronal Cells
    in Neuroinformatics, 10(4):379-389, October 2012
    @ARTICLE{Zawadzki2012,
      title = {Morphological Homogeneity of Neurons: Searching for Outlier Neuronal Cells},
      author = {Zawadzki, Krissia and Feenders, Christoph and Viana, Matheus P. and Kaiser, Marcus and Costa, Luciano da F.},
      year = 2012,
      doi = {10.1007/s12021-012-9150-5},
      month = oct,
      journal = {Neuroinformatics},
      volume = {10},
      number = {4},
      pages = {379--389}
    }
    
  • DOI BibTeX
    P. Andras
    A Bayesian Interpretation of the Particle Swarm Optimization and Its Kernel Extension
    in PLoS ONE, 7(11):e48710, November 2012
    @ARTICLE{Andras2012,
      title = {A Bayesian Interpretation of the Particle Swarm Optimization and Its Kernel Extension},
      author = {Andras, Peter},
      year = 2012,
      doi = {10.1371/journal.pone.0048710},
      month = nov,
      journal = {PLoS ONE},
      volume = {7},
      number = {11},
      pages = {e48710}
    }
    
  • DOI BibTeX
    H.P. Fainberg, K. Bodley, J. Bacardit, D. Li, F. Wessely, N.P. Mongan, M.E. Symonds, L. Clarke, A. Mostyn
    Reduced Neonatal Mortality in Meishan Piglets: A Role for Hepatic Fatty Acids?
    in PLoS ONE, 7(11):e49101, November 2012
    @ARTICLE{Fainberg2012,
      title = {Reduced Neonatal Mortality in Meishan Piglets: A Role for Hepatic Fatty Acids?},
      author = {Fainberg, Hernan P. and Bodley, Katherine and Bacardit, Jaume and Li, Dongfang and Wessely, Frank and Mongan, Nigel P. and Symonds, Michael E. and Clarke, Lynne and Mostyn, Alison},
      year = 2012,
      doi = {10.1371/journal.pone.0049101},
      month = nov,
      journal = {PLoS ONE},
      volume = {7},
      number = {11},
      pages = {e49101}
    }
    
  • DOI BibTeX
    M. Collison, R.P. Hirt, A. Wipat, S. Nakjang, P. Sanseau, J.R. Brown
    Data mining the human gut microbiota for therapeutic targets
    in Briefings in Bioinformatics, 13(6):751-768, November 2012
    @ARTICLE{Collison2012,
      title = {Data mining the human gut microbiota for therapeutic targets},
      author = {Collison, M. and Hirt, R. P. and Wipat, A. and Nakjang, S. and Sanseau, P. and Brown, J. R.},
      year = 2012,
      doi = {10.1093/bib/bbs002},
      month = nov,
      journal = {Briefings in Bioinformatics},
      volume = {13},
      number = {6},
      pages = {751--768}
    }
    
  • DOI BibTeX
    P. Lord, S. Cockell, R. Stevens
    Three Steps to Heaven: Semantic Publishing in a Real World Workflow
    in Future Internet, 4(4):1004-1015, November 2012
    @ARTICLE{Lord2012,
      title = {Three Steps to Heaven: Semantic Publishing in a Real World Workflow},
      author = {Lord, Phillip and Cockell, Simon and Stevens, Robert},
      year = 2012,
      doi = {10.3390/fi4041004},
      month = nov,
      journal = {Future Internet},
      volume = {4},
      number = {4},
      pages = {1004--1015}
    }
    
  • DOI BibTeX
    M. Hadorn, E. Boenzli, K.T. Sorensen, H. Fellermann, P. Eggenberger Hotz, M.M. Hanczyc
    Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets
    in Proceedings of the National Academy of Sciences, 109(50):20320-20325, December 2012
    @ARTICLE{Hadorn2012,
      title = {Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets},
      author = {Hadorn, M. and Boenzli, E. and Sorensen, K. T. and Fellermann, H. and Eggenberger Hotz, P. and Hanczyc, M. M.},
      year = 2012,
      doi = {10.1073/pnas.1214386109},
      month = dec,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {109},
      number = {50},
      pages = {20320--20325}
    }
    
  • DOI BibTeX
    P. Zuliani, C. Baier, E.M. Clarke
    Rare-event verification for stochastic hybrid systems
    in Proceedings of the 15th ACM international conference on Hybrid Systems: Computation and Control - HSCC '12, p.217, Beijing, China, 2012
    @INPROCEEDINGS{Zuliani2012,
      title = {Rare-event verification for stochastic hybrid systems},
      author = {Zuliani, Paolo and Baier, Christel and Clarke, Edmund M.},
      year = 2012,
      doi = {10.1145/2185632.2185665},
      booktitle = {Proceedings of the 15th ACM international conference on Hybrid Systems: Computation and Control - HSCC '12},
      pages = {217},
      address = {Beijing, China}
    }
    
  • DOI BibTeX
    H. Gong, P. Zuliani, A. Komuravelli, J.R. Faeder, E.M. Clarke
    Computational Modeling and Verification of Signaling Pathways in Cancer
    in Algebraic and Numeric Biology, Lecture Notes in Computer Science 6479, p.117-135, 2012
    @INCOLLECTION{Gong2012,
      title = {Computational Modeling and Verification of Signaling Pathways in Cancer},
      author = {Gong, Haijun and Zuliani, Paolo and Komuravelli, Anvesh and Faeder, James R. and Clarke, Edmund M.},
      year = 2012,
      doi = {10.1007/978-3-642-28067-2_7},
      booktitle = {Algebraic and Numeric Biology},
      publisher = {Springer Berlin Heidelberg},
      volume = {6479},
      series = {Lecture Notes in Computer Science},
      pages = {117--135}
    }
    
  • DOI BibTeX
    K. Edmond, L. Hurt, J. Fenty, S. Amenga-Etego, C. Zandoh, C. Hurt, S. Danso, C. Tawiah, Z. Hill, A.H.A. ten Asbroek, S. Owusu-Agyei, O. Campbell, B.R. Kirkwood
    Effect of vitamin A supplementation in women of reproductive age on cause-specific early and late infant mortality in rural Ghana: ObaapaVitA double-blind, cluster-randomised, placebo-controlled trial
    in BMJ Open, 2(1):e000658, 2012
    @ARTICLE{Edmond2012,
      title = {Effect of vitamin A supplementation in women of reproductive age on cause-specific early and late infant mortality in rural Ghana: ObaapaVitA double-blind, cluster-randomised, placebo-controlled trial},
      author = {Edmond, Karen and Hurt, Lisa and Fenty, Justin and Amenga-Etego, Seeba and Zandoh, Charles and Hurt, Chris and Danso, Samuel and Tawiah, Charlotte and Hill, Zelee and ten Asbroek, Augustinus H A and Owusu-Agyei, Seth and Campbell, Oona and Kirkwood, Betty R},
      year = 2012,
      doi = {10.1136/bmjopen-2011-000658},
      journal = {BMJ Open},
      volume = {2},
      number = {1},
      pages = {e000658}
    }
    
  • DOI BibTeX
    S. Yu, N. Hammerla, J. Yan, P. Andras
    Aimbot Detection in Online FPS Games Using a Heuristic Method Based on Distribution Comparison Matrix
    in Neural Information Processing, Lecture Notes in Computer Science 7667, p.654-661, 2012
    @INCOLLECTION{Yu2012a,
      title = {Aimbot Detection in Online FPS Games Using a Heuristic Method Based on Distribution Comparison Matrix},
      author = {Yu, Su-Yang and Hammerla, Nils and Yan, Jeff and Andras, Peter},
      year = 2012,
      doi = {10.1007/978-3-642-34500-5_77},
      booktitle = {Neural Information Processing},
      publisher = {Springer Berlin Heidelberg},
      volume = {7667},
      series = {Lecture Notes in Computer Science},
      pages = {654--661}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Amos
    A reconfigurable NAND/NOR genetic logic gate
    in BMC Systems Biology, 6(1):126, 2012
    @ARTICLE{Goni-Moreno2012,
      title = {A reconfigurable NAND/NOR genetic logic gate},
      author = {Goñi-Moreno, Angel and Amos, Martyn},
      year = 2012,
      doi = {10.1186/1752-0509-6-126},
      journal = {BMC Systems Biology},
      volume = {6},
      number = {1},
      pages = {126}
    }
    
  • DOI BibTeX
    E.M. Clarke, W. Klieber, M. Nováček, P. Zuliani
    Model Checking and the State Explosion Problem
    in Tools for Practical Software Verification, Lecture Notes in Computer Science 7682, p.1-30, 2012
    @INCOLLECTION{Clarke2012,
      title = {Model Checking and the State Explosion Problem},
      author = {Clarke, Edmund M. and Klieber, William and Nováček, Miloš and Zuliani, Paolo},
      year = 2012,
      doi = {10.1007/978-3-642-35746-6_1},
      booktitle = {Tools for Practical Software Verification},
      publisher = {Springer Berlin Heidelberg},
      volume = {7682},
      series = {Lecture Notes in Computer Science},
      pages = {1--30}
    }
    
  • DOI BibTeX
    M. Galdzicki, M.L. Wilson, C.A. Rodriguez, M.R. Pocock, E. Oberortner, L. Adam, A. Adler, J.C. Anderson, J. Beal, Y. Cai, D. Chandran, D. Densmore, O.A. Drory, D. Endy, J.H. Gennari, R. Grünberg, T.S. Ham, N.J. Hillson, J.D. Johnson, A. Kuchinsky, M.W. Lux, C. Madsen, G. Misirli, C.J. Myers, C. Olguin, J. Peccoud, H. Plahar, D. Platt, N. Roehner, E. Sirin, T.F. Smith, G. Stan, et al.
    Synthetic Biology Open Language (SBOL) Version 1.1.0
    The BioBricks Foundation technical report, BBF RFC \#87, 2012
    @TECHREPORT{Galdzicki2012,
      title = {Synthetic Biology Open Language (SBOL) Version 1.1.0},
      author = {Galdzicki, Michal and Wilson, Mandy L. and Rodriguez, Cesar A. and Pocock, Matthew R. and Oberortner, Ernst and Adam, Laura and Adler, Aaron and Anderson, J. Christopher and Beal, Jacob and Cai, Yizhi and Chandran, Deepak and Densmore, Douglas and Drory, Omri A. and Endy, Drew and Gennari, John H. and Grünberg, Raik and Ham, Timothy S. and Hillson, Nathan J. and Johnson, Jeffrey D. and Kuchinsky, Allan and Lux, Matthew W. and Madsen, Curtis and Misirli, Goksel and Myers, Chris J. and Olguin, Carlos and Peccoud, Jean and Plahar, Hector and Platt, Darren and Roehner, Nicholas and Sirin, Evren and Smith, Trevor F. and Stan, Guy-Bart and Villalobos, Alan and Wipat, Anil and Sauro, Herbert M.},
      year = 2012,
      doi = {1721.1/73909},
      number = {BBF RFC \#87},
      institution = {The BioBricks Foundation}
    }
    
  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2011), Studies in Computational Intelligence 387, p.73-84, 2012
    @INCOLLECTION{Terrazas2012,
      title = {Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles},
      author = {Terrazas, Germán and Krasnogor, Natalio},
      year = 2012,
      doi = {10.1007/978-3-642-24094-2_5},
      booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2011)},
      publisher = {Springer Berlin Heidelberg},
      volume = {387},
      series = {Studies in Computational Intelligence},
      pages = {73--84}
    }
    
  • DOI BibTeX
    K. James, A. Wipat, J. Hallinan
    Is newer better?—evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae
    in Integrative Biology, 4(7):715, 2012
    @ARTICLE{James2012,
      title = {Is newer better?—evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae},
      author = {James, Katherine and Wipat, Anil and Hallinan, Jennifer},
      year = 2012,
      doi = {10.1039/c2ib00123c},
      journal = {Integrative Biology},
      volume = {4},
      number = {7},
      pages = {715}
    }
    
  • DOI slides code BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Post-processing operators for decision lists
    in Proceedings of the fourteenth international conference on Genetic and evolutionary computation conference - GECCO '12, p.847, Philadelphia, Pennsylvania, USA, 2012
    @INPROCEEDINGS{Franco2012a,
      title = {Post-processing operators for decision lists},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2012,
      doi = {10.1145/2330163.2330281},
      booktitle = {Proceedings of the fourteenth international conference on Genetic and evolutionary computation conference - GECCO '12},
      pages = {847},
      address = {Philadelphia, Pennsylvania, USA}
    }
    

2011

  • DOI BibTeX
    S. Varier, M. Kaiser
    Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network
    in PLoS Computational Biology, 7(1):e1001044, January 2011
    @ARTICLE{Varier2011a,
      title = {Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network},
      author = {Varier, Sreedevi and Kaiser, Marcus},
      year = 2011,
      doi = {10.1371/journal.pcbi.1001044},
      month = jan,
      journal = {PLoS Computational Biology},
      volume = {7},
      number = {1},
      pages = {e1001044}
    }
    
  • DOI BibTeX
    S. Atkinson, R.J. Goldstone, G.W.P. Joshua, C. Chang, H.L. Patrick, M. Cámara, B.W. Wren, P. Williams
    Biofilm Development on Caenorhabditis elegans by Yersinia Is Facilitated by Quorum Sensing-Dependent Repression of Type III Secretion
    in PLoS Pathogens, 7(1):e1001250, January 2011
    @ARTICLE{Atkinson2011,
      title = {Biofilm Development on Caenorhabditis elegans by Yersinia Is Facilitated by Quorum Sensing-Dependent Repression of Type III Secretion},
      author = {Atkinson, Steve and Goldstone, Robert J. and Joshua, George W. P. and Chang, Chien-Yi and Patrick, Hannah L. and Cámara, Miguel and Wren, Brendan W. and Williams, Paul},
      year = 2011,
      doi = {10.1371/journal.ppat.1001250},
      month = jan,
      journal = {PLoS Pathogens},
      volume = {7},
      number = {1},
      pages = {e1001250}
    }
    
  • DOI
    N. Swainston, D. Waltemath, N. Swainston, A. Lister, F. Bergmann, R. Henkel, S. Hoops, M. Hucka, N. Juty, S. Keating, C. Knuepfer, F. Krause, C. Laibe, W. Liebermeister, C. Lloyd, G. Misirli, M. Schulz, M. Taschuk, N. Le Novère
    SBML Level 3 Package Proposal: Annotation
    in Nature Precedings, available online since January 2011
  • DOI BibTeX
    W. Stein, C. Städele, P. Andras
    Single-sweep voltage-sensitive dye imaging of interacting identified neurons
    in Journal of Neuroscience Methods, 194(2):224-234, January 2011
    @ARTICLE{Stein2011a,
      title = {Single-sweep voltage-sensitive dye imaging of interacting identified neurons},
      author = {Stein, Wolfgang and Städele, Carola and Andras, Peter},
      year = 2011,
      doi = {10.1016/j.jneumeth.2010.10.007},
      month = jan,
      journal = {Journal of Neuroscience Methods},
      volume = {194},
      number = {2},
      pages = {224--234}
    }
    
  • DOI BibTeX
    Y. Wang, A. Komuravelli, P. Zuliani, E.M. Clarke
    Analog circuit verification by statistical model checking
    in 16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011), p.1-6, Yokohama, Japan, January 2011
    @INPROCEEDINGS{Wang2011,
      title = {Analog circuit verification by statistical model checking},
      author = {Wang, Ying-Chih and Komuravelli, Anvesh and Zuliani, Paolo and Clarke, Edmund M.},
      year = 2011,
      doi = {10.1109/ASPDAC.2011.5722168},
      month = jan,
      booktitle = {16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011)},
      pages = {1--6},
      address = {Yokohama, Japan}
    }
    
  • DOI BibTeX
    C. Echtermeyer, L. da Fontoura Costa, F.A. Rodrigues, M. Kaiser
    Automatic Network Fingerprinting through Single-Node Motifs
    in PLoS ONE, 6(1):e15765, January 2011
    @ARTICLE{Echtermeyer2011,
      title = {Automatic Network Fingerprinting through Single-Node Motifs},
      author = {Echtermeyer, Christoph and da Fontoura Costa, Luciano and Rodrigues, Francisco A. and Kaiser, Marcus},
      year = 2011,
      doi = {10.1371/journal.pone.0015765},
      month = jan,
      journal = {PLoS ONE},
      volume = {6},
      number = {1},
      pages = {e15765}
    }
    
  • URL eprint code BibTeX
    P. Widera, N. Krasnogor
    Protein Models Comparator: Scalable Bioinformatics Computing on the Google App Engine Platform
    in Computing Research Repository, arXiv:1102.4293v2, February 2011
    @ARTICLE{Widera2011,
      title = {Protein Models Comparator: Scalable Bioinformatics Computing on the Google App Engine Platform},
      author = {Widera, Paweł and Krasnogor, Natalio},
      year = 2011,
      url = {http://arxiv.org/abs/1102.4293},
      month = feb,
      journal = {Computing Research Repository},
      volume = {arXiv:1102.4293v2}
    
  • DOI
    W. Stein, C. Städele, P. Andras
    Optical Imaging of Neurons in the Crab Stomatogastric Ganglion with Voltage-sensitive Dyes
    in Journal of Visualized Experiments, available online since March 2011
  • DOI BibTeX
    A. Goñi-Moreno, M. Redondo-Nieto, F. Arroyo, J. Castellanos
    Biocircuit design through engineering bacterial logic gates
    in Natural Computing, 10(1):119-127, March 2011
    @ARTICLE{Goni-Moreno2011a,
      title = {Biocircuit design through engineering bacterial logic gates},
      author = {Goñi-Moreno, Angel and Redondo-Nieto, Miguel and Arroyo, Fernando and Castellanos, Juan},
      year = 2011,
      doi = {10.1007/s11047-010-9184-2},
      month = mar,
      journal = {Natural Computing},
      volume = {10},
      number = {1},
      pages = {119--127}
    }
    
  • DOI BibTeX
    G. Misirli, J.S. Hallinan, T. Yu, J.R. Lawson, S.M. Wimalaratne, M.T. Cooling, A. Wipat
    Model annotation for synthetic biology: automating model to nucleotide sequence conversion
    in Bioinformatics, 27(7):973-979, April 2011
    @ARTICLE{Misirli2011,
      title = {Model annotation for synthetic biology: automating model to nucleotide sequence conversion},
      author = {Misirli, G. and Hallinan, J. S. and Yu, T. and Lawson, J. R. and Wimalaratne, S. M. and Cooling, M. T. and Wipat, A.},
      year = 2011,
      doi = {10.1093/bioinformatics/btr048},
      month = apr,
      journal = {Bioinformatics},
      volume = {27},
      number = {7},
      pages = {973--979}
    }
    
  • DOI BibTeX
    S.G. Addinall, E. Holstein, C. Lawless, M. Yu, K. Chapman, A.P. Banks, H. Ngo, L. Maringele, M. Taschuk, A. Young, A. Ciesiolka, A.L. Lister, A. Wipat, D.J. Wilkinson, D. Lydall
    Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects
    in PLoS Genetics, 7(4):e1001362, April 2011
    @ARTICLE{Addinall2011,
      title = {Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects},
      author = {Addinall, Stephen Gregory and Holstein, Eva-Maria and Lawless, Conor and Yu, Min and Chapman, Kaye and Banks, A. Peter and Ngo, Hien-Ping and Maringele, Laura and Taschuk, Morgan and Young, Alexander and Ciesiolka, Adam and Lister, Allyson Lurena and Wipat, Anil and Wilkinson, Darren James and Lydall, David},
      year = 2011,
      doi = {10.1371/journal.pgen.1001362},
      month = apr,
      journal = {PLoS Genetics},
      volume = {7},
      number = {4},
      pages = {e1001362}
    }
    
  • DOI BibTeX
    K.T. Lythgow, G. Hudson, P. Andras, P.F. Chinnery
    A critical analysis of the combined usage of protein localization prediction methods: Increasing the number of independent data sets can reduce the accuracy of predicted mitochondrial localization
    in Mitochondrion, 11(3):444-449, May 2011
    @ARTICLE{Lythgow2011,
      title = {A critical analysis of the combined usage of protein localization prediction methods: Increasing the number of independent data sets can reduce the accuracy of predicted mitochondrial localization},
      author = {Lythgow, Kieren T. and Hudson, Gavin and Andras, Peter and Chinnery, Patrick F.},
      year = 2011,
      doi = {10.1016/j.mito.2010.12.016},
      month = may,
      journal = {Mitochondrion},
      volume = {11},
      number = {3},
      pages = {444--449}
    }
    
  • DOI BibTeX
    J. Weile, M. Pocock, S.J. Cockell, P. Lord, J.M. Dewar, E.-. Holstein, D. Wilkinson, D. Lydall, J. Hallinan, A. Wipat
    Customizable views on semantically integrated networks for systems biology
    in Bioinformatics, 27(9):1299-1306, May 2011
    @ARTICLE{Weile2011,
      title = {Customizable views on semantically integrated networks for systems biology},
      author = {Weile, J. and Pocock, M. and Cockell, S. J. and Lord, P. and Dewar, J. M. and Holstein, E. -m. and Wilkinson, D. and Lydall, D. and Hallinan, J. and Wipat, A.},
      year = 2011,
      doi = {10.1093/bioinformatics/btr134},
      month = may,
      journal = {Bioinformatics},
      volume = {27},
      number = {9},
      pages = {1299--1306}
    }
    
  • DOI BibTeX
    M. Porcar, A. Danchin, V. de Lorenzo, V.A. dos Santos, N. Krasnogor, S. Rasmussen, A. Moya
    The ten grand challenges of synthetic life
    in Systems and Synthetic Biology, 5(1-2):1-9, June 2011
    @ARTICLE{Porcar2011,
      title = {The ten grand challenges of synthetic life},
      author = {Porcar, Manuel and Danchin, Antoine and de Lorenzo, Victor and dos Santos, Vitor A. and Krasnogor, Natalio and Rasmussen, Steen and Moya, Andrés},
      year = 2011,
      doi = {10.1007/s11693-011-9084-5},
      month = jun,
      journal = {Systems and Synthetic Biology},
      volume = {5},
      number = {1-2},
      pages = {1--9}
    }
    
  • DOI BibTeX
    P. Andras
    Research: metrics, quality, and management implications
    in Research Evaluation, 20(2):90-106, June 2011
    @ARTICLE{Andras2011,
      title = {Research: metrics, quality, and management implications},
      author = {Andras, Peter},
      year = 2011,
      doi = {10.3152/095820211X12941371876265},
      month = jun,
      journal = {Research Evaluation},
      volume = {20},
      number = {2},
      pages = {90--106}
    }
    
  • DOI BibTeX
    G.W. Bassel, H. Lan, E. Glaab, D.J. Gibbs, T. Gerjets, N. Krasnogor, A.J. Bonner, M.J. Holdsworth, N.J. Provart
    Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions
    in Proceedings of the National Academy of Sciences, 108(23):9709-9714, June 2011
    @ARTICLE{Bassel2011a,
      title = {Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions},
      author = {Bassel, G. W. and Lan, H. and Glaab, E. and Gibbs, D. J. and Gerjets, T. and Krasnogor, N. and Bonner, A. J. and Holdsworth, M. J. and Provart, N. J.},
      year = 2011,
      doi = {10.1073/pnas.1100958108},
      month = jun,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {108},
      number = {23},
      pages = {9709--9714}
    }
    
  • DOI BibTeX
    H.O. Habashy, D.G. Powe, E. Glaab, G. Ball, I. Spiteri, N. Krasnogor, J.M. Garibaldi, E.A. Rakha, A.R. Green, C. Caldas, I.O. Ellis
    RERG (Ras-like, oestrogen-regulated, growth-inhibitor) expression in breast cancer: a marker of ER-positive luminal-like subtype
    in Breast Cancer Research and Treatment, 128(2):315-326, July 2011
    @ARTICLE{Habashy2011,
      title = {RERG (Ras-like, oestrogen-regulated, growth-inhibitor) expression in breast cancer: a marker of ER-positive luminal-like subtype},
      author = {Habashy, Hany Onsy and Powe, Desmond G. and Glaab, Enrico and Ball, Graham and Spiteri, Inmaculada and Krasnogor, Natalio and Garibaldi, Jonathan M. and Rakha, Emad A. and Green, Andrew R. and Caldas, C. and Ellis, Ian O.},
      year = 2011,
      doi = {10.1007/s10549-010-1073-y},
      month = jul,
      journal = {Breast Cancer Research and Treatment},
      volume = {128},
      number = {2},
      pages = {315--326}
    }
    
  • DOI BibTeX
    M. Kaiser
    A tutorial in connectome analysis: Topological and spatial features of brain networks
    in NeuroImage, 57(3):892-907, August 2011
    @ARTICLE{Kaiser2011,
      title = {A tutorial in connectome analysis: Topological and spatial features of brain networks},
      author = {Kaiser, Marcus},
      year = 2011,
      doi = {10.1016/j.neuroimage.2011.05.025},
      month = aug,
      journal = {NeuroImage},
      volume = {57},
      number = {3},
      pages = {892--907}
    }
    
  • DOI BibTeX
    H.-. Chang, C. Lawless, S.G. Addinall, S. Oexle, M. Taschuk, A. Wipat, D.J. Wilkinson, D. Lydall, B.J. Andrews
    Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast
    in G3: Genes|Genomes|Genetics, 1(3):197-208, August 2011
    @ARTICLE{Chang2011a,
      title = {Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast},
      author = {Chang, H. -y. and Lawless, C. and Addinall, S. G. and Oexle, S. and Taschuk, M. and Wipat, A. and Wilkinson, D. J. and Lydall, D. and Andrews, B. J.},
      year = 2011,
      doi = {10.1534/g3.111.000216},
      month = aug,
      journal = {G3: Genes|Genomes|Genetics},
      volume = {1},
      number = {3},
      pages = {197--208}
    }
    
  • DOI BibTeX
    S.C. Weatherhead, P.M. Farr, D. Jamieson, J.S. Hallinan, J.J. Lloyd, A. Wipat, N.J. Reynolds
    Keratinocyte Apoptosis in Epidermal Remodeling and Clearance of Psoriasis Induced by UV Radiation
    in Journal of Investigative Dermatology, 131(9):1916-1926, September 2011
    @ARTICLE{Weatherhead2011,
      title = {Keratinocyte Apoptosis in Epidermal Remodeling and Clearance of Psoriasis Induced by UV Radiation},
      author = {Weatherhead, Sophie C and Farr, Peter M and Jamieson, David and Hallinan, Jennifer S and Lloyd, James J and Wipat, Anil and Reynolds, Nick J},
      year = 2011,
      doi = {10.1038/jid.2011.134},
      month = sep,
      journal = {Journal of Investigative Dermatology},
      volume = {131},
      number = {9},
      pages = {1916--1926}
    }
    
  • DOI BibTeX
    A. Goñi-Moreno, M. Amos
    Model for a population-based microbial oscillator
    in Biosystems, 105(3):286-294, September 2011
    @ARTICLE{Goni-Moreno2011,
      title = {Model for a population-based microbial oscillator},
      author = {Goñi-Moreno, Angel and Amos, Martyn},
      year = 2011,
      doi = {10.1016/j.biosystems.2011.05.011},
      month = sep,
      journal = {Biosystems},
      volume = {105},
      number = {3},
      pages = {286--294}
    }
    
  • DOI BibTeX
    G.W. Bassel, E. Glaab, J. Marquez, M.J. Holdsworth, J. Bacardit
    Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets
    in THE PLANT CELL ONLINE, 23(9):3101-3116, September 2011
    @ARTICLE{Bassel2011,
      title = {Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets},
      author = {Bassel, G. W. and Glaab, E. and Marquez, J. and Holdsworth, M. J. and Bacardit, J.},
      year = 2011,
      doi = {10.1105/tpc.111.088153},
      month = sep,
      journal = {THE PLANT CELL ONLINE},
      volume = {23},
      number = {9},
      pages = {3101--3116}
    }
    
  • DOI BibTeX
    L.K.J. Stadler, T. Hoffmann, D.C. Tomlinson, Q. Song, T. Lee, M. Busby, Y. Nyathi, E. Gendra, C. Tiede, K. Flanagan, S.J. Cockell, A. Wipat, C. Harwood, S.D. Wagner, M.A. Knowles, J.J. Davis, N. Keegan, P. Ko Ferrigno
    Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant
    in Protein Engineering Design and Selection, 24(9):751-763, September 2011
    @ARTICLE{Stadler2011,
      title = {Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant},
      author = {Stadler, L. K. J. and Hoffmann, T. and Tomlinson, D. C. and Song, Q. and Lee, T. and Busby, M. and Nyathi, Y. and Gendra, E. and Tiede, C. and Flanagan, K. and Cockell, S. J. and Wipat, A. and Harwood, C. and Wagner, S. D. and Knowles, M. A. and Davis, J. J. and Keegan, N. and Ko Ferrigno, P.},
      year = 2011,
      doi = {10.1093/protein/gzr019},
      month = sep,
      journal = {Protein Engineering Design and Selection},
      volume = {24},
      number = {9},
      pages = {751--763}
    }
    
  • DOI BibTeX
    H. Fellermann, S. Rasmussen
    On the Growth Rate of Non-Enzymatic Molecular Replicators
    in Entropy, 13(12):1882-1903, October 2011
    @ARTICLE{Fellermann2011,
      title = {On the Growth Rate of Non-Enzymatic Molecular Replicators},
      author = {Fellermann, Harold and Rasmussen, Steen},
      year = 2011,
      doi = {10.3390/e13101882},
      month = oct,
      journal = {Entropy},
      volume = {13},
      number = {12},
      pages = {1882--1903}
    }
    
  • DOI BibTeX
    T.A. Quinn, S. Granite, M.A. Allessie, C. Antzelevitch, C. Bollensdorff, G. Bub, R.A. Burton, E. Cerbai, P.S. Chen, M. Delmar, D. DiFrancesco, Y.E. Earm, I.R. Efimov, M. Egger, E. Entcheva, M. Fink, R. Fischmeister, M.R. Franz, A. Garny, W.R. Giles, T. Hannes, S.E. Harding, P.J. Hunter, G. Iribe, J. Jalife, C.R. Johnson, R.S. Kass, I. Kodama, G. Koren, P. Lord, V.S. Markhasin, S. Matsuoka, et al.
    Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing
    in Progress in Biophysics and Molecular Biology, 107(1):4-10, October 2011
    @ARTICLE{Quinn2011,
      title = {Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing},
      author = {Quinn, T. A. and Granite, S. and Allessie, M. A. and Antzelevitch, C. and Bollensdorff, C. and Bub, G. and Burton, R. A.b. and Cerbai, E. and Chen, P. S. and Delmar, M. and DiFrancesco, D. and Earm, Y. E. and Efimov, I. R. and Egger, M. and Entcheva, E. and Fink, M. and Fischmeister, R. and Franz, M. R. and Garny, A. and Giles, W. R. and Hannes, T. and Harding, S. E. and Hunter, P. J. and Iribe, G. and Jalife, J. and Johnson, C. R. and Kass, R. S. and Kodama, I. and Koren, G. and Lord, P. and Markhasin, V. S. and Matsuoka, S. and McCulloch, A. D. and Mirams, G. R. and Morley, G. E. and Nattel, S. and Noble, D. and Olesen, S. P. and Panfilov, A. V. and Trayanova, N. A. and Ravens, U. and Richard, S. and Rosenbaum, D. S. and Rudy, Y. and Sachs, F. and Sachse, F. B. and Saint, D. A. and Schotten, U. and Solovyova, O. and Taggart, P. and Tung, L. and Varró, A. and Volders, P. G. and Wang, K. and Weiss, J. N. and Wettwer, E. and White, E. and Wilders, R. and Winslow, R. L. and Kohl, P.},
      year = 2011,
      doi = {10.1016/j.pbiomolbio.2011.07.001},
      month = oct,
      journal = {Progress in Biophysics and Molecular Biology},
      volume = {107},
      number = {1},
      pages = {4--10}
    }
    
  • DOI BibTeX
    F. Dupeux, J. Santiago, K. Betz, J. Twycross, S. Park, L. Rodriguez, M. Gonzalez-Guzman, M.R. Jensen, N. Krasnogor, M. Blackledge, M. Holdsworth, S.R. Cutler, P.L. Rodriguez, J.A. Márquez
    A thermodynamic switch modulates abscisic acid receptor sensitivity
    in The EMBO Journal, 30(20):4171-4184, October 2011
    @ARTICLE{Dupeux2011,
      title = {A thermodynamic switch modulates abscisic acid receptor sensitivity},
      author = {Dupeux, Florine and Santiago, Julia and Betz, Katja and Twycross, Jamie and Park, Sang-Youl and Rodriguez, Lesia and Gonzalez-Guzman, Miguel and Jensen, Malene Ringkjøbing and Krasnogor, Natalio and Blackledge, Martin and Holdsworth, Michael and Cutler, Sean R and Rodriguez, Pedro L and Márquez, José Antonio},
      year = 2011,
      doi = {10.1038/emboj.2011.294},
      month = oct,
      journal = {The EMBO Journal},
      volume = {30},
      number = {20},
      pages = {4171--4184}
    }
    
  • DOI BibTeX
    S. Varier, M. Kaiser, R. Forsyth
    Establishing, versus Maintaining, Brain Function: A Neuro-computational Model of Cortical Reorganization after Injury to the Immature Brain
    in Journal of the International Neuropsychological Society, 17(06):1030-1038, November 2011
    @ARTICLE{Varier2011,
      title = {Establishing, versus Maintaining, Brain Function: A Neuro-computational Model of Cortical Reorganization after Injury to the Immature Brain},
      author = {Varier, Sreedevi and Kaiser, Marcus and Forsyth, Rob},
      year = 2011,
      doi = {10.1017/S1355617711000993},
      month = nov,
      journal = {Journal of the International Neuropsychological Society},
      volume = {17},
      number = {06},
      pages = {1030--1038}
    }
    
  • DOI BibTeX
    C.-. Chang, L. Hobley, R. Till, M. Capeness, M. Kanna, W. Burtt, P. Jagtap, S.-. Aizawa, R.E. Sockett
    The Bdellovibrio bacteriovorus twin-arginine transport system has roles in predatory and prey-independent growth
    in Microbiology, 157(11):3079-3093, November 2011
    @ARTICLE{Chang2011,
      title = {The Bdellovibrio bacteriovorus twin-arginine transport system has roles in predatory and prey-independent growth},
      author = {Chang, C. -y. and Hobley, L. and Till, R. and Capeness, M. and Kanna, M. and Burtt, W. and Jagtap, P. and Aizawa, S. -i. and Sockett, R. E.},
      year = 2011,
      doi = {10.1099/mic.0.052449-0},
      month = nov,
      journal = {Microbiology},
      volume = {157},
      number = {11},
      pages = {3079--3093}
    }
    
  • DOI BibTeX
    H. Gong, P. Zuliani, Q. Wang, E.M. Clarke
    Formal analysis for logical models of pancreatic cancer
    in IEEE Conference on Decision and Control and European Control Conference, p.4855-4860, Orlando, FL, USA, December 2011
    @INPROCEEDINGS{Gong2011,
      title = {Formal analysis for logical models of pancreatic cancer},
      author = {Gong, Haijun and Zuliani, Paolo and Wang, Qinsi and Clarke, Edmund M.},
      year = 2011,
      doi = {10.1109/CDC.2011.6161052},
      month = dec,
      booktitle = {IEEE Conference on Decision and Control and European Control Conference},
      pages = {4855--4860},
      address = {Orlando, FL, USA}
    }
    
  • DOI BibTeX
    J. Blakes, J. Twycross, F.J. Romero-Campero, N. Krasnogor
    The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology
    in Bioinformatics, 27(23):3323-3324, December 2011
    @ARTICLE{Blakes2011,
      title = {The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology},
      author = {Blakes, J. and Twycross, J. and Romero-Campero, F. J. and Krasnogor, N.},
      year = 2011,
      doi = {10.1093/bioinformatics/btr571},
      month = dec,
      journal = {Bioinformatics},
      volume = {27},
      number = {23},
      pages = {3323--3324}
    }
    
  • DOI BibTeX
    C. Echtermeyer, C.E. Han, A. Rotarska-Jagiela, H. Mohr, P.J. Uhlhaas, M. Kaiser
    Integrating Temporal and Spatial Scales: Human Structural Network Motifs Across Age and Region of Interest Size
    in Frontiers in Neuroinformatics, 5, 2011
    @ARTICLE{Echtermeyer2011a,
      title = {Integrating Temporal and Spatial Scales: Human Structural Network Motifs Across Age and Region of Interest Size},
      author = {Echtermeyer, Christoph and Han, Cheol E. and Rotarska-Jagiela, Anna and Mohr, Harald and Uhlhaas, Peter J. and Kaiser, Marcus},
      year = 2011,
      doi = {10.3389/fninf.2011.00010},
      journal = {Frontiers in Neuroinformatics},
      volume = {5}
    
  • DOI BibTeX
    J.S. Hallinan, K. James, A. Wipat
    Network Approaches to the Functional Analysis of Microbial Proteins
    in Advances in Microbial Physiology, 59, p.101-133, 2011
    @INCOLLECTION{Hallinan2011,
      title = {Network Approaches to the Functional Analysis of Microbial Proteins},
      author = {Hallinan, J. S. and James, K. and Wipat, A.},
      year = 2011,
      doi = {10.1016/B978-0-12-387661-4.00005-7},
      booktitle = {Advances in Microbial Physiology},
      pages = {101--133}
    }
    
  • DOI slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding
    in Proceedings of the 13th annual conference on Genetic and evolutionary computation - GECCO '11, p.1291, Dublin, Ireland, 2011
    Best Paper Award in GBML track
    @INPROCEEDINGS{Franco2011,
      title = {Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2011,
      doi = {10.1145/2001576.2001750},
      note = {Best Paper Award in GBML track},
      booktitle = {Proceedings of the 13th annual conference on Genetic and evolutionary computation - GECCO '11},
      pages = {1291},
      address = {Dublin, Ireland}
    }
    
  • DOI BibTeX
    H. Gong, P. Zuliani, E.M. Clarke, T.D. Pham, X. Zhou, H. Tanaka, M. Oyama-Higa, X. Jiang, C. Sun, J. Kowalski, X. Jia
    Model Checking of a Diabetes-Cancer Model
    in 2011 International Symposium On Computational Models For Life Sciences (CMLS-11), p.234-243, Toyama City, (Japan), 2011
    @INPROCEEDINGS{Gong2011a,
      title = {Model Checking of a Diabetes-Cancer Model},
      author = {Gong, Haijun and Zuliani, Paolo and Clarke, Edmund M. and Pham, Tuan D. and Zhou, Xiaobo and Tanaka, Hiroshi and Oyama-Higa, Mayumi and Jiang, Xiaoyi and Sun, Changming and Kowalski, Jeanne and Jia, Xiuping},
      year = 2011,
      doi = {10.1063/1.3596647},
      booktitle = {2011 International Symposium On Computational Models For Life Sciences (CMLS-11)},
      pages = {234--243},
      address = {Toyama City, (Japan)}
    }
    
  • DOI BibTeX
    R.A.J. Woolley, J. Stirling, A. Radocea, N. Krasnogor, P. Moriarty
    Automated probe microscopy via evolutionary optimization at the atomic scale
    in Applied Physics Letters, 98(25):253104, 2011
    @ARTICLE{Woolley2011,
      title = {Automated probe microscopy via evolutionary optimization at the atomic scale},
      author = {Woolley, Richard A. J. and Stirling, Julian and Radocea, Adrian and Krasnogor, Natalio and Moriarty, Philip},
      year = 2011,
      doi = {10.1063/1.3600662},
      journal = {Applied Physics Letters},
      volume = {98},
      number = {25},
      pages = {253104}
    }
    
  • DOI BibTeX
    E.M. Clarke, P. Zuliani
    Statistical Model Checking for Cyber-Physical Systems
    in Automated Technology for Verification and Analysis, Lecture Notes in Computer Science 6996, p.1-12, 2011
    @INCOLLECTION{Clarke2011,
      title = {Statistical Model Checking for Cyber-Physical Systems},
      author = {Clarke, Edmund M. and Zuliani, Paolo},
      year = 2011,
      doi = {10.1007/978-3-642-24372-1_1},
      booktitle = {Automated Technology for Verification and Analysis},
      publisher = {Springer Berlin Heidelberg},
      volume = {6996},
      series = {Lecture Notes in Computer Science},
      pages = {1--12}
    }
    
  • DOI BibTeX
    H.L.S. Younes, E.M. Clarke, P. Zuliani
    Statistical Verification of Probabilistic Properties with Unbounded Until
    in Formal Methods: Foundations and Applications, Lecture Notes in Computer Science 6527, p.144-160, 2011
    @INCOLLECTION{Younes2011,
      title = {Statistical Verification of Probabilistic Properties with Unbounded Until},
      author = {Younes, Håkan L. S. and Clarke, Edmund M. and Zuliani, Paolo},
      year = 2011,
      doi = {10.1007/978-3-642-19829-8_10},
      booktitle = {Formal Methods: Foundations and Applications},
      publisher = {Springer Berlin Heidelberg},
      volume = {6527},
      series = {Lecture Notes in Computer Science},
      pages = {144--160}
    }
    
  • BibTeX
    M. Kaiser, S. Varier
    Evolution and development of Brain Networks: From Caenorhabditis elegans to Homo sapiens
    in Network: Computation in Neural Systems, 22(1-4):143-147, 2011
    @ARTICLE{Kaiser2011a,
      title = {Evolution and development of Brain Networks: From Caenorhabditis elegans to Homo sapiens},
      author = {Kaiser, Marcus and Varier, Sreedevi},
      year = 2011,
      journal = {Network: Computation in Neural Systems},
      volume = {22},
      number = {1-4},
      pages = {143--147}
    }
    

2010

  • DOI BibTeX
    A.K. Roopun, J.D. Simonotto, M.L. Pierce, A. Jenkins, C. Nicholson, I.S. Schofield, R.G. Whittaker, M. Kaiser, M.A. Whittington, R.D. Traub, M.O. Cunningham
    A nonsynaptic mechanism underlying interictal discharges in human epileptic neocortex
    in Proceedings of the National Academy of Sciences, 107(1):338-343, January 2010
    @ARTICLE{Roopun2010,
      title = {A nonsynaptic mechanism underlying interictal discharges in human epileptic neocortex},
      author = {Roopun, A. K. and Simonotto, J. D. and Pierce, M. L. and Jenkins, A. and Nicholson, C. and Schofield, I. S. and Whittaker, R. G. and Kaiser, M. and Whittington, M. A. and Traub, R. D. and Cunningham, M. O.},
      year = 2010,
      doi = {10.1073/pnas.0912652107},
      month = jan,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {107},
      number = {1},
      pages = {338--343}
    }
    
  • DOI BibTeX
    A.L. Lister, R.S. Datta, O. Hofmann, R. Krause, M. Kuhn, B. Roth, R. Schneider
    Live Coverage of Scientific Conferences Using Web Technologies
    in PLoS Computational Biology, 6(1):e1000563, January 2010
    @ARTICLE{Lister2010a,
      title = {Live Coverage of Scientific Conferences Using Web Technologies},
      author = {Lister, Allyson L. and Datta, Ruchira S. and Hofmann, Oliver and Krause, Roland and Kuhn, Michael and Roth, Bettina and Schneider, Reinhard},
      year = 2010,
      doi = {10.1371/journal.pcbi.1000563},
      month = jan,
      journal = {PLoS Computational Biology},
      volume = {6},
      number = {1},
      pages = {e1000563}
    }
    
  • DOI BibTeX
    C. Lambert, C. Chang, M.J. Capeness, R.E. Sockett
    The First Bite— Profiling the Predatosome in the Bacterial Pathogen Bdellovibrio
    in PLoS ONE, 5(1):e8599, January 2010
    @ARTICLE{Lambert2010,
      title = {The First Bite— Profiling the Predatosome in the Bacterial Pathogen Bdellovibrio},
      author = {Lambert, Carey and Chang, Chien-Yi and Capeness, Michael J. and Sockett, R. Elizabeth},
      year = 2010,
      doi = {10.1371/journal.pone.0008599},
      month = jan,
      journal = {PLoS ONE},
      volume = {5},
      number = {1},
      pages = {e8599}
    }
    
  • DOI BibTeX
    A.L. Lister, R.S. Datta, O. Hofmann, R. Krause, M. Kuhn, B. Roth, R. Schneider
    Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009
    in PLoS Computational Biology, 6(1):e1000640, January 2010
    @ARTICLE{Lister2010,
      title = {Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009},
      author = {Lister, Allyson L. and Datta, Ruchira S. and Hofmann, Oliver and Krause, Roland and Kuhn, Michael and Roth, Bettina and Schneider, Reinhard},
      year = 2010,
      doi = {10.1371/journal.pcbi.1000640},
      month = jan,
      journal = {PLoS Computational Biology},
      volume = {6},
      number = {1},
      pages = {e1000640}
    }
    
  • DOI BibTeX
    H. Cao, F.J. Romero-Campero, S. Heeb, M. Cámara, N. Krasnogor
    Evolving cell models for systems and synthetic biology
    in Systems and Synthetic Biology, 4(1):55-84, March 2010
    @ARTICLE{Cao2010,
      title = {Evolving cell models for systems and synthetic biology},
      author = {Cao, Hongqing and Romero-Campero, Francisco J. and Heeb, Stephan and Cámara, Miguel and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/s11693-009-9050-7},
      month = mar,
      journal = {Systems and Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {55--84}
    }
    
  • DOI BibTeX
    R.E. Smith, M.K. Jiang, J. Bacardit, M. Stout, N. Krasnogor, J.D. Hirst
    A learning classifier system with mutual-information-based fitness
    in Evolutionary Intelligence, 3(1):31-50, March 2010
    @ARTICLE{Smith2010,
      title = {A learning classifier system with mutual-information-based fitness},
      author = {Smith, Robert Elliott and Jiang, Max Kun and Bacardit, Jaume and Stout, Michael and Krasnogor, Natalio and Hirst, Jonathan D.},
      year = 2010,
      doi = {10.1007/s12065-010-0037-9},
      month = mar,
      journal = {Evolutionary Intelligence},
      volume = {3},
      number = {1},
      pages = {31--50}
    }
    
  • DOI eprint data BibTeX
    P. Widera, J.M. Garibaldi, N. Krasnogor
    GP challenge: evolving energy function for protein structure prediction
    in Genetic Programming and Evolvable Machines, 11(1):61-88, March 2010
    @ARTICLE{Widera2010,
      title = {GP challenge: evolving energy function for protein structure prediction},
      author = {Widera, Paweł and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/s10710-009-9087-0},
      month = mar,
      journal = {Genetic Programming and Evolvable Machines},
      volume = {11},
      number = {1},
      pages = {61--88}
    }
    
  • DOI BibTeX
    M.T. Cooling, V. Rouilly, G. Misirli, J. Lawson, T. Yu, J. Hallinan, A. Wipat
    Standard virtual biological parts: a repository of modular modeling components for synthetic biology
    in Bioinformatics, 26(7):925-931, April 2010
    @ARTICLE{Cooling2010,
      title = {Standard virtual biological parts: a repository of modular modeling components for synthetic biology},
      author = {Cooling, M. T. and Rouilly, V. and Misirli, G. and Lawson, J. and Yu, T. and Hallinan, J. and Wipat, A.},
      year = 2010,
      doi = {10.1093/bioinformatics/btq063},
      month = apr,
      journal = {Bioinformatics},
      volume = {26},
      number = {7},
      pages = {925--931}
    }
    
  • DOI eprint BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, A. Valencia
    TopoGSA: network topological gene set analysis
    in Bioinformatics, 26(9):1271-1272, May 2010
    @ARTICLE{Glaab2010a,
      title = {TopoGSA: network topological gene set analysis},
      author = {Glaab, E. and Baudot, A. and Krasnogor, N. and Valencia, A.},
      year = 2010,
      doi = {10.1093/bioinformatics/btq131},
      month = may,
      journal = {Bioinformatics},
      volume = {26},
      number = {9},
      pages = {1271--1272}
    }
    
  • DOI BibTeX
    W. Stein, P. Andras
    Light-induced effects of a fluorescent voltage-sensitive dye on neuronal activity in the crab stomatogastric ganglion
    in Journal of Neuroscience Methods, 188(2):290-294, May 2010
    @ARTICLE{Stein2010,
      title = {Light-induced effects of a fluorescent voltage-sensitive dye on neuronal activity in the crab stomatogastric ganglion},
      author = {Stein, Wolfgang and Andras, Peter},
      year = 2010,
      doi = {10.1016/j.jneumeth.2010.03.003},
      month = may,
      journal = {Journal of Neuroscience Methods},
      volume = {188},
      number = {2},
      pages = {290--294}
    }
    
  • DOI BibTeX
    B.R. Kirkwood, L. Hurt, S. Amenga-Etego, C. Tawiah, C. Zandoh, S. Danso, C. Hurt, K. Edmond, Z. Hill, G. ten Asbroek, J. Fenty, S. Owusu-Agyei, O. Campbell, P. Arthur
    Effect of vitamin A supplementation in women of reproductive age on maternal survival in Ghana (ObaapaVitA): a cluster-randomised, placebo-controlled trial
    in The Lancet, 375(9726):1640-1649, May 2010
    @ARTICLE{Kirkwood2010,
      title = {Effect of vitamin A supplementation in women of reproductive age on maternal survival in Ghana (ObaapaVitA): a cluster-randomised, placebo-controlled trial},
      author = {Kirkwood, Betty R and Hurt, Lisa and Amenga-Etego, Seeba and Tawiah, Charlotte and Zandoh, Charles and Danso, Samuel and Hurt, Chris and Edmond, Karen and Hill, Zelee and ten Asbroek, Guus and Fenty, Justin and Owusu-Agyei, Seth and Campbell, Oona and Arthur, Paul},
      year = 2010,
      doi = {10.1016/S0140-6736(10)60311-X},
      month = may,
      journal = {The Lancet},
      volume = {375},
      number = {9726},
      pages = {1640--1649}
    }
    
  • DOI BibTeX
    M. Gheorghe, V. Manca, F.J. Romero-Campero
    Deterministic and stochastic P systems for modelling cellular processes
    in Natural Computing, 9(2):457-473, June 2010
    @ARTICLE{Gheorghe2010,
      title = {Deterministic and stochastic P systems for modelling cellular processes},
      author = {Gheorghe, Marian and Manca, Vincenzo and Romero-Campero, Francisco J.},
      year = 2010,
      doi = {10.1007/s11047-009-9158-4},
      month = jun,
      journal = {Natural Computing},
      volume = {9},
      number = {2},
      pages = {457--473}
    }
    
  • DOI eprint BibTeX
    A.A. Shah, G. Folino, N. Krasnogor
    Toward High-Throughput, Multicriteria Protein-Structure Comparison and Analysis
    in IEEE Transactions on NanoBioscience, 9(2):144-155, June 2010
    @ARTICLE{Shah2010,
      title = {Toward High-Throughput, Multicriteria Protein-Structure Comparison and Analysis},
      author = {Shah, Azhar Ali and Folino, Gianluigi and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1109/TNB.2010.2043851},
      month = jun,
      journal = {IEEE Transactions on NanoBioscience},
      volume = {9},
      number = {2},
      pages = {144--155}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Towards the Design of Heuristics by Means of Self-Assembly
    in Electronic Proceedings in Theoretical Computer Science, 26:135-146, June 2010
    @ARTICLE{Terrazas2010a,
      title = {Towards the Design of Heuristics by Means of Self-Assembly},
      author = {Terrazas, German and Landa-Silva, Dario and Krasnogor, Natalio},
      year = 2010,
      doi = {10.4204/EPTCS.26.13},
      month = jun,
      journal = {Electronic Proceedings in Theoretical Computer Science},
      volume = {26},
      pages = {135--146}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor
    Grammatical rules for the automated construction of heuristics
    in IEEE Congress on Evolutionary Computation, p.1-8, Barcelona, Spain, July 2010
    @INPROCEEDINGS{Terrazas2010,
      title = {Grammatical rules for the automated construction of heuristics},
      author = {Terrazas, German and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1109/CEC.2010.5586192},
      month = jul,
      booktitle = {IEEE Congress on Evolutionary Computation},
      pages = {1--8},
      address = {Barcelona, Spain}
    }
    
  • DOI BibTeX
    J.S. Hallinan, G. Misirli, A. Wipat
    Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits
    in 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology, p.768-774, Buenos Aires, August 2010
    @INPROCEEDINGS{Hallinan2010,
      title = {Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits},
      author = {Hallinan, J S and Misirli, G and Wipat, A},
      year = 2010,
      doi = {10.1109/IEMBS.2010.5626353},
      month = aug,
      booktitle = {2010 Annual International Conference of the IEEE Engineering in Medicine and Biology},
      pages = {768--774},
      address = {Buenos Aires}
    }
    
  • DOI eprint BibTeX
    D. Gilbert, A. Jaramillo, N. Krasnogor, V. de Lorenzo
    Synthetic biology gains momentum in Europe
    in Systems and Synthetic Biology, 4(3):145-147, September 2010
    @ARTICLE{Gilbert2010,
      title = {Synthetic biology gains momentum in Europe},
      author = {Gilbert, David and Jaramillo, Alfonso and Krasnogor, Natalio and de Lorenzo, Victor},
      year = 2010,
      doi = {10.1007/s11693-010-9065-0},
      month = sep,
      journal = {Systems and Synthetic Biology},
      volume = {4},
      number = {3},
      pages = {145--147}
    }
    
  • DOI BibTeX
    B.R. Kirkwood, L. Hurt, S. Amenga-Etego, C. Tawiah, C. Zandoh, S. Danso, C. Hurt, K. Edmond, Z. Hill, G. Ten Asbroek, J. Fenty, S. Owusu-Agyei, O. Campbell, P. Arthur
    Effect of Vitamin A Supplementation in Women of Reproductive Age on Maternal Survival in Ghana (ObaapaVita): A Cluster-Randomized, Placebo-Controlled Trial
    in Obstetrical & Gynecological Survey, 65(9):552-554, September 2010
    @ARTICLE{Kirkwood2010b,
      title = {Effect of Vitamin A Supplementation in Women of Reproductive Age on Maternal Survival in Ghana (ObaapaVita): A Cluster-Randomized, Placebo-Controlled Trial},
      author = {Kirkwood, Betty R. and Hurt, Lisa and Amenga-Etego, Seeba and Tawiah, Charlotte and Zandoh, Charles and Danso, Samuel and Hurt, Chris and Edmond, Karen and Hill, Zelee and Ten Asbroek, Guus and Fenty, Justin and Owusu-Agyei, Seth and Campbell, Oona and Arthur, Paul},
      year = 2010,
      doi = {10.1097/OGX.0b013e3182021d40},
      month = sep,
      journal = {Obstetrical & Gynecological Survey},
      volume = {65},
      number = {9},
      pages = {552--554}
    }
    
  • DOI eprint BibTeX
    J. Smaldon, F.J. Romero-Campero, F. Fernández Trillo, M. Gheorghe, C. Alexander, N. Krasnogor
    A computational study of liposome logic: towards cellular computing from the bottom up
    in Systems and Synthetic Biology, 4(3):157-179, September 2010
    @ARTICLE{Smaldon2010,
      title = {A computational study of liposome logic: towards cellular computing from the bottom up},
      author = {Smaldon, James and Romero-Campero, Francisco J. and Fernández Trillo, Francisco and Gheorghe, Marian and Alexander, Cameron and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/s11693-010-9060-5},
      month = sep,
      journal = {Systems and Synthetic Biology},
      volume = {4},
      number = {3},
      pages = {157--179}
    }
    
  • DOI BibTeX
    P. Lord, R. Stevens
    Adding a Little Reality to Building Ontologies for Biology
    in PLoS ONE, 5(9):e12258, September 2010
    @ARTICLE{Lord2010,
      title = {Adding a Little Reality to Building Ontologies for Biology},
      author = {Lord, Phillip and Stevens, Robert},
      year = 2010,
      doi = {10.1371/journal.pone.0012258},
      month = sep,
      journal = {PLoS ONE},
      volume = {5},
      number = {9},
      pages = {e12258}
    }
    
  • DOI BibTeX
    B.R. Kirkwood, A. Manu, C. Tawiah-Agyemang, G. ten Asbroek, T. Gyan, B. Weobong, R.E. Lewandowski, S. Soremekun, S. Danso, C. Pitt, K. Hanson, S. Owusu-Agyei, Z. Hill
    NEWHINTS cluster randomised trial to evaluate the impact on neonatal mortality in rural Ghana of routine home visits to provide a package of essential newborn care interventions in the third trimester of pregnancy and the first week of life: trial protocol
    in Trials, 11(1), December 2010
    @ARTICLE{Kirkwood2010a,
      title = {NEWHINTS cluster randomised trial to evaluate the impact on neonatal mortality in rural Ghana of routine home visits to provide a package of essential newborn care interventions in the third trimester of pregnancy and the first week of life: trial protocol},
      author = {Kirkwood, Betty R and Manu, Alexander and Tawiah-Agyemang, Charlotte and ten Asbroek, Guus and Gyan, Thomas and Weobong, Benedict and Lewandowski, R Eric and Soremekun, Seyi and Danso, Samuel and Pitt, Catherine and Hanson, Kara and Owusu-Agyei, Seth and Hill, Zelee},
      year = 2010,
      doi = {10.1186/1745-6215-11-58},
      month = dec,
      journal = {Trials},
      volume = {11},
      number = {1}
    
  • DOI BibTeX
    P. Zuliani, A. Platzer, E.M. Clarke
    Bayesian statistical model checking with application to Simulink/Stateflow verification
    in Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10, p.243, Stockholm, Sweden, 2010
    @INPROCEEDINGS{Zuliani2010,
      title = {Bayesian statistical model checking with application to Simulink/Stateflow verification},
      author = {Zuliani, Paolo and Platzer, André and Clarke, Edmund M.},
      year = 2010,
      doi = {10.1145/1755952.1755987},
      booktitle = {Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10},
      pages = {243},
      address = {Stockholm, Sweden}
    }
    
  • URL code BibTeX
    E. Glaab, J.M. Garibaldi, N. Krasnogor
    vrmlgen: An R Package for 3D Data Visualization on the Web
    in Journal of Statistical Software, 36(8):1-18, 2010
    @ARTICLE{Glaab2010b,
      title = {vrmlgen: An R Package for 3D Data Visualization on the Web},
      author = {Glaab, Enrico and Garibaldi, Jonathan Mark and Krasnogor, Natalio},
      year = 2010,
      url = {http://www.jstatsoft.org/v36/i08/},
      journal = {Journal of Statistical Software},
      volume = {36},
      number = {8},
      pages = {1--18}
    }
    
  • DOI BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, A. Valencia
    Extending pathways and processes using molecular interaction networks to analyse cancer genome data
    in BMC Bioinformatics, 11(1):597, 2010
    @ARTICLE{Glaab2010,
      title = {Extending pathways and processes using molecular interaction networks to analyse cancer genome data},
      author = {Glaab, Enrico and Baudot, Anaïs and Krasnogor, Natalio and Valencia, Alfonso},
      year = 2010,
      doi = {10.1186/1471-2105-11-597},
      journal = {BMC Bioinformatics},
      volume = {11},
      number = {1},
      pages = {597}
    }
    
  • DOI eprint BibTeX
    P. Widera, J. Bacardit, N. Krasnogor, C. García-Martínez, M. Lozano
    Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology
    in Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10, p.1991, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Widera2010a,
      title = {Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology},
      author = {Widera, Paweł and Bacardit, Jaume and Krasnogor, Natalio and García-Martínez, Carlos and Lozano, Manuel},
      year = 2010,
      doi = {10.1145/1830761.1830842},
      booktitle = {Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10},
      pages = {1991},
      address = {Portland, Oregon, USA}
    }
    
  • DOI eprint slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Speeding up the evaluation of evolutionary learning systems using GPGPUs
    in Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10, p.1039, Portland, Oregon, USA, 2010
    Best Paper Award in the GBML track
    @INPROCEEDINGS{Franco2010,
      title = {Speeding up the evaluation of evolutionary learning systems using GPGPUs},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2010,
      doi = {10.1145/1830483.1830672},
      note = {Best Paper Award in the GBML track},
      booktitle = {Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10},
      pages = {1039},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    G. Pasparakis, N. Krasnogor, L. Cronin, B.G. Davis, C. Alexander
    Controlled polymer synthesis—from biomimicry towards synthetic biology
    in Chem. Soc. Rev., 39(1):286-300, 2010
    @ARTICLE{Pasparakis2010,
      title = {Controlled polymer synthesis—from biomimicry towards synthetic biology},
      author = {Pasparakis, George and Krasnogor, Natalio and Cronin, Leroy and Davis, Benjamin G. and Alexander, Cameron},
      year = 2010,
      doi = {10.1039/B809333B},
      journal = {Chem. Soc. Rev.},
      volume = {39},
      number = {1},
      pages = {286--300}
    }
    
  • DOI
    M. Kaiser
    Optimal hierarchical modular topologies for producing limited sustained activation of neural networks
    in Frontiers in Neuroinformatics, available online since 2010
  • DOI BibTeX
    J. Bacardit, W. Browne, J. Drugowitsch, E. Bernadó-Mansilla, M.V. Butz
    Learning Classifier Systems
    Lecture Notes in Computer Science 6471, Springer Berlin Heidelberg, 2010
    @BOOK{Bacardit2010,
      title = {Learning Classifier Systems},
      author = {Bacardit, Jaume and Browne, Will and Drugowitsch, Jan and Bernadó-Mansilla, Ester and Butz, Martin V.},
      year = 2010,
      doi = {10.1007/978-3-642-17508-4},
      publisher = {Springer Berlin Heidelberg},
      volume = {6471},
      series = {Lecture Notes in Computer Science}
    }
    
  • DOI BibTeX
    H. Gong, P. Zuliani, A. Komuravelli, J.R. Faeder, E.M. Clarke
    Analysis and verification of the HMGB1 signaling pathway
    in BMC Bioinformatics, 11(Suppl 7):S10, 2010
    @ARTICLE{Gong2010,
      title = {Analysis and verification of the HMGB1 signaling pathway},
      author = {Gong, Haijun and Zuliani, Paolo and Komuravelli, Anvesh and Faeder, James R and Clarke, Edmund M},
      year = 2010,
      doi = {10.1186/1471-2105-11-S7-S10},
      journal = {BMC Bioinformatics},
      volume = {11},
      number = {Suppl 7},
      pages = {S10}
    }
    
  • DOI slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Analysing bioHEL using challenging boolean functions
    in Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10, p.1855, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Franco2010a,
      title = {Analysing bioHEL using challenging boolean functions},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2010,
      doi = {10.1145/1830761.1830817},
      booktitle = {Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10},
      pages = {1855},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    J. Twycross, L.R. Band, M.J. Bennett, J.R. King, N. Krasnogor
    Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study
    in BMC Systems Biology, 4(1):34, 2010
    @ARTICLE{Twycross2010,
      title = {Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study},
      author = {Twycross, Jamie and Band, Leah R and Bennett, Malcolm J and King, John R and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1186/1752-0509-4-34},
      journal = {BMC Systems Biology},
      volume = {4},
      number = {1},
      pages = {34}
    }
    
  • DOI BibTeX
    P. Lord
    An evolutionary approach to Function
    in Journal of Biomedical Semantics, 1(Suppl 1):S4, 2010
    @ARTICLE{Lord2010a,
      title = {An evolutionary approach to Function},
      author = {Lord, Phillip},
      year = 2010,
      doi = {10.1186/2041-1480-1-S1-S4},
      journal = {Journal of Biomedical Semantics},
      volume = {1},
      number = {Suppl 1},
      pages = {S4}
    }
    
  • DOI BibTeX
    C. García-Martínez, C. Lima, J. Twycross, N. Krasnogor, M. Lozano
    P system model optimisation by means of evolutionary based search algorithms
    in Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10, p.187, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Garcia-Martinez2010,
      title = {P system model optimisation by means of evolutionary based search algorithms},
      author = {García-Martínez, Carlos and Lima, Claudio and Twycross, Jamie and Krasnogor, Natalio and Lozano, Manuel},
      year = 2010,
      doi = {10.1145/1830483.1830517},
      booktitle = {Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10},
      pages = {187},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    M. Kaiser
    Hierarchy and dynamics of neural networks
    in Frontiers in Neuroinformatics, 4, 2010
    @ARTICLE{Kaiser2010a,
      title = {Hierarchy and dynamics of neural networks},
      author = {Kaiser, Marcus},
      year = 2010,
      doi = {10.3389/fninf.2010.00112},
      journal = {Frontiers in Neuroinformatics},
      volume = {4}
    
  • DOI BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2010), Studies in Computational Intelligence 284, p.89-100, 2010
    @INCOLLECTION{Terrazas2010b,
      title = {Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics},
      author = {Terrazas, Germán and Landa-Silva, Dario and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/978-3-642-12538-6_8},
      booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2010)},
      publisher = {Springer Berlin Heidelberg},
      volume = {284},
      series = {Studies in Computational Intelligence},
      pages = {89--100}
    }
    
  • DOI BibTeX
    A.R. Jones, A.L. Lister
    Managing Experimental Data Using FuGE
    in Proteome Bioinformatics, Methods in Molecular Biology 604, p.333-343, 2010
    @INCOLLECTION{Jones2010,
      title = {Managing Experimental Data Using FuGE},
      author = {Jones, Andrew R. and Lister, Allyson L.},
      year = 2010,
      doi = {10.1007/978-1-60761-444-9_23},
      booktitle = {Proteome Bioinformatics},
      publisher = {Humana Press},
      volume = {604},
      series = {Methods in Molecular Biology},
      pages = {333--343}
    }
    

2009

  • DOI BibTeX
    J. Hinks, J. Bush, P. Andras, J. Garratt, G. Pigott, A. Kennedy, T. Pless-Mulloli
    Views on chemical safety information and influences on chemical disposal behaviour in the UK
    in Science of The Total Environment, 407(4):1299-1306, February 2009
    @ARTICLE{Hinks2009,
      title = {Views on chemical safety information and influences on chemical disposal behaviour in the UK},
      author = {Hinks, J. and Bush, J. and Andras, P. and Garratt, J. and Pigott, G. and Kennedy, A. and Pless-Mulloli, T.},
      year = 2009,
      doi = {10.1016/j.scitotenv.2008.10.056},
      month = feb,
      journal = {Science of The Total Environment},
      volume = {407},
      number = {4},
      pages = {1299--1306}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, R.E. Smith, N. Krasnogor
    Prediction of topological contacts in proteins using learning classifier systems
    in Soft Computing, 13(3):245-258, February 2009
    @ARTICLE{Stout2009,
      title = {Prediction of topological contacts in proteins using learning classifier systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Smith, Robert E. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/s00500-008-0318-8},
      month = feb,
      journal = {Soft Computing},
      volume = {13},
      number = {3},
      pages = {245--258}
    }
    
  • DOI BibTeX
    J. Alcalá-Fdez, L. Sánchez, S. García, M.J. del Jesus, S. Ventura, J.M. Garrell, J. Otero, C. Romero, J. Bacardit, V.M. Rivas, J.C. Fernández, F. Herrera
    KEEL: a software tool to assess evolutionary algorithms for data mining problems
    in Soft Computing, 13(3):307-318, February 2009
    @ARTICLE{Alcala-Fdez2009,
      title = {KEEL: a software tool to assess evolutionary algorithms for data mining problems},
      author = {Alcalá-Fdez, J. and Sánchez, L. and García, S. and del Jesus, M. J. and Ventura, S. and Garrell, J. M. and Otero, J. and Romero, C. and Bacardit, J. and Rivas, V. M. and Fernández, J. C. and Herrera, F.},
      year = 2009,
      doi = {10.1007/s00500-008-0323-y},
      month = feb,
      journal = {Soft Computing},
      volume = {13},
      number = {3},
      pages = {307--318}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, E.K. Burke, N. Krasnogor
    Improving the scalability of rule-based evolutionary learning
    in Memetic Computing, 1(1):55-67, March 2009
    @ARTICLE{Bacardit2009,
      title = {Improving the scalability of rule-based evolutionary learning},
      author = {Bacardit, Jaume and Burke, Edmund K. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/s12293-008-0005-4},
      month = mar,
      journal = {Memetic Computing},
      volume = {1},
      number = {1},
      pages = {55--67}
    }
    
  • DOI eprint BibTeX
    L. Fiaschi, J.M. Garibaldi, N. Krasnogora
    A framework for the application of decision trees to the analysis of SNPs data
    in 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, p.106-113, Nashville, TN, USA, March 2009
    @INPROCEEDINGS{Fiaschi2009,
      title = {A framework for the application of decision trees to the analysis of SNPs data},
      author = {Fiaschi, Linda and Garibaldi, Jonathan M. and Krasnogora, Natalio},
      year = 2009,
      doi = {10.1109/CIBCB.2009.4925715},
      month = mar,
      booktitle = {2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology},
      pages = {106--113},
      address = {Nashville, TN, USA}
    }
    
  • DOI BibTeX
    P. Andras, B.G. Charlton
    Why are top universities losing their lead? An economics modelling-based approach
    in Science and Public Policy, 36(4):317-330, May 2009
    @ARTICLE{Andras2009a,
      title = {Why are top universities losing their lead? An economics modelling-based approach},
      author = {Andras, Peter and Charlton, Bruce G},
      year = 2009,
      doi = {10.3152/030234209X436563},
      month = may,
      journal = {Science and Public Policy},
      volume = {36},
      number = {4},
      pages = {317--330}
    }
    
  • DOI eprint BibTeX
    P. Widera, J.M. Garibaldi, N. Krasnogor
    Evolutionary design of the energy function for protein structure prediction
    in 2009 IEEE Congress on Evolutionary Computation, p.1305-1312, Trondheim, Norway, May 2009
    @INPROCEEDINGS{Widera2009,
      title = {Evolutionary design of the energy function for protein structure prediction},
      author = {Widera, Pawel and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1109/CEC.2009.4983095},
      month = may,
      booktitle = {2009 IEEE Congress on Evolutionary Computation},
      pages = {1305--1312},
      address = {Trondheim, Norway}
    }
    
  • DOI BibTeX
    R.M. F?chslin, H. Fellermann, A. Eriksson, H. Ziock
    Coarse graining and scaling in dissipative particle dynamics
    in The Journal of Chemical Physics, 130(21):214102, June 2009
    @ARTICLE{Fuchslin2009,
      title = {Coarse graining and scaling in dissipative particle dynamics},
      author = {F?chslin, Rudolf M. and Fellermann, Harold and Eriksson, Anders and Ziock, Hans-Joachim},
      year = 2009,
      doi = {10.1063/1.3143976},
      month = jun,
      journal = {The Journal of Chemical Physics},
      volume = {130},
      number = {21},
      pages = {214102}
    }
    
  • DOI BibTeX
    F.J. Romero-Campero, J. Twycross, M. Cámara, M. Bennett, M. Gheorghe, N. Krasnogor
    Modular Assembly Of Cell Systems Biology Models Using P Systems
    in International Journal of Foundations of Computer Science, 20(03):427-442, June 2009
    @ARTICLE{Romero-Campero2009,
      title = {Modular Assembly Of Cell Systems Biology Models Using P Systems},
      author = {Romero-Campero, Francisco J. and Twycross, Jamie and Cámara, Miguel and Bennett, Malcolm and Gheorghe, Marian and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1142/S0129054109006668},
      month = jun,
      journal = {International Journal of Foundations of Computer Science},
      volume = {20},
      number = {03},
      pages = {427--442}
    }
    
  • DOI BibTeX
    A.R. Jones, A.L. Lister, L. Hermida, P. Wilkinson, M. Eisenacher, K. Belhajjame, F. Gibson, P. Lord, M. Pocock, H. Rosenfelder, J. Santoyo-Lopez, A. Wipat, N.W. Paton
    Modeling and Managing Experimental Data Using FuGE
    in OMICS: A Journal of Integrative Biology, 13(3):239-251, June 2009
    @ARTICLE{Jones2009,
      title = {Modeling and Managing Experimental Data Using FuGE},
      author = {Jones, Andrew R. and Lister, Allyson L. and Hermida, Leandro and Wilkinson, Peter and Eisenacher, Martin and Belhajjame, Khalid and Gibson, Frank and Lord, Phil and Pocock, Matthew and Rosenfelder, Heiko and Santoyo-Lopez, Javier and Wipat, Anil and Paton, Norman W.},
      year = 2009,
      doi = {10.1089/omi.2008.0080},
      month = jun,
      journal = {OMICS: A Journal of Integrative Biology},
      volume = {13},
      number = {3},
      pages = {239--251}
    }
    
  • DOI BibTeX
    N.Q. Huy, O.Y. Soon, L.M. Hiot, N. Krasnogor
    Adaptive Cellular Memetic Algorithms
    in Evolutionary Computation, 17(2):231-256, June 2009
    @ARTICLE{Huy2009,
      title = {Adaptive Cellular Memetic Algorithms},
      author = {Huy, Nguyen Quang and Soon, Ong Yew and Hiot, Lim Meng and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1162/evco.2009.17.2.231},
      month = jun,
      journal = {Evolutionary Computation},
      volume = {17},
      number = {2},
      pages = {231--256}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    The Sleep Elaboration–Awake Pruning (SEAP) theory of memory: Long term memories grow in complexity during sleep and undergo selection while awake. Clinical, psychopharmacological and creative implications
    in Medical Hypotheses, 73(1):1-4, July 2009
    @ARTICLE{Charlton2009,
      title = {The Sleep Elaboration–Awake Pruning (SEAP) theory of memory: Long term memories grow in complexity during sleep and undergo selection while awake. Clinical, psychopharmacological and creative implications},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2009,
      doi = {10.1016/j.mehy.2009.03.005},
      month = jul,
      journal = {Medical Hypotheses},
      volume = {73},
      number = {1},
      pages = {1--4}
    }
    
  • DOI BibTeX
    L.d.F. Costa, F.A. Rodrigues, C.C. Hilgetag, M. Kaiser
    Beyond the average: Detecting global singular nodes from local features in complex networks
    in EPL (Europhysics Letters), 87(1):18008, July 2009
    @ARTICLE{Costa2009,
      title = {Beyond the average: Detecting global singular nodes from local features in complex networks},
      author = {Costa, L. da F. and Rodrigues, F. A. and Hilgetag, C. C. and Kaiser, M.},
      year = 2009,
      doi = {10.1209/0295-5075/87/18008},
      month = jul,
      journal = {EPL (Europhysics Letters)},
      volume = {87},
      number = {1},
      pages = {18008}
    }
    
  • DOI eprint BibTeX
    L. Li, J.M. Garibaldi, N. Krasnogor
    Automated self-assembly programming paradigm: The impact of network topology
    in International Journal of Intelligent Systems, 24(7):793-817, July 2009
    @ARTICLE{Li2009,
      title = {Automated self-assembly programming paradigm: The impact of network topology},
      author = {Li, Lin and Garibaldi, Jonathan M and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1002/int.20361},
      month = jul,
      journal = {International Journal of Intelligent Systems},
      volume = {24},
      number = {7},
      pages = {793--817}
    }
    
  • DOI BibTeX
    C. Pesquita, D. Faria, A.O. Falcão, P. Lord, F.M. Couto
    Semantic Similarity in Biomedical Ontologies
    in PLoS Computational Biology, 5(7):e1000443, July 2009
    @ARTICLE{Pesquita2009,
      title = {Semantic Similarity in Biomedical Ontologies},
      author = {Pesquita, Catia and Faria, Daniel and Falcão, André O. and Lord, Phillip and Couto, Francisco M.},
      year = 2009,
      doi = {10.1371/journal.pcbi.1000443},
      month = jul,
      journal = {PLoS Computational Biology},
      volume = {5},
      number = {7},
      pages = {e1000443}
    }
    
  • DOI eprint BibTeX
    G. Folino, A.A. Shah, N. Kransnogor
    On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid
    in 2009 22nd IEEE International Symposium on Computer-Based Medical Systems, p.1-8, Albuquerque, NM, USA, August 2009
    @INPROCEEDINGS{Folino2009,
      title = {On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid},
      author = {Folino, Gianluigi and Shah, Azhar Ali and Kransnogor, Natalio},
      year = 2009,
      doi = {10.1109/CBMS.2009.5255328},
      month = aug,
      booktitle = {2009 22nd IEEE International Symposium on Computer-Based Medical Systems},
      pages = {1--8},
      address = {Albuquerque, NM, USA}
    }
    
  • DOI BibTeX
    J. Marcelino, M. Kaiser
    Reducing influenza spreading over the airline network
    in PLoS Currents, 1:RRN1005, August 2009
    @ARTICLE{Marcelino2009,
      title = {Reducing influenza spreading over the airline network},
      author = {Marcelino, Jose and Kaiser, Marcus},
      year = 2009,
      doi = {10.1371/currents.RRN1005},
      month = aug,
      journal = {PLoS Currents},
      volume = {1},
      pages = {RRN1005}
    }
    
  • DOI BibTeX
    A. Moya, N. Krasnogor, J. Peretó, A. Latorre
    Goethe's dream. Challenges and opportunities for synthetic biology
    in EMBO reports, 10(S1):S28-S32, August 2009
    @ARTICLE{Moya2009,
      title = {Goethe's dream. Challenges and opportunities for synthetic biology},
      author = {Moya, Andrés and Krasnogor, Natalio and Peretó, Juli and Latorre, Amparo},
      year = 2009,
      doi = {10.1038/embor.2009.120},
      month = aug,
      journal = {EMBO reports},
      volume = {10},
      number = {S1},
      pages = {S28--S32}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems
    in Evolutionary Computation, 17(3):307-342, September 2009
    @ARTICLE{Bacardit2009c,
      title = {Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1162/evco.2009.17.3.307},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {17},
      number = {3},
      pages = {307--342}
    }
    
  • DOI BibTeX
    P. Zuliani
    Reasoning about faulty quantum programs
    in Acta Informatica, 46(6):403-432, October 2009
    @ARTICLE{Zuliani2009,
      title = {Reasoning about faulty quantum programs},
      author = {Zuliani, Paolo},
      year = 2009,
      doi = {10.1007/s00236-009-0100-0},
      month = oct,
      journal = {Acta Informatica},
      volume = {46},
      number = {6},
      pages = {403--432}
    }
    
  • DOI BibTeX
    A.L. Lister, M. Pocock, M. Taschuk, A. Wipat
    Saint: a lightweight integration environment for model annotation
    in Bioinformatics, 25(22):3026-3027, November 2009
    @ARTICLE{Lister2009a,
      title = {Saint: a lightweight integration environment for model annotation},
      author = {Lister, A. L. and Pocock, M. and Taschuk, M. and Wipat, A.},
      year = 2009,
      doi = {10.1093/bioinformatics/btp523},
      month = nov,
      journal = {Bioinformatics},
      volume = {25},
      number = {22},
      pages = {3026--3027}
    }
    
  • DOI BibTeX
    P. Ribeiro, J. Simonotto, M. Kaiser, F. Silva
    Parallel calculation of multi-electrode array correlation networks
    in Journal of Neuroscience Methods, 184(2):357-364, November 2009
    @ARTICLE{Ribeiro2009,
      title = {Parallel calculation of multi-electrode array correlation networks},
      author = {Ribeiro, Pedro and Simonotto, Jennifer and Kaiser, Marcus and Silva, Fernando},
      year = 2009,
      doi = {10.1016/j.jneumeth.2009.08.001},
      month = nov,
      journal = {Journal of Neuroscience Methods},
      volume = {184},
      number = {2},
      pages = {357--364}
    }
    
  • DOI BibTeX
    P. Andras
    Molecular neuroimaging – A proposal for a novel approach to high resolution recording of neural activity in nervous systems
    in Medical Hypotheses, 73(6):876-882, December 2009
    @ARTICLE{Andras2009,
      title = {Molecular neuroimaging – A proposal for a novel approach to high resolution recording of neural activity in nervous systems},
      author = {Andras, Peter},
      year = 2009,
      doi = {10.1016/j.mehy.2009.06.056},
      month = dec,
      journal = {Medical Hypotheses},
      volume = {73},
      number = {6},
      pages = {876--882}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag, A. van Ooyen
    A Simple Rule for Axon Outgrowth and Synaptic Competition Generates Realistic Connection Lengths and Filling Fractions
    in Cerebral Cortex, 19(12):3001-3010, December 2009
    @ARTICLE{Kaiser2009,
      title = {A Simple Rule for Axon Outgrowth and Synaptic Competition Generates Realistic Connection Lengths and Filling Fractions},
      author = {Kaiser, M. and Hilgetag, C. C. and van Ooyen, A.},
      year = 2009,
      doi = {10.1093/cercor/bhp071},
      month = dec,
      journal = {Cerebral Cortex},
      volume = {19},
      number = {12},
      pages = {3001--3010}
    }
    
  • DOI BibTeX
    P. Ribeiro, F. Silva, M. Kaiser
    Strategies for Network Motifs Discovery
    in 2009 Fifth IEEE International Conference on e-Science, p.80-87, Oxford, United Kingdom, December 2009
    @INPROCEEDINGS{Ribeiro2009a,
      title = {Strategies for Network Motifs Discovery},
      author = {Ribeiro, Pedro and Silva, Fernando and Kaiser, Marcus},
      year = 2009,
      doi = {10.1109/e-Science.2009.20},
      month = dec,
      booktitle = {2009 Fifth IEEE International Conference on e-Science},
      pages = {80--87},
      address = {Oxford, United Kingdom}
    }
    
  • DOI BibTeX
    A. Lister, V. Charoensawan, S. De, K. James, S.C. Janga, J. Huppert
    Interfacing systems biology and synthetic biology
    in Genome Biology, 10(6):309, 2009
    @ARTICLE{Lister2009,
      title = {Interfacing systems biology and synthetic biology},
      author = {Lister, Allyson and Charoensawan, Varodom and De, Subhajyoti and James, Katherine and Janga, Sarath Chandra and Huppert, Julian},
      year = 2009,
      doi = {10.1186/gb-2009-10-6-309},
      journal = {Genome Biology},
      volume = {10},
      number = {6},
      pages = {309}
    }
    
  • DOI BibTeX
    F.J. Romero-Campero, J. Twycross, H. Cao, J. Blakes, N. Krasnogor
    A Multiscale Modeling Framework Based on P Systems
    in Membrane Computing, Lecture Notes in Computer Science 5391, p.63-77, 2009
    @INCOLLECTION{Romero-Campero2009a,
      title = {A Multiscale Modeling Framework Based on P Systems},
      author = {Romero-Campero, Francisco José and Twycross, Jamie and Cao, Hongqing and Blakes, Jonathan and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/978-3-540-95885-7_5},
      booktitle = {Membrane Computing},
      publisher = {Springer Berlin Heidelberg},
      volume = {5391},
      series = {Lecture Notes in Computer Science},
      pages = {63--77}
    }
    
  • DOI BibTeX
    S.K. Jha, E.M. Clarke, C.J. Langmead, A. Legay, A. Platzer, P. Zuliani
    A Bayesian Approach to Model Checking Biological Systems
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 5688, p.218-234, 2009
    @INCOLLECTION{Jha2009,
      title = {A Bayesian Approach to Model Checking Biological Systems},
      author = {Jha, Sumit K. and Clarke, Edmund M. and Langmead, Christopher J. and Legay, Axel and Platzer, André and Zuliani, Paolo},
      year = 2009,
      doi = {10.1007/978-3-642-03845-7_15},
      booktitle = {Computational Methods in Systems Biology},
      publisher = {Springer Berlin Heidelberg},
      volume = {5688},
      series = {Lecture Notes in Computer Science},
      pages = {218--234}
    }
    
  • DOI BibTeX
    F.J. Romero-Campero, N. Krasnogor
    An Approach to the Engineering of Cellular Models Based on P Systems
    in Mathematical Theory and Computational Practice, Lecture Notes in Computer Science 5635, p.430-436, 2009
    @INCOLLECTION{Romero-Campero2009b,
      title = {An Approach to the Engineering of Cellular Models Based on P Systems},
      author = {Romero-Campero, Francisco J. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/978-3-642-03073-4_44},
      booktitle = {Mathematical Theory and Computational Practice},
      publisher = {Springer Berlin Heidelberg},
      volume = {5635},
      series = {Lecture Notes in Computer Science},
      pages = {430--436}
    }
    
  • DOI BibTeX
    K. James, A. Wipat, J. Hallinan
    Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes
    in Data Integration in the Life Sciences, Lecture Notes in Computer Science 5647, p.31-46, 2009
    @INCOLLECTION{James2009,
      title = {Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes},
      author = {James, Katherine and Wipat, Anil and Hallinan, Jennifer},
      year = 2009,
      doi = {10.1007/978-3-642-02879-3_4},
      booktitle = {Data Integration in the Life Sciences},
      publisher = {Springer Berlin Heidelberg},
      volume = {5647},
      series = {Lecture Notes in Computer Science},
      pages = {31--46}
    }
    
  • DOI BibTeX
    E. Glaab, J.M. Garibaldi, N. Krasnogor
    ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
    in BMC Bioinformatics, 10(1):358, 2009
    @ARTICLE{Glaab2009,
      title = {ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization},
      author = {Glaab, Enrico and Garibaldi, Jonathan M and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1186/1471-2105-10-358},
      journal = {BMC Bioinformatics},
      volume = {10},
      number = {1},
      pages = {358}
    }
    
  • DOI BibTeX
    G. Pasparakis, M. Vamvakaki, N. Krasnogor, C. Alexander
    Diol–boronic acid complexes integrated by responsive polymers—a route to chemical sensing and logic operations
    in Soft Matter, 5(20):3839, 2009
    @ARTICLE{Pasparakis2009,
      title = {Diol–boronic acid complexes integrated by responsive polymers—a route to chemical sensing and logic operations},
      author = {Pasparakis, George and Vamvakaki, Maria and Krasnogor, Natalio and Alexander, Cameron},
      year = 2009,
      doi = {10.1039/b911341j},
      journal = {Soft Matter},
      volume = {5},
      number = {20},
      pages = {3839}
    }
    
  • DOI BibTeX
    J. Smaldon, N. Krasnogor, C. Alexander, M. Gheorghe
    Liposome logic
    in Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09, p.161, Montreal, Québec, Canada, 2009
    @INPROCEEDINGS{Smaldon2009,
      title = {Liposome logic},
      author = {Smaldon, James and Krasnogor, Natalio and Alexander, Cameron and Gheorghe, Marian},
      year = 2009,
      doi = {10.1145/1569901.1569924},
      booktitle = {Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09},
      pages = {161},
      address = {Montreal, Québec, Canada}
    }
    
  • DOI BibTeX
    R. Stevens, P. Lord
    Application of Ontologies in Bioinformatics
    in Handbook on Ontologies, p.735-756, 2009
    @INCOLLECTION{Stevens2009,
      title = {Application of Ontologies in Bioinformatics},
      author = {Stevens, Robert and Lord, Phillip},
      year = 2009,
      doi = {10.1007/978-3-540-92673-3_33},
      booktitle = {Handbook on Ontologies},
      publisher = {Springer Berlin Heidelberg},
      pages = {735--756}
    }
    
  • DOI BibTeX
    N. Krasnogor, M.B. Melián-Batista, J.A.M. Pérez, J.M. Moreno-Vega, D.A. Pelta
    Nature Inspired Cooperative Strategies for Optimization (NICSO 2008)
    Studies in Computational Intelligence 236, Springer Berlin Heidelberg, 2009
    @BOOK{Krasnogor2009,
      title = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2008)},
      author = {Krasnogor, Natalio and Melián-Batista, María Belén and Pérez, José Andrés Moreno and Moreno-Vega, J. Marcos and Pelta, David Alejandro},
      year = 2009,
      doi = {10.1007/978-3-642-03211-0},
      publisher = {Springer Berlin Heidelberg},
      volume = {236},
      series = {Studies in Computational Intelligence}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    A mixed discrete-continuous attribute list representation for large scale classification domains
    in Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09, p.1155, Montreal, Québec, Canada, 2009
    @INPROCEEDINGS{Bacardit2009b,
      title = {A mixed discrete-continuous attribute list representation for large scale classification domains},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1145/1569901.1570057},
      booktitle = {Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09},
      pages = {1155},
      address = {Montreal, Québec, Canada}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, A. Valencia, R.E. Smith, N. Krasnogor
    Automated Alphabet Reduction for Protein Datasets
    in BMC Bioinformatics, 10(1):6, 2009
    @ARTICLE{Bacardit2009a,
      title = {Automated Alphabet Reduction for Protein Datasets},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D and Valencia, Alfonso and Smith, Robert E and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1186/1471-2105-10-6},
      journal = {BMC Bioinformatics},
      volume = {10},
      number = {1},
      pages = {6}
    }
    

2008

  • DOI BibTeX
    B.G. Charlton, P. Andras
    Stimulating revolutionary science with mega-cash prizes
    in Medical Hypotheses, 70(4):709-713, January 2008
    @ARTICLE{Charlton2008a,
      title = {Stimulating revolutionary science with mega-cash prizes},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2008,
      doi = {10.1016/j.mehy.2008.01.001},
      month = jan,
      journal = {Medical Hypotheses},
      volume = {70},
      number = {4},
      pages = {709--713}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    ‘Down-shifting’ among top UK scientists? – The decline of ‘revolutionary science’ and the rise of ‘normal science’ in the UK compared with the USA
    in Medical Hypotheses, 70(3):465-472, January 2008
    @ARTICLE{Charlton2008,
      title = {‘Down-shifting’ among top UK scientists? – The decline of ‘revolutionary science’ and the rise of ‘normal science’ in the UK compared with the USA},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2008,
      doi = {10.1016/j.mehy.2007.12.004},
      month = jan,
      journal = {Medical Hypotheses},
      volume = {70},
      number = {3},
      pages = {465--472}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, A. Shah, D. Barthel, P. Lukasiak, J. Blazewicz
    Web and Grid Technologies in Bioinformatics, Computational and Systems Biology: A Review
    in Current Bioinformatics, 3(1):10-31, January 2008
    @ARTICLE{Krasnogor2008b,
      title = {Web and Grid Technologies in Bioinformatics, Computational and Systems Biology: A Review},
      author = {Krasnogor, Natalio and Shah, Azhar and Barthel, Daniel and Lukasiak, Piotr and Blazewicz, Jacek},
      year = 2008,
      doi = {10.2174/157489308783329850},
      month = jan,
      journal = {Current Bioinformatics},
      volume = {3},
      number = {1},
      pages = {10--31}
    }
    
  • DOI BibTeX
    M. Gheorghe, N. Krasnogor, M. Camara
    P systems applications to systems biology
    in Biosystems, 91(3):435-437, March 2008
    @ARTICLE{Gheorghe2008,
      title = {P systems applications to systems biology},
      author = {Gheorghe, Marian and Krasnogor, Natalio and Camara, Miguel},
      year = 2008,
      doi = {10.1016/j.biosystems.2007.07.002},
      month = mar,
      journal = {Biosystems},
      volume = {91},
      number = {3},
      pages = {435--437}
    }
    
  • DOI BibTeX
    N. Krasnogor, J. Smith
    Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective
    in Journal of Mathematical Modelling and Algorithms, 7(1):3-24, March 2008
    @ARTICLE{Krasnogor2008,
      title = {Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective},
      author = {Krasnogor, Natalio and Smith, Jim},
      year = 2008,
      doi = {10.1007/s10852-007-9070-9},
      month = mar,
      journal = {Journal of Mathematical Modelling and Algorithms},
      volume = {7},
      number = {1},
      pages = {3--24}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, N. Krasnogor
    Prediction of recursive convex hull class assignments for protein residues
    in Bioinformatics, 24(7):916-923, April 2008
    @ARTICLE{Stout2008,
      title = {Prediction of recursive convex hull class assignments for protein residues},
      author = {Stout, M. and Bacardit, J. and Hirst, J. D. and Krasnogor, N.},
      year = 2008,
      doi = {10.1093/bioinformatics/btn050},
      month = apr,
      journal = {Bioinformatics},
      volume = {24},
      number = {7},
      pages = {916--923}
    }
    
  • DOI BibTeX
    S. Fitch, T. Jackson, P. Andras, C. Robson
    Unsupervised segmentation of cell nuclei using geometric models
    in 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, p.728-731, Paris, France, May 2008
    @INPROCEEDINGS{Fitch2008,
      title = {Unsupervised segmentation of cell nuclei using geometric models},
      author = {Fitch, Shaun and Jackson, Trevor and Andras, Peter and Robson, Craig},
      year = 2008,
      doi = {10.1109/ISBI.2008.4541099},
      month = may,
      booktitle = {2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
      pages = {728--731},
      address = {Paris, France}
    }
    
  • DOI BibTeX
    D. Field, G. Garrity, T. Gray, N. Morrison, J. Selengut, P. Sterk, T. Tatusova, N. Thomson, M.J. Allen, S.V. Angiuoli, M. Ashburner, N. Axelrod, S. Baldauf, S. Ballard, J. Boore, G. Cochrane, J. Cole, P. Dawyndt, P. De Vos, C. dePamphilis, R. Edwards, N. Faruque, R. Feldman, J. Gilbert, P. Gilna, F.O. Glöckner, P. Goldstein, R. Guralnick, D. Haft, D. Hancock, H. Hermjakob, C. Hertz-Fowler, et al.
    The minimum information about a genome sequence (MIGS) specification
    in Nature Biotechnology, 26(5):541-547, May 2008
    @ARTICLE{Field2008a,
      title = {The minimum information about a genome sequence (MIGS) specification},
      author = {Field, Dawn and Garrity, George and Gray, Tanya and Morrison, Norman and Selengut, Jeremy and Sterk, Peter and Tatusova, Tatiana and Thomson, Nicholas and Allen, Michael J and Angiuoli, Samuel V and Ashburner, Michael and Axelrod, Nelson and Baldauf, Sandra and Ballard, Stuart and Boore, Jeffrey and Cochrane, Guy and Cole, James and Dawyndt, Peter and De Vos, Paul and dePamphilis, Claude and Edwards, Robert and Faruque, Nadeem and Feldman, Robert and Gilbert, Jack and Gilna, Paul and Glöckner, Frank Oliver and Goldstein, Philip and Guralnick, Robert and Haft, Dan and Hancock, David and Hermjakob, Henning and Hertz-Fowler, Christiane and Hugenholtz, Phil and Joint, Ian and Kagan, Leonid and Kane, Matthew and Kennedy, Jessie and Kowalchuk, George and Kottmann, Renzo and Kolker, Eugene and Kravitz, Saul and Kyrpides, Nikos and Leebens-Mack, Jim and Lewis, Suzanna E and Li, Kelvin and Lister, Allyson L and Lord, Phillip and Maltsev, Natalia and Markowitz, Victor and Martiny, Jennifer and Methe, Barbara and Mizrachi, Ilene and Moxon, Richard and Nelson, Karen and Parkhill, Julian and Proctor, Lita and White, Owen and Sansone, Susanna-Assunta and Spiers, Andrew and Stevens, Robert and Swift, Paul and Taylor, Chris and Tateno, Yoshio and Tett, Adrian and Turner, Sarah and Ussery, David and Vaughan, Bob and Ward, Naomi and Whetzel, Trish and San Gil, Ingio and Wilson, Gareth and Wipat, Anil},
      year = 2008,
      doi = {10.1038/nbt1360},
      month = may,
      journal = {Nature Biotechnology},
      volume = {26},
      number = {5},
      pages = {541--547}
    }
    
  • DOI BibTeX
    D. Field, F.O. Glöckner, G.M. Garrity, T. Gray, P. Sterk, G. Cochrane, R. Vaughan, E. Kolker, R. Kottmann, N. Kyrpides, S. Angiuoli, P. Dawyndt, R. Guralnick, P. Goldstein, N. Hall, L. Hirschman, S. Kravitz, A.L. Lister, V. Markowitz, N. Thomson, T. Whetzel
    Meeting Report: The Fourth Genomic Standards Consortium (GSC) Workshop
    in OMICS: A Journal of Integrative Biology, 12(2):101-108, June 2008
    @ARTICLE{Field2008,
      title = {Meeting Report: The Fourth Genomic Standards Consortium (GSC) Workshop},
      author = {Field, Dawn and Glöckner, Frank Oliver and Garrity, George M. and Gray, Tanya and Sterk, Peter and Cochrane, Guy and Vaughan, Robert and Kolker, Eugene and Kottmann, Renzo and Kyrpides, Nikos and Angiuoli, Sam and Dawyndt, Peter and Guralnick, Robert and Goldstein, Philip and Hall, Neil and Hirschman, Lynette and Kravitz, Saul and Lister, Allyson L. and Markowitz, Victor and Thomson, Nick and Whetzel, Trish},
      year = 2008,
      doi = {10.1089/omi.2008.0014},
      month = jun,
      journal = {OMICS: A Journal of Integrative Biology},
      volume = {12},
      number = {2},
      pages = {101--108}
    }
    
  • DOI BibTeX
    P. Andras
    Uncertainty in iterated cooperation games
    in 2008 IEEE Congress on Evolutionary Computation (IEEE World Congress on Computational Intelligence), p.593-599, Hong Kong, China, June 2008
    @INPROCEEDINGS{Andras2008,
      title = {Uncertainty in iterated cooperation games},
      author = {Andras, Peter},
      year = 2008,
      doi = {10.1109/CEC.2008.4630856},
      month = jun,
      booktitle = {2008 IEEE Congress on Evolutionary Computation (IEEE World Congress on Computational Intelligence)},
      pages = {593--599},
      address = {Hong Kong, China}
    }
    
  • DOI eprint BibTeX
    M. Oakley, D. Barthel, Y. Bykov, J. Garibaldi, E. Burke, N. Krasnogor, J. Hirst
    Search Strategies in Structural Bioinformatics
    in Current Protein & Peptide Science, 9(3):260-274, June 2008
    @ARTICLE{Oakley2008,
      title = {Search Strategies in Structural Bioinformatics},
      author = {Oakley, Mark and Barthel, Daniel and Bykov, Yuri and Garibaldi, Jonathan and Burke, Edmund and Krasnogor, Natalio and Hirst, Jonathan},
      year = 2008,
      doi = {10.2174/138920308784534032},
      month = jun,
      journal = {Current Protein & Peptide Science},
      volume = {9},
      number = {3},
      pages = {260--274}
    }
    
  • DOI BibTeX
    S. Sansone, P. Rocca-Serra, M. Brandizi, A. Brazma, D. Field, J. Fostel, A.G. Garrow, J. Gilbert, F. Goodsaid, N. Hardy, P. Jones, A. Lister, M. Miller, N. Morrison, T. Rayner, N. Sklyar, C. Taylor, W. Tong, G. Warner, S. Wiemann
    The First RSBI (ISA-TAB) Workshop: “Can a Simple Format Work for Complex Studies?”
    in OMICS: A Journal of Integrative Biology, 12(2):143-149, June 2008
    @ARTICLE{Sansone2008,
      title = {The First RSBI (ISA-TAB) Workshop: “Can a Simple Format Work for Complex Studies?”},
      author = {Sansone, Susanna-Assunta and Rocca-Serra, Philippe and Brandizi, Marco and Brazma, Alvis and Field, Dawn and Fostel, Jennifer and Garrow, Andrew G. and Gilbert, Jack and Goodsaid, Federico and Hardy, Nigel and Jones, Phil and Lister, Allyson and Miller, Michael and Morrison, Norman and Rayner, Tim and Sklyar, Nataliya and Taylor, Chris and Tong, Weida and Warner, Guy and Wiemann, Stefan},
      year = 2008,
      doi = {10.1089/omi.2008.0019},
      month = jun,
      journal = {OMICS: A Journal of Integrative Biology},
      volume = {12},
      number = {2},
      pages = {143--149}
    }
    
  • DOI BibTeX
    S. Atkinson, C. Chang, H.L. Patrick, C.M.F. Buckley, Y. Wang, R.E. Sockett, M. Cámara, P. Williams
    Functional interplay between the Yersinia pseudotuberculosis YpsRI and YtbRI quorum sensing systems modulates swimming motility by controlling expression of flhDC and fliA
    in Molecular Microbiology, 69(1):137-151, July 2008
    @ARTICLE{Atkinson2008,
      title = {Functional interplay between the Yersinia pseudotuberculosis YpsRI and YtbRI quorum sensing systems modulates swimming motility by controlling expression of flhDC and fliA },
      author = {Atkinson, Steve and Chang, Chien-Yi and Patrick, Hannah L. and Buckley, Catherine M. F. and Wang, Yao and Sockett, R. Elizabeth and Cámara, Miguel and Williams, Paul},
      year = 2008,
      doi = {10.1111/j.1365-2958.2008.06268.x},
      month = jul,
      journal = {Molecular Microbiology},
      volume = {69},
      number = {1},
      pages = {137--151}
    }
    
  • DOI BibTeX
    C.F. Taylor, D. Field, S. Sansone, J. Aerts, R. Apweiler, M. Ashburner, C.A. Ball, P. Binz, M. Bogue, T. Booth, A. Brazma, R.R. Brinkman, A. Michael Clark, E.W. Deutsch, O. Fiehn, J. Fostel, P. Ghazal, F. Gibson, T. Gray, G. Grimes, J.M. Hancock, N.W. Hardy, H. Hermjakob, R.K. Julian, M. Kane, C. Kettner, C. Kinsinger, E. Kolker, M. Kuiper, N.L. Novère, J. Leebens-Mack, S.E. Lewis, et al.
    Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    in Nature Biotechnology, 26(8):889-896, August 2008
    @ARTICLE{Taylor2008,
      title = {Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project},
      author = {Taylor, Chris F and Field, Dawn and Sansone, Susanna-Assunta and Aerts, Jan and Apweiler, Rolf and Ashburner, Michael and Ball, Catherine A and Binz, Pierre-Alain and Bogue, Molly and Booth, Tim and Brazma, Alvis and Brinkman, Ryan R and Michael Clark, Adam and Deutsch, Eric W and Fiehn, Oliver and Fostel, Jennifer and Ghazal, Peter and Gibson, Frank and Gray, Tanya and Grimes, Graeme and Hancock, John M and Hardy, Nigel W and Hermjakob, Henning and Julian, Randall K and Kane, Matthew and Kettner, Carsten and Kinsinger, Christopher and Kolker, Eugene and Kuiper, Martin and Novère, Nicolas Le and Leebens-Mack, Jim and Lewis, Suzanna E and Lord, Phillip and Mallon, Ann-Marie and Marthandan, Nishanth and Masuya, Hiroshi and McNally, Ruth and Mehrle, Alexander and Morrison, Norman and Orchard, Sandra and Quackenbush, John and Reecy, James M and Robertson, Donald G and Rocca-Serra, Philippe and Rodriguez, Henry and Rosenfelder, Heiko and Santoyo-Lopez, Javier and Scheuermann, Richard H and Schober, Daniel and Smith, Barry and Snape, Jason and Stoeckert, Christian J and Tipton, Keith and Sterk, Peter and Untergasser, Andreas and Vandesompele, Jo and Wiemann, Stefan},
      year = 2008,
      doi = {10.1038/nbt.1411},
      month = aug,
      journal = {Nature Biotechnology},
      volume = {26},
      number = {8},
      pages = {889--896}
    }
    
  • DOI BibTeX
    M. Kaiser
    Mean clustering coefficients: the role of isolated nodes and leafs on clustering measures for small-world networks
    in New Journal of Physics, 10(8):083042, August 2008
    @ARTICLE{Kaiser2008,
      title = {Mean clustering coefficients: the role of isolated nodes and leafs on clustering measures for small-world networks},
      author = {Kaiser, Marcus},
      year = 2008,
      doi = {10.1088/1367-2630/10/8/083042},
      month = aug,
      journal = {New Journal of Physics},
      volume = {10},
      number = {8},
      pages = {083042}
    }
    
  • DOI BibTeX
    F. Gibson, L. Anderson, G. Babnigg, M. Baker, M. Berth, P. Binz, A. Borthwick, P. Cash, B.W. Day, D.B. Friedman, D. Garland, H.B. Gutstein, C. Hoogland, N.A. Jones, A. Khan, J. Klose, A.I. Lamond, P.F. Lemkin, K.S. Lilley, J. Minden, N.J. Morris, N.W. Paton, M.R. Pisano, J.E. Prime, T. Rabilloud, D.A. Stead, C.F. Taylor, H. Voshol, A. Wipat, A.R. Jones
    Guidelines for reporting the use of gel electrophoresis in proteomics
    in Nature Biotechnology, 26(8):863-864, August 2008
    @ARTICLE{Gibson2008,
      title = {Guidelines for reporting the use of gel electrophoresis in proteomics},
      author = {Gibson, Frank and Anderson, Leigh and Babnigg, Gyorgy and Baker, Mark and Berth, Matthias and Binz, Pierre-Alain and Borthwick, Andy and Cash, Phil and Day, Billy W and Friedman, David B and Garland, Donita and Gutstein, Howard B and Hoogland, Christine and Jones, Neil A and Khan, Alamgir and Klose, Joachim and Lamond, Angus I and Lemkin, Peter F and Lilley, Kathryn S and Minden, Jonathan and Morris, Nicholas J and Paton, Norman W and Pisano, Michael R and Prime, John E and Rabilloud, Thierry and Stead, David A and Taylor, Chris F and Voshol, Hans and Wipat, Anil and Jones, Andrew R},
      year = 2008,
      doi = {10.1038/nbt0808-863},
      month = aug,
      journal = {Nature Biotechnology},
      volume = {26},
      number = {8},
      pages = {863--864}
    }
    
  • DOI BibTeX
    K.M. Edmond, M.A. Quigley, C. Zandoh, S. Danso, C. Hurt, S.O. Agyei, B.R. Kirkwood
    Aetiology of stillbirths and neonatal deaths in rural Ghana: implications for health programming in developing countries
    in Paediatric and Perinatal Epidemiology, 22(5):430-437, September 2008
    @ARTICLE{Edmond2008,
      title = {Aetiology of stillbirths and neonatal deaths in rural Ghana: implications for health programming in developing countries},
      author = {Edmond, Karen M. and Quigley, Maria A. and Zandoh, Charles and Danso, Samuel and Hurt, Chris and Agyei, Seth Owusu and Kirkwood, Betty R.},
      year = 2008,
      doi = {10.1111/j.1365-3016.2008.00961.x},
      month = sep,
      journal = {Paediatric and Perinatal Epidemiology},
      volume = {22},
      number = {5},
      pages = {430--437}
    }
    
  • DOI BibTeX
    K.M. Edmond, M.A. Quigley, C. Zandoh, S. Danso, C. Hurt, S.O. Agyei, B.R. Kirkwood
    Diagnostic accuracy of verbal autopsies in ascertaining the causes of stillbirths and neonatal deaths in rural Ghana
    in Paediatric and Perinatal Epidemiology, 22(5):417-429, September 2008
    @ARTICLE{Edmond2008a,
      title = {Diagnostic accuracy of verbal autopsies in ascertaining the causes of stillbirths and neonatal deaths in rural Ghana},
      author = {Edmond, Karen M. and Quigley, Maria A. and Zandoh, Charles and Danso, Samuel and Hurt, Chris and Agyei, Seth Owusu and Kirkwood, Betty R.},
      year = 2008,
      doi = {10.1111/j.1365-3016.2008.00962.x},
      month = sep,
      journal = {Paediatric and Perinatal Epidemiology},
      volume = {22},
      number = {5},
      pages = {417--429}
    }
    
  • DOI BibTeX
    A.A. Shah, D. Barthel, G. Folino, N. Krasnogor
    Performance Evaluation of Protein Structure Comparison Algorithms Under Integrated Resource Management Environment for MPI Jobs
    in 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications, p.817-822, Sydney, Australia, December 2008
    @INPROCEEDINGS{Shah2008,
      title = {Performance Evaluation of Protein Structure Comparison Algorithms Under Integrated Resource Management Environment for MPI Jobs},
      author = {Shah, Azhar A. and Barthel, Daniel and Folino, Gianluigi and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1109/ISPA.2008.41},
      month = dec,
      booktitle = {2008 IEEE International Symposium on Parallel and Distributed Processing with Applications},
      pages = {817--822},
      address = {Sydney, Australia}
    }
    
  • DOI BibTeX
    A.K. Roopun
    Temporal interactions between cortical rhythms
    in frontiers in Neuroscience, 2(2):145-154, December 2008
    @ARTICLE{Roopun2008a,
      title = {Temporal interactions between cortical rhythms},
      author = {Roopun, Anita K},
      year = 2008,
      doi = {10.3389/neuro.01.034.2008},
      month = dec,
      journal = {frontiers in Neuroscience},
      volume = {2},
      number = {2},
      pages = {145--154}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System
    in Learning Classifier Systems, Lecture Notes in Computer Science 4998, p.255-268, 2008
    @INCOLLECTION{Bacardit2008b,
      title = {Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4_15},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science},
      pages = {255--268}
    }
    
  • DOI BibTeX
    J. Bacardit, N. Krasnogor
    Fast rule representation for continuous attributes in genetics-based machine learning
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.1421, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Bacardit2008,
      title = {Fast rule representation for continuous attributes in genetics-based machine learning},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1145/1389095.1389369},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {1421},
      address = {Atlanta, GA, USA}
    }
    
  • DOI eprint BibTeX
    F.J. Romero-Campero, H. Cao, M. Camara, N. Krasnogor
    Structure and parameter estimation for cell systems biology models
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.331, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Romero-Campero2008,
      title = {Structure and parameter estimation for cell systems biology models},
      author = {Romero-Campero, Francisco J. and Cao, Hongqing and Camara, Miguel and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1145/1389095.1389153},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {331},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    J. Smaldon, J. Blakes, N. Krasnogor, D. Lancet
    A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.249, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Smaldon2008,
      title = {A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics},
      author = {Smaldon, James and Blakes, Jonathan and Krasnogor, Natalio and Lancet, Doron},
      year = 2008,
      doi = {10.1145/1389095.1389134},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {249},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    A.K. Roopun
    concatenation underlies interactions between gamma and beta rhythms in neocortex
    in Frontiers in Cellular Neuroscience, 2, 2008
    @ARTICLE{Roopun2008,
      title = {concatenation underlies interactions between gamma and beta rhythms in neocortex},
      author = {Roopun, Anita K.},
      year = 2008,
      doi = {10.3389/neuro.03.001.2008},
      journal = {Frontiers in Cellular Neuroscience},
      volume = {2}
    
  • DOI BibTeX
    M. Tabacman, N. Krasnogor, J. Bacardit, I. Loiseau
    Learning classifier systems for optimisation problems
    in Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation - GECCO '08, p.2039, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Tabacman2008,
      title = {Learning classifier systems for optimisation problems},
      author = {Tabacman, Maximiliano and Krasnogor, Natalio and Bacardit, Jaume and Loiseau, Irene},
      year = 2008,
      doi = {10.1145/1388969.1389018},
      booktitle = {Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation - GECCO '08},
      pages = {2039},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    J. Bacardit, E. Bernadó-Mansilla, M.V. Butz
    Learning Classifier Systems: Looking Back and Glimpsing Ahead
    in Learning Classifier Systems, Lecture Notes in Computer Science 4998, p.1-21, 2008
    @INCOLLECTION{Bacardit2008d,
      title = {Learning Classifier Systems: Looking Back and Glimpsing Ahead},
      author = {Bacardit, Jaume and Bernadó-Mansilla, Ester and Butz, Martin V.},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4_1},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science},
      pages = {1--21}
    }
    
  • DOI BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, N. Krasnogor
    Data Mining in Proteomics with Learning Classifier Systems
    in Learning Classifier Systems in Data Mining, Studies in Computational Intelligence 125, p.17-46, 2008
    @INCOLLECTION{Bacardit2008a,
      title = {Data Mining in Proteomics with Learning Classifier Systems},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D. and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1007/978-3-540-78979-6_2},
      booktitle = {Learning Classifier Systems in Data Mining},
      publisher = {Springer Berlin Heidelberg},
      volume = {125},
      series = {Studies in Computational Intelligence},
      pages = {17--46}
    }
    
  • DOI BibTeX
    C. Lambert, L. Hobley, C. Chang, A. Fenton, M. Capeness, L. Sockett
    A Predatory Patchwork: Membrane and Surface Structures of Bdellovibrio bacteriovorus
    in Advances in Microbial Physiology, 54, p.313-361, 2008
    @INCOLLECTION{Lambert2008,
      title = {A Predatory Patchwork: Membrane and Surface Structures of Bdellovibrio bacteriovorus},
      author = {Lambert, Carey and Hobley, Laura and Chang, Chien-Yi and Fenton, Andrew and Capeness, Michael and Sockett, Liz},
      year = 2008,
      doi = {10.1016/S0065-2911(08)00005-2},
      booktitle = {Advances in Microbial Physiology},
      pages = {313--361}
    }
    
  • DOI BibTeX
    N. Krasnogor, G. Nicosia, M. Pavone, D. Pelta
    Nature Inspired Cooperative Strategies for Optimization (NICSO 2007)
    Studies in Computational Intelligence 129, Springer Berlin Heidelberg, 2008
    @BOOK{Krasnogor2008a,
      title = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2007)},
      author = {Krasnogor, Natalio and Nicosia, Giuseppe and Pavone, Mario and Pelta, David},
      year = 2008,
      doi = {10.1007/978-3-540-78987-1},
      publisher = {Springer Berlin Heidelberg},
      volume = {129},
      series = {Studies in Computational Intelligence}
    }
    
  • DOI BibTeX
    C.C. Hilgetag, M. Kaiser
    Organization and Function of Complex Cortical Networks
    in Lectures in Supercomputational Neurosciences, p.107-133, 2008
    @INCOLLECTION{Hilgetag2008,
      title = {Organization and Function of Complex Cortical Networks},
      author = {Hilgetag, Claus C. and Kaiser, Marcus},
      year = 2008,
      doi = {10.1007/978-3-540-73159-7_4},
      booktitle = {Lectures in Supercomputational Neurosciences},
      publisher = {Springer Berlin Heidelberg},
      pages = {107--133}
    }
    
  • DOI BibTeX
    J. Bacardit, E. Bernadó-Mansilla, M.V. Butz, T. Kovacs, X. Llorà, K. Takadama
    Learning Classifier Systems
    Lecture Notes in Computer Science 4998, Springer Berlin Heidelberg, 2008
    @BOOK{Bacardit2008c,
      title = {Learning Classifier Systems},
      author = {Bacardit, Jaume and Bernadó-Mansilla, Ester and Butz, Martin V. and Kovacs, Tim and Llorà, Xavier and Takadama, Keiki},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science}
    }
    

2007

  • DOI BibTeX
    L.J. Steggles, R. Banks, O. Shaw, A. Wipat
    Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach
    in Bioinformatics, 23(3):336-343, February 2007
    @ARTICLE{Steggles2007,
      title = {Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach},
      author = {Steggles, L. J. and Banks, R. and Shaw, O. and Wipat, A.},
      year = 2007,
      doi = {10.1093/bioinformatics/btl596},
      month = feb,
      journal = {Bioinformatics},
      volume = {23},
      number = {3},
      pages = {336--343}
    }
    
  • DOI BibTeX
    Y. Ong, N. Krasnogor, H. Ishibuchi
    Special Issue on Memetic Algorithms
    in IEEE Transactions on Systems, Man and Cybernetics, Part B (Cybernetics), 37(1):2-5, February 2007
    @ARTICLE{Ong2007,
      title = {Special Issue on Memetic Algorithms},
      author = {Ong, Yew-Soon and Krasnogor, Natalio and Ishibuchi, Hisao},
      year = 2007,
      doi = {10.1109/TSMCB.2006.883274},
      month = feb,
      journal = {IEEE Transactions on Systems, Man and Cybernetics, Part B (Cybernetics)},
      volume = {37},
      number = {1},
      pages = {2--5}
    }
    
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor
    Quorum sensing P systems
    in Theoretical Computer Science, 371(1-2):20-33, February 2007
    @ARTICLE{Bernardini2007,
      title = {Quorum sensing P systems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1016/j.tcs.2006.10.012},
      month = feb,
      journal = {Theoretical Computer Science},
      volume = {371},
      number = {1-2},
      pages = {20--33}
    }
    
  • DOI BibTeX
    P. Andras, T. Wennekers
    Cortical activity pattern computation
    in Biosystems, 87(2-3):179-185, February 2007
    @ARTICLE{Andras2007a,
      title = {Cortical activity pattern computation},
      author = {Andras, Peter and Wennekers, Thomas},
      year = 2007,
      doi = {10.1016/j.biosystems.2006.09.012},
      month = feb,
      journal = {Biosystems},
      volume = {87},
      number = {2-3},
      pages = {179--185}
    }
    
  • DOI BibTeX
    P. Zuliani
    Quantum Programming With Mixed States
    in Electronic Notes in Theoretical Computer Science, 170(C):185-199, March 2007
    @ARTICLE{Zuliani2007a,
      title = {Quantum Programming With Mixed States},
      author = {Zuliani, Paolo},
      year = 2007,
      doi = {10.1016/j.entcs.2006.12.017},
      month = mar,
      journal = {Electronic Notes in Theoretical Computer Science},
      volume = {170},
      number = {C},
      pages = {185--199}
    }
    
  • DOI BibTeX
    M. Kaiser, M. Görner, C.C. Hilgetag
    Criticality of spreading dynamics in hierarchical cluster networks without inhibition
    in New Journal of Physics, 9(5):110-110, May 2007
    @ARTICLE{Kaiser2007a,
      title = {Criticality of spreading dynamics in hierarchical cluster networks without inhibition},
      author = {Kaiser, M and Görner, M and Hilgetag, C C},
      year = 2007,
      doi = {10.1088/1367-2630/9/5/110},
      month = may,
      journal = {New Journal of Physics},
      volume = {9},
      number = {5},
      pages = {110--110}
    }
    
  • DOI BibTeX
    T. Wennekers, N. Ay, P. Andras
    High-resolution multiple-unit EEG in cat auditory cortex reveals large spatio-temporal stochastic interactions
    in Biosystems, 89(1-3):190-197, May 2007
    @ARTICLE{Wennekers2007,
      title = {High-resolution multiple-unit EEG in cat auditory cortex reveals large spatio-temporal stochastic interactions},
      author = {Wennekers, Thomas and Ay, Nihat and Andras, Peter},
      year = 2007,
      doi = {10.1016/j.biosystems.2006.04.017},
      month = may,
      journal = {Biosystems},
      volume = {89},
      number = {1-3},
      pages = {190--197}
    }
    
  • DOI BibTeX
    M. Kaiser, R. Martin, P. Andras, M.P. Young
    Simulation of robustness against lesions of cortical networks
    in European Journal of Neuroscience, 25(10):3185-3192, June 2007
    @ARTICLE{Kaiser2007c,
      title = {Simulation of robustness against lesions of cortical networks},
      author = {Kaiser, Marcus and Martin, Robert and Andras, Peter and Young, Malcolm P.},
      year = 2007,
      doi = {10.1111/j.1460-9568.2007.05574.x},
      month = jun,
      journal = {European Journal of Neuroscience},
      volume = {25},
      number = {10},
      pages = {3185--3192}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag
    Development of multi-cluster cortical networks by time windows for spatial growth
    in Neurocomputing, 70(10-12):1829-1832, June 2007
    @ARTICLE{Kaiser2007b,
      title = {Development of multi-cluster cortical networks by time windows for spatial growth},
      author = {Kaiser, Marcus and Hilgetag, Claus C.},
      year = 2007,
      doi = {10.1016/j.neucom.2006.10.060},
      month = jun,
      journal = {Neurocomputing},
      volume = {70},
      number = {10-12},
      pages = {1829--1832}
    }
    
  • DOI BibTeX
    Y. Sun, A. Wipat, M. Pocock, P.A. Lee, K. Flanagan, J.T. Worthington
    Exploring Microbial Genome Sequences to Identify Protein Families on the Grid
    in IEEE Transactions on Information Technology in Biomedicine, 11(4):435-442, July 2007
    @ARTICLE{Sun2007,
      title = {Exploring Microbial Genome Sequences to Identify Protein Families on the Grid},
      author = {Sun, Yudong and Wipat, Anil and Pocock, Matthew and Lee, Peter A. and Flanagan, Keith and Worthington, James T.},
      year = 2007,
      doi = {10.1109/TITB.2007.892913},
      month = jul,
      journal = {IEEE Transactions on Information Technology in Biomedicine},
      volume = {11},
      number = {4},
      pages = {435--442}
    }
    
  • DOI BibTeX
    F. Nisbach, M. Kaiser
    Developmental time windows for spatial growth generate multiple-cluster small-world networks
    in The European Physical Journal B, 58(2):185-191, July 2007
    @ARTICLE{Nisbach2007,
      title = {Developmental time windows for spatial growth generate multiple-cluster small-world networks},
      author = {Nisbach, F. and Kaiser, M.},
      year = 2007,
      doi = {10.1140/epjb/e2007-00214-4},
      month = jul,
      journal = {The European Physical Journal B},
      volume = {58},
      number = {2},
      pages = {185--191}
    }
    
  • DOI eprint BibTeX
    P. Siepmann, C.P. Martin, I. Vancea, P.J. Moriarty, N. Krasnogor
    A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems
    in Nano Letters, 7(7):1985-1990, July 2007
    @ARTICLE{Siepmann2007,
      title = {A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems},
      author = {Siepmann, Peter and Martin, Christopher P. and Vancea, Ioan and Moriarty, Philip J. and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1021/nl070773m},
      month = jul,
      journal = {Nano Letters},
      volume = {7},
      number = {7},
      pages = {1985--1990}
    }
    
  • DOI BibTeX
    P. Andras, S. Lycett
    An advantage of chaotic neural dynamics
    in 2007 International Joint Conference on Neural Networks, p.1417-1422, Orlando, FL, USA, August 2007
    @INPROCEEDINGS{Andras2007,
      title = {An advantage of chaotic neural dynamics},
      author = {Andras, Peter and Lycett, Samantha},
      year = 2007,
      doi = {10.1109/IJCNN.2007.4371166},
      month = aug,
      booktitle = {2007 International Joint Conference on Neural Networks},
      pages = {1417--1422},
      address = {Orlando, FL, USA}
    }
    
  • DOI BibTeX
    G. Terrazas, M. Gheorghe, G. Kendall, N. Krasnogor
    Evolving tiles for automated self-assembly design
    in 2007 IEEE Congress on Evolutionary Computation, p.2001-2008, Singapore, September 2007
    @INPROCEEDINGS{Terrazas2007,
      title = {Evolving tiles for automated self-assembly design},
      author = {Terrazas, German and Gheorghe, Marian and Kendall, Graham and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1109/CEC.2007.4424719},
      month = sep,
      booktitle = {2007 IEEE Congress on Evolutionary Computation},
      pages = {2001--2008},
      address = {Singapore}
    }
    
  • DOI BibTeX
    S.E. Parkin, P. Andras, G. Morgan
    Evolutionary optimization of parameters for distributed virtual environments
    in 2007 IEEE Congress on Evolutionary Computation, p.1390-1397, Singapore, September 2007
    @INPROCEEDINGS{Parkin2007,
      title = {Evolutionary optimization of parameters for distributed virtual environments},
      author = {Parkin, Simon E. and Andras, Peter and Morgan, Graham},
      year = 2007,
      doi = {10.1109/CEC.2007.4424633},
      month = sep,
      booktitle = {2007 IEEE Congress on Evolutionary Computation},
      pages = {1390--1397},
      address = {Singapore}
    }
    
  • DOI eprint BibTeX
    Q.H. Nguyen, Y.S. Ong, N. Krasnogor
    A study on the design issues of Memetic Algorithm
    in 2007 IEEE Congress on Evolutionary Computation, p.2390-2397, Singapore, September 2007
    @INPROCEEDINGS{Nguyen2007,
      title = {A study on the design issues of Memetic Algorithm},
      author = {Nguyen, Q. H. and Ong, Y. S. and Krasnogor, N.},
      year = 2007,
      doi = {10.1109/CEC.2007.4424770},
      month = sep,
      booktitle = {2007 IEEE Congress on Evolutionary Computation},
      pages = {2390--2397},
      address = {Singapore}
    }
    
  • DOI BibTeX
    H. Fellermann, S. Rasmussen, H. Ziock, R.V. Sol?
    Life Cycle of a Minimal Protocell?A Dissipative Particle Dynamics Study
    in Artificial Life, 13(4):319-345, October 2007
    @ARTICLE{Fellermann2007,
      title = {Life Cycle of a Minimal Protocell?A Dissipative Particle Dynamics Study},
      author = {Fellermann, Harold and Rasmussen, Steen and Ziock, Hans-Joachim and Sol?, Ricard V.},
      year = 2007,
      doi = {10.1162/artl.2007.13.4.319},
      month = oct,
      journal = {Artificial Life},
      volume = {13},
      number = {4},
      pages = {319--345}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    Evaluating universities using simple scientometric research-output metrics: total citation counts per university for a retrospective seven-year rolling sample
    in Science and Public Policy, 34(8):555-563, October 2007
    @ARTICLE{Charlton2007a,
      title = {Evaluating universities using simple scientometric research-output metrics: total citation counts per university for a retrospective seven-year rolling sample},
      author = {Charlton, Bruce G and Andras, Peter},
      year = 2007,
      doi = {10.3152/030234207X254413},
      month = oct,
      journal = {Science and Public Policy},
      volume = {34},
      number = {8},
      pages = {555--563}
    }
    
  • DOI BibTeX
    H. Fellermann, R.V. Sole
    Minimal model of self-replicating nanocells: a physically embodied information-free scenario
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486):1803-1811, October 2007
    @ARTICLE{Fellermann2007a,
      title = {Minimal model of self-replicating nanocells: a physically embodied information-free scenario},
      author = {Fellermann, H. and Sole, R. V},
      year = 2007,
      doi = {10.1098/rstb.2007.2072},
      month = oct,
      journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
      volume = {362},
      number = {1486},
      pages = {1803--1811}
    }
    
  • DOI BibTeX
    P. Andras, R. Gwyther, A.A. Madalinski, S.J. Lynden, A. Andras, M.P. Young
    Ecological network analysis: an application to the evaluation of effects of pesticide use in an agricultural environment
    in Pest Management Science, 63(10):943-953, October 2007
    @ARTICLE{Andras2007b,
      title = {Ecological network analysis: an application to the evaluation of effects of pesticide use in an agricultural environment},
      author = {Andras, Peter and Gwyther, Robert and Madalinski, Agnes A and Lynden, Steven J and Andras, Alina and Young, Malcolm P},
      year = 2007,
      doi = {10.1002/ps.1347},
      month = oct,
      journal = {Pest Management Science},
      volume = {63},
      number = {10},
      pages = {943--953}
    }
    
  • DOI BibTeX
    M. Kaiser
    Brain architecture: a design for natural computation
    in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 365(1861):3033-3045, December 2007
    @ARTICLE{Kaiser2007,
      title = {Brain architecture: a design for natural computation},
      author = {Kaiser, M.},
      year = 2007,
      doi = {10.1098/rsta.2007.0007},
      month = dec,
      journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
      volume = {365},
      number = {1861},
      pages = {3033--3045}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, K. Sastry, X. Llorà, N. Krasnogor
    Automated alphabet reduction method with evolutionary algorithms for protein structure prediction
    in Proceedings of the 9th annual conference on Genetic and evolutionary computation - GECCO '07, p.346, London, England, 2007
    @INPROCEEDINGS{Bacardit2007,
      title = {Automated alphabet reduction method with evolutionary algorithms for protein structure prediction},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D. and Sastry, Kumara and Llorà, Xavier and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1145/1276958.1277033},
      booktitle = {Proceedings of the 9th annual conference on Genetic and evolutionary computation  - GECCO '07},
      pages = {346},
      address = {London, England}
    }
    
  • DOI BibTeX
    P. Zuliani
    A Formal Derivation of Grover's Quantum Search Algorithm
    in First Joint IEEE/IFIP Symposium on Theoretical Aspects of Software Engineering (TASE '07), p.67-74, Shanghai, China, 2007
    @INPROCEEDINGS{Zuliani2007,
      title = {A Formal Derivation of Grover's Quantum Search Algorithm},
      author = {Zuliani, Paolo},
      year = 2007,
      doi = {10.1109/TASE.2007.3},
      booktitle = {First Joint IEEE/IFIP Symposium on Theoretical Aspects of Software Engineering (TASE '07)},
      pages = {67--74},
      address = {Shanghai, China}
    }
    
  • DOI BibTeX
    A.A. Shah, D. Barthel, N. Krasnogor
    Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview
    in Frontiers of High Performance Computing and Networking ISPA 2007 Workshops, Lecture Notes in Computer Science 4743, p.424-434, 2007
    @INCOLLECTION{Shah2007,
      title = {Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview},
      author = {Shah, Azhar Ali and Barthel, Daniel and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1007/978-3-540-74767-3_44},
      booktitle = {Frontiers of High Performance Computing and Networking ISPA 2007 Workshops},
      publisher = {Springer Berlin Heidelberg},
      volume = {4743},
      series = {Lecture Notes in Computer Science},
      pages = {424--434}
    }
    
  • DOI BibTeX
    J. Bacardit, D.E. Goldberg, M.V. Butz
    Improving the Performance of a Pittsburgh Learning Classifier System Using a Default Rule
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.291-307, 2007
    @INCOLLECTION{Bacardit2007a,
      title = {Improving the Performance of a Pittsburgh Learning Classifier System Using a Default Rule},
      author = {Bacardit, Jaume and Goldberg, David E. and Butz, Martin V.},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_20},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {291--307}
    }
    
  • DOI BibTeX
    J. Bacardit, M.V. Butz
    Data Mining in Learning Classifier Systems: Comparing XCS with GAssist
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.282-290, 2007
    @INCOLLECTION{Bacardit2007b,
      title = {Data Mining in Learning Classifier Systems: Comparing XCS with GAssist},
      author = {Bacardit, Jaume and Butz, Martin V.},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_19},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {282--290}
    }
    
  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Bloat Control and Generalization Pressure Using the Minimum Description Length Principle for a Pittsburgh Approach Learning Classifier System
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.59-79, 2007
    @INCOLLECTION{Bacardit2007c,
      title = {Bloat Control and Generalization Pressure Using the Minimum Description Length Principle for a Pittsburgh Approach Learning Classifier System},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_5},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {59--79}
    }
    
  • DOI eprint BibTeX
    D. Barthel, J.D. Hirst, J. Błażewicz, E.K. Burke, N. Krasnogor
    ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information
    in BMC Bioinformatics, 8(1):416, 2007
    @ARTICLE{Barthel2007,
      title = {ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information},
      author = {Barthel, Daniel and Hirst, Jonathan D and Błażewicz, Jacek and Burke, Edmund K and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1186/1471-2105-8-416},
      journal = {BMC Bioinformatics},
      volume = {8},
      number = {1},
      pages = {416}
    }
    
  • DOI BibTeX
    D. Field, G. Garrity, T. Gray, J. Selengut, P. Sterk, N. Thomson, T. Tatusova, G. Cochrane, F.O. Glöckner, R. Kottmann, A.L. Lister, Y. Tateno, R. Vaughan
    eGenomics: Cataloguing Our Complete Genome Collection III
    in Comparative and Functional Genomics, 2007:1-7, 2007
    @ARTICLE{Field2007,
      title = {eGenomics: Cataloguing Our Complete Genome Collection III},
      author = {Field, Dawn and Garrity, George and Gray, Tanya and Selengut, Jeremy and Sterk, Peter and Thomson, Nick and Tatusova, Tatiana and Cochrane, Guy and Glöckner, Frank Oliver and Kottmann, Renzo and Lister, Allyson L. and Tateno, Yoshio and Vaughan, Robert},
      year = 2007,
      doi = {10.1155/2007/47304},
      journal = {Comparative and Functional Genomics},
      volume = {2007},
      pages = {1--7}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    Complex Biological Memory Conceptualized as an Abstract Communication System–Human Long Term Memories Grow in Complexity during Sleep and Undergo Selection while Awake
    in Neurodynamics of Cognition and Consciousness, p.325-339, 2007
    @INCOLLECTION{Charlton2007,
      title = {Complex Biological Memory Conceptualized as an Abstract Communication System–Human Long Term Memories Grow in Complexity during Sleep and Undergo Selection while Awake},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2007,
      doi = {10.1007/978-3-540-73267-9_15},
      booktitle = {Neurodynamics of Cognition and Consciousness},
      publisher = {Springer Berlin Heidelberg},
      pages = {325--339}
    }
    
  • DOI eprint BibTeX
    V. Cutello, N. Krasnogor, G. Nicosia, M. Pavone
    Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization
    in Adaptive and Natural Computing Algorithms, Lecture Notes in Computer Science 4431, p.93-101, 2007
    @INCOLLECTION{Cutello2007,
      title = {Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization},
      author = {Cutello, Vincenzo and Krasnogor, Natalio and Nicosia, Giuseppe and Pavone, Mario},
      year = 2007,
      doi = {10.1007/978-3-540-71618-1_11},
      booktitle = {Adaptive and Natural Computing Algorithms},
      publisher = {Springer Berlin Heidelberg},
      volume = {4431},
      series = {Lecture Notes in Computer Science},
      pages = {93--101}
    }
    
  • DOI BibTeX
    K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P.W. Lord, R.D. Stevens, C. Goble
    The myGrid ontology: bioinformatics service discovery
    in International Journal of Bioinformatics Research and Applications, 3(3):303, 2007
    @ARTICLE{Wolstencroft2007,
      title = {The myGrid ontology: bioinformatics service discovery},
      author = {Wolstencroft, K. and Alper, P. and Hull, D. and Wroe, C. and Lord, P. W. and Stevens, R. D. and Goble, C.a},
      year = 2007,
      doi = {10.1504/IJBRA.2007.015005},
      journal = {International Journal of Bioinformatics Research and Applications},
      volume = {3},
      number = {3},
      pages = {303}
    }
    
  • DOI BibTeX
    N. Miskov-Zivanov, P. Zuliani, E.M. Clarke, J.R. Faeder
    Studies of biological networks with statistical model checking
    in Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13, p.728-729, Wshington DC, USA, 2007
    @INPROCEEDINGS{Miskov-Zivanov2007,
      title = {Studies of biological networks with statistical model checking},
      author = {Miskov-Zivanov, Natasa and Zuliani, Paolo and Clarke, Edmund M. and Faeder, James R.},
      year = 2007,
      doi = {10.1145/2506583.2512390},
      booktitle = {Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13},
      pages = {728--729},
      address = {Wshington DC, USA}
    }
    
  • DOI BibTeX
    L.d.F. Costa, M. Kaiser, C.C. Hilgetag
    Predicting the connectivity of primate cortical networks from topological and spatial node properties
    in BMC Systems Biology, 1(1):16, 2007
    @ARTICLE{Costa2007,
      title = {Predicting the connectivity of primate cortical networks from topological and spatial node properties},
      author = {Costa, Luciano da F and Kaiser, Marcus and Hilgetag, Claus C},
      year = 2007,
      doi = {10.1186/1752-0509-1-16},
      journal = {BMC Systems Biology},
      volume = {1},
      number = {1},
      pages = {16}
    }
    

2006

  • DOI BibTeX
    B.G. Charlton, P. Andras
    Globalization in science education: An inevitable and beneficial trend
    in Medical Hypotheses, 66(5):869-873, January 2006
    @ARTICLE{Charlton2006,
      title = {Globalization in science education: An inevitable and beneficial trend},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2006,
      doi = {10.1016/j.mehy.2006.01.002},
      month = jan,
      journal = {Medical Hypotheses},
      volume = {66},
      number = {5},
      pages = {869--873}
    }
    
  • DOI BibTeX
    S. Atkinson, C.-. Chang, R.E. Sockett, M. Camara, P. Williams
    Quorum Sensing in Yersinia enterocolitica Controls Swimming and Swarming Motility
    in Journal of Bacteriology, 188(4):1451-1461, February 2006
    @ARTICLE{Atkinson2006,
      title = {Quorum Sensing in Yersinia enterocolitica Controls Swimming and Swarming Motility},
      author = {Atkinson, S. and Chang, C. -y. and Sockett, R. E. and Camara, M. and Williams, P.},
      year = 2006,
      doi = {10.1128/jb.188.4.1451-1461.2006},
      month = feb,
      journal = {Journal of Bacteriology},
      volume = {188},
      number = {4},
      pages = {1451--1461}
    }
    
  • DOI BibTeX
    B.G. Charlton
    How should we rate research?: Counting number of publications may be best research performance measure
    in BMJ, 332(7551):1214-1215, May 2006
    @ARTICLE{Charlton2006a,
      title = {How should we rate research?: Counting number of publications may be best research performance measure},
      author = {Charlton, B. G},
      year = 2006,
      doi = {10.1136/bmj.332.7551.1214-c},
      month = may,
      journal = {BMJ},
      volume = {332},
      number = {7551},
      pages = {1214--1215}
    }
    
  • DOI BibTeX
    E. Merelli, G. Armano, N. Cannata, F. Corradini, M. d'Inverno, A. Doms, P. Lord, A. Martin, L. Milanesi, S. Moller, M. Schroeder, M. Luck
    Agents in bioinformatics, computational and systems biology
    in Briefings in Bioinformatics, 8(1):45-59, May 2006
    @ARTICLE{Merelli2006,
      title = {Agents in bioinformatics, computational and systems biology},
      author = {Merelli, E. and Armano, G. and Cannata, N. and Corradini, F. and d'Inverno, M. and Doms, A. and Lord, P. and Martin, A. and Milanesi, L. and Moller, S. and Schroeder, M. and Luck, M.},
      year = 2006,
      doi = {10.1093/bib/bbl014},
      month = may,
      journal = {Briefings in Bioinformatics},
      volume = {8},
      number = {1},
      pages = {45--59}
    }
    
  • DOI BibTeX
    P. Andras
    Extraction of an activity pattern language from EEG data
    in Neurocomputing, 69(10-12):1313-1316, June 2006
    @ARTICLE{Andras2006,
      title = {Extraction of an activity pattern language from EEG data},
      author = {Andras, Peter},
      year = 2006,
      doi = {10.1016/j.neucom.2005.12.099},
      month = jun,
      journal = {Neurocomputing},
      volume = {69},
      number = {10-12},
      pages = {1313--1316}
    }
    
  • DOI BibTeX
    O. Shaw, J. Steggles, A. Wipat
    Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks
    in Electronic Notes in Theoretical Computer Science, 151(3):111-129, June 2006
    @ARTICLE{Shaw2006,
      title = {Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks},
      author = {Shaw, Oliver and Steggles, Jason and Wipat, Anil},
      year = 2006,
      doi = {10.1016/j.entcs.2006.03.015},
      month = jun,
      journal = {Electronic Notes in Theoretical Computer Science},
      volume = {151},
      number = {3},
      pages = {111--129}
    }
    
  • DOI BibTeX
    K. Wolstencroft, P. Lord, L. Tabernero, A. Brass, R. Stevens
    Protein classification using ontology classification
    in Bioinformatics, 22(14):e530-e538, July 2006
    @ARTICLE{Wolstencroft2006,
      title = {Protein classification using ontology classification},
      author = {Wolstencroft, K. and Lord, P. and Tabernero, L. and Brass, A. and Stevens, R.},
      year = 2006,
      doi = {10.1093/bioinformatics/btl208},
      month = jul,
      journal = {Bioinformatics},
      volume = {22},
      number = {14},
      pages = {e530--e538}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, J. Blazewicz, N. Krasnogor
    Prediction Of Residue Exposure And Contact Number For Simplified Hp Lattice Model Proteins Using Learning Classifier Systems
    in Applied Artificial Intelligence, p.601-608, Genova, Italy, July 2006
    @INPROCEEDINGS{Stout2006,
      title = {Prediction Of Residue Exposure And Contact Number For Simplified Hp Lattice Model Proteins Using Learning Classifier Systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Blazewicz, Jacek and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1142/9789812774118_0085},
      month = jul,
      booktitle = {Applied Artificial Intelligence},
      pages = {601--608},
      address = {Genova, Italy}
    }
    
  • DOI BibTeX
    T. Oinn, M. Greenwood, M. Addis, M.N. Alpdemir, J. Ferris, K. Glover, C. Goble, A. Goderis, D. Hull, D. Marvin, P. Li, P. Lord, M.R. Pocock, M. Senger, R. Stevens, A. Wipat, C. Wroe
    Taverna: lessons in creating a workflow environment for the life sciences
    in Concurrency and Computation: Practice and Experience, 18(10):1067-1100, August 2006
    @ARTICLE{Oinn2006,
      title = {Taverna: lessons in creating a workflow environment for the life sciences},
      author = {Oinn, Tom and Greenwood, Mark and Addis, Matthew and Alpdemir, M. Nedim and Ferris, Justin and Glover, Kevin and Goble, Carole and Goderis, Antoon and Hull, Duncan and Marvin, Darren and Li, Peter and Lord, Phillip and Pocock, Matthew R. and Senger, Martin and Stevens, Robert and Wipat, Anil and Wroe, Chris},
      year = 2006,
      doi = {10.1002/cpe.993},
      month = aug,
      journal = {Concurrency and Computation: Practice and Experience},
      volume = {18},
      number = {10},
      pages = {1067--1100}
    }
    
  • DOI BibTeX
    J. Hallinan, A. Wipat
    Clustering and Cross-talk in a Yeast Functional Interaction Network
    in 2006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, p.1-8, Toronto, ON, Canada, September 2006
    @INPROCEEDINGS{Hallinan2006,
      title = {Clustering and Cross-talk in a Yeast Functional Interaction Network},
      author = {Hallinan, Jennifer and Wipat, Anil},
      year = 2006,
      doi = {10.1109/CIBCB.2006.330983},
      month = sep,
      booktitle = {2006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology},
      pages = {1--8},
      address = {Toronto, ON, Canada}
    }
    
  • DOI BibTeX
    S.K. Bechhofer, R.D. Stevens, P.W. Lord
    GOHSE: Ontology driven linking of biology resources
    in Web Semantics: Science, Services and Agents on the World Wide Web, 4(3):155-163, September 2006
    @ARTICLE{Bechhofer2006,
      title = {GOHSE: Ontology driven linking of biology resources},
      author = {Bechhofer, S. K. and Stevens, R. D. and Lord, P. W.},
      year = 2006,
      doi = {10.1016/j.websem.2005.09.003},
      month = sep,
      journal = {Web Semantics: Science, Services and Agents on the World Wide Web},
      volume = {4},
      number = {3},
      pages = {155--163}
    }
    
  • DOI BibTeX
    L. Cronin, N. Krasnogor, B.G. Davis, C. Alexander, N. Robertson, J.H.G. Steinke, S.L.M. Schroeder, A.N. Khlobystov, G. Cooper, P.M. Gardner, P. Siepmann, B.J. Whitaker, D. Marsh
    The imitation game—a computational chemical approach to recognizing life
    in Nature Biotechnology, 24(10):1203-1206, October 2006
    @ARTICLE{Cronin2006,
      title = {The imitation game—a computational chemical approach to recognizing life},
      author = {Cronin, Leroy and Krasnogor, Natalio and Davis, Benjamin G and Alexander, Cameron and Robertson, Neil and Steinke, Joachim H G and Schroeder, Sven L M and Khlobystov, Andrei N and Cooper, Geoff and Gardner, Paul M and Siepmann, Peter and Whitaker, Benjamin J and Marsh, Dan},
      year = 2006,
      doi = {10.1038/nbt1006-1203},
      month = oct,
      journal = {Nature Biotechnology},
      volume = {24},
      number = {10},
      pages = {1203--1206}
    }
    
  • DOI BibTeX
    M. Lappe, S. Kuhlmann, B. Oerke, M. Kaiser
    The fate of object features during perisaccadic mislocalization
    in Journal of Vision, 6(11):11-11, November 2006
    @ARTICLE{Lappe2006,
      title = {The fate of object features during perisaccadic mislocalization},
      author = {Lappe, M. and Kuhlmann, S. and Oerke, B. and Kaiser, M.},
      year = 2006,
      doi = {10.1167/6.11.11},
      month = nov,
      journal = {Journal of Vision},
      volume = {6},
      number = {11},
      pages = {11--11}
    }
    
  • DOI BibTeX
    C. Lambert, K.A. Morehouse, C. Chang, R.E. Sockett
    Bdellovibrio: growth and development during the predatory cycle
    in Current Opinion in Microbiology, 9(6):639-644, December 2006
    @ARTICLE{Lambert2006,
      title = {Bdellovibrio: growth and development during the predatory cycle},
      author = {Lambert, Carey and Morehouse, Karen A and Chang, Chien-Yi and Sockett, R Elizabeth},
      year = 2006,
      doi = {10.1016/j.mib.2006.10.002},
      month = dec,
      journal = {Current Opinion in Microbiology},
      volume = {9},
      number = {6},
      pages = {639--644}
    }
    
  • DOI BibTeX
    L.J. Steggles, R. Banks, A. Wipat
    Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 4210, p.127-141, 2006
    @INCOLLECTION{Steggles2006,
      title = {Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets},
      author = {Steggles, L. J. and Banks, Richard and Wipat, Anil},
      year = 2006,
      doi = {10.1007/11885191_9},
      booktitle = {Computational Methods in Systems Biology},
      publisher = {Springer Berlin Heidelberg},
      volume = {4210},
      series = {Lecture Notes in Computer Science},
      pages = {127--141}
    }
    
  • S.O. Danso
    An Exploration of Classification prediction techniques in data mining: the insurance domain
    in Master Degree Thesis, Bournemouth University, available online since 2006
  • DOI BibTeX
    J. Bacardit, M. Stout, N. Krasnogor, J.D. Hirst, J. Blazewicz
    Coordination number prediction using learning classifier systems
    in Proceedings of the 8th annual conference on Genetic and evolutionary computation - GECCO '06, p.247, Seattle, Washington, USA, 2006
    @INPROCEEDINGS{Bacardit2006,
      title = {Coordination number prediction using learning classifier systems},
      author = {Bacardit, Jaume and Stout, Michael and Krasnogor, Natalio and Hirst, Jonathan D. and Blazewicz, Jacek},
      year = 2006,
      doi = {10.1145/1143997.1144041},
      booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation  - GECCO '06},
      pages = {247},
      address = {Seattle, Washington, USA}
    }
    
  • DOI BibTeX
    J. Hallinan, D. Bradley, J. Wiles
    Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks
    in 2006 IEEE International Conference on Evolutionary Computation, p.2355-2361, Vancouver, BC, Canada, 2006
    @INPROCEEDINGS{Hallinan2006a,
      title = {Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks},
      author = {Hallinan, J. and Bradley, D. and Wiles, J.},
      year = 2006,
      doi = {10.1109/CEC.2006.1688599},
      booktitle = {2006 IEEE International Conference on Evolutionary Computation},
      pages = {2355--2361},
      address = {Vancouver, BC, Canada}
    }
    
  • DOI BibTeX
    P. Andras
    The Language of Cortical Dynamics
    in Computational Life Sciences II, Lecture Notes in Computer Science 4216, p.247-256, 2006
    @INCOLLECTION{Andras2006a,
      title = {The Language of Cortical Dynamics},
      author = {Andras, Peter},
      year = 2006,
      doi = {10.1007/11875741_24},
      booktitle = {Computational Life Sciences II},
      publisher = {Springer Berlin Heidelberg},
      volume = {4216},
      series = {Lecture Notes in Computer Science},
      pages = {247--256}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, N. Krasnogor, J. Blazewicz
    From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems
    in Applications of Evolutionary Computing, Lecture Notes in Computer Science 3907, p.208-220, 2006
    @INCOLLECTION{Stout2006a,
      title = {From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Krasnogor, Natalio and Blazewicz, Jacek},
      year = 2006,
      doi = {10.1007/11732242_19},
      booktitle = {Applications of Evolutionary Computing},
      publisher = {Springer Berlin Heidelberg},
      volume = {3907},
      series = {Lecture Notes in Computer Science},
      pages = {208--220}
    }
    
  • DOI BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, R.C. Muniyandi, M.J. Pérez-Jímenez, F.J. Romero-Campero
    On P Systems as a Modelling Tool for Biological Systems
    in Membrane Computing, Lecture Notes in Computer Science 3850, p.114-133, 2006
    @INCOLLECTION{Bernardini2006,
      title = {On P Systems as a Modelling Tool for Biological Systems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Muniyandi, Ravie C. and Pérez-Jímenez, Mario J. and Romero-Campero, Francisco José},
      year = 2006,
      doi = {10.1007/11603047_8},
      booktitle = {Membrane Computing},
      publisher = {Springer Berlin Heidelberg},
      volume = {3850},
      series = {Lecture Notes in Computer Science},
      pages = {114--133}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag
    Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems
    in PLoS Computational Biology, 2(7):e95, 2006
    @ARTICLE{Kaiser2006,
      title = {Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems},
      author = {Kaiser, Marcus and Hilgetag, Claus C.},
      year = 2006,
      doi = {10.1371/journal.pcbi.0020095},
      journal = {PLoS Computational Biology},
      volume = {2},
      number = {7},
      pages = {e95}
    }
    
  • DOI BibTeX
    G. Ochoa, G. Escuela, N. Krasnogor
    Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.247-258, 2006
    @INCOLLECTION{Ochoa2006,
      title = {Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding},
      author = {Ochoa, Gabriela and Escuela, Gabi and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1007/11740698_22},
      booktitle = {Artificial Evolution},
      publisher = {Springer Berlin Heidelberg},
      volume = {3871},
      series = {Lecture Notes in Computer Science},
      pages = {247--258}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, G. Terrazas, D.A. Pelta, G. Ochoa
    A Critical View of the Evolutionary Design of Self-assembling Systems
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.179-188, 2006
    @INCOLLECTION{Krasnogor2006,
      title = {A Critical View of the Evolutionary Design of Self-assembling Systems},
      author = {Krasnogor, Natalio and Terrazas, Graciela and Pelta, David A. and Ochoa, Gabriela},
      year = 2006,
      doi = {10.1007/11740698_16},
      booktitle = {Artificial Evolution},
      publisher = {Springer Berlin Heidelberg},
      volume = {3871},
      series = {Lecture Notes in Computer Science},
      pages = {179--188}
    }
    
  • DOI BibTeX
    L. Bianco, D. Pescini, P. Siepmann, N. Krasnogor, F.J. Romero-Campero, M. Gheorghe
    Towards a P Systems Pseudomonas Quorum Sensing Model
    in Membrane Computing, Lecture Notes in Computer Science 4361, p.197-214, 2006
    @INCOLLECTION{Bianco2006,
      title = {Towards a P Systems Pseudomonas Quorum Sensing Model},
      author = {Bianco, Luca and Pescini, Dario and Siepmann, Peter and Krasnogor, Natalio and Romero-Campero, Francisco J. and Gheorghe, Marian},
      year = 2006,
      doi = {10.1007/11963516_13},
      booktitle = {Membrane Computing},
      publisher = {Springer Berlin Heidelberg},
      volume = {4361},
      series = {Lecture Notes in Computer Science},
      pages = {197--214}
    }
    
  • DOI BibTeX
    J. Bacardit, N. Krasnogor
    Smart crossover operator with multiple parents for a Pittsburgh learning classifier system
    in Proceedings of the 8th annual conference on Genetic and evolutionary computation - GECCO '06, p.1441, Seattle, Washington, USA, 2006
    @INPROCEEDINGS{Bacardit2006a,
      title = {Smart crossover operator with multiple parents for a Pittsburgh learning classifier system},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1145/1143997.1144235},
      booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation  - GECCO '06},
      pages = {1441},
      address = {Seattle, Washington, USA}
    }
    

2005

  • DOI BibTeX
    G. Succi, W. Pedrycz, S. Djokic, P. Zuliani, B. Russo
    An Empirical Exploration of the Distributions of the Chidamber and Kemerer Object-Oriented Metrics Suite
    in Empirical Software Engineering, 10(1):81-104, January 2005
    @ARTICLE{Succi2005,
      title = {An Empirical Exploration of the Distributions of the Chidamber and Kemerer Object-Oriented Metrics Suite},
      author = {Succi, Giancarlo and Pedrycz, Witold and Djokic, Snezana and Zuliani, Paolo and Russo, Barbara},
      year = 2005,
      doi = {10.1023/B:EMSE.0000048324.12188.a2},
      month = jan,
      journal = {Empirical Software Engineering},
      volume = {10},
      number = {1},
      pages = {81--104}
    }
    
  • DOI BibTeX
    P. Andras, C. Andras
    The origins of life – the ‘protein interaction world’ hypothesis: protein interactions were the first form of self-reproducing life and nucleic acids evolved later as memory molecules
    in Medical Hypotheses, 64(4):678-688, January 2005
    @ARTICLE{Andras2005c,
      title = {The origins of life – the ‘protein interaction world’ hypothesis: protein interactions were the first form of self-reproducing life and nucleic acids evolved later as memory molecules},
      author = {Andras, Peter and Andras, Csaba},
      year = 2005,
      doi = {10.1016/j.mehy.2004.11.029},
      month = jan,
      journal = {Medical Hypotheses},
      volume = {64},
      number = {4},
      pages = {678--688}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    Medical research funding may have over-expanded and be due for collapse
    in QJM, 98(1):53-55, January 2005
    @ARTICLE{Charlton2005,
      title = {Medical research funding may have over-expanded and be due for collapse},
      author = {Charlton, B. G. and Andras, P.},
      year = 2005,
      doi = {10.1093/qjmed/hci003},
      month = jan,
      journal = {QJM},
      volume = {98},
      number = {1},
      pages = {53--55}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    Modernizing UK health services: 'short-sharp-shock' reform, the NHS subsistence economy, and the spectre of health care famine
    in Journal of Evaluation in Clinical Practice, 11(2):111-119, April 2005
    @ARTICLE{Charlton2005a,
      title = {Modernizing UK health services: 'short-sharp-shock' reform, the NHS subsistence economy, and the spectre of health care famine},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2005,
      doi = {10.1111/j.1365-2753.2005.00515.x},
      month = apr,
      journal = {Journal of Evaluation in Clinical Practice},
      volume = {11},
      number = {2},
      pages = {111--119}
    }
    
  • DOI BibTeX
    D. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, E. Burke
    A fuzzy sets based generalization of contact maps for the overlap of protein structures
    in Fuzzy Sets and Systems, 152(1):103-123, May 2005
    @ARTICLE{Pelta2005,
      title = {A fuzzy sets based generalization of contact maps for the overlap of protein structures},
      author = {Pelta, David and Krasnogor, Natalio and Bousono-Calzon, Carlos and Verdegay, José L. and Hirst, J. and Burke, Edmund},
      year = 2005,
      doi = {10.1016/j.fss.2004.10.017},
      month = may,
      journal = {Fuzzy Sets and Systems},
      volume = {152},
      number = {1},
      pages = {103--123}
    }
    
  • DOI BibTeX
    P. Andras
    Neural activity pattern systems
    in Neurocomputing, 65-66(C):531-536, June 2005
    @ARTICLE{Andras2005,
      title = {Neural activity pattern systems},
      author = {Andras, Peter},
      year = 2005,
      doi = {10.1016/j.neucom.2004.10.041},
      month = jun,
      journal = {Neurocomputing},
      volume = {65-66},
      number = {C},
      pages = {531--536}
    }
    
  • DOI BibTeX
    P. Andras
    Pattern computation in neural communication systems
    in Biological Cybernetics, 92(6):452-460, June 2005
    @ARTICLE{Andras2005a,
      title = {Pattern computation in neural communication systems},
      author = {Andras, Peter},
      year = 2005,
      doi = {10.1007/s00422-005-0572-0},
      month = jun,
      journal = {Biological Cybernetics},
      volume = {92},
      number = {6},
      pages = {452--460}
    }
    
  • DOI BibTeX
    P. Zuliani
    Compiling quantum programs
    in Acta Informatica, 41(7-8):435-474, June 2005
    @ARTICLE{Zuliani2005,
      title = {Compiling quantum programs},
      author = {Zuliani, Paolo},
      year = 2005,
      doi = {10.1007/s00236-005-0165-3},
      month = jun,
      journal = {Acta Informatica},
      volume = {41},
      number = {7-8},
      pages = {435--474}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    Universities and social progress in modernising societies: how educational expansion has replaced socialism as an instrument of political reform
    in Critical Quarterly, 47(1-2):30-39, July 2005
    @ARTICLE{Charlton2005c,
      title = {Universities and social progress in modernising societies: how educational expansion has replaced socialism as an instrument of political reform},
      author = {Charlton, Bruce G. and Andras, Peter},
      year = 2005,
      doi = {10.1111/j.0011-1562.2005.00612.x},
      month = jul,
      journal = {Critical Quarterly},
      volume = {47},
      number = {1-2},
      pages = {30--39}
    }
    
  • DOI BibTeX
    B.G. Charlton, P. Andras
    The Need for a New Specialist Professional Research System of “Pure” Medical Science
    in PLoS Medicine, 2(8):e285, August 2005
    @ARTICLE{Charlton2005b,
      title = {The Need for a New Specialist Professional Research System of “Pure” Medical Science},
      author = {Charlton, Bruce G and Andras, Peter},
      year = 2005,
      doi = {10.1371/journal.pmed.0020285},
      month = aug,
      journal = {PLoS Medicine},
      volume = {2},
      number = {8},
      pages = {e285}
    }
    
  • eprint BibTeX
    D. Pelta, J. Gonzales, N. Krasnogor
    Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric
    in Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications, p.1124-1129, Barcelona, Spain, September 2005
    @INPROCEEDINGS{Pelta2005a,
      title = {Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric},
      author = {Pelta, D.A. and Gonzales, J.R. and Krasnogor, N.},
      year = 2005,
      month = sep,
      booktitle = {Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications},
      pages = {1124--1129},
      address = {Barcelona, Spain}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, J. Smith
    A Tutorial for Competent Memetic Algorithms: Model, Taxonomy, and Design Issues
    in IEEE Transactions on Evolutionary Computation, 9(5):474-488, October 2005
    @ARTICLE{Krasnogor2005,
      title = {A Tutorial for Competent Memetic Algorithms: Model, Taxonomy, and Design Issues},
      author = {Krasnogor, N. and Smith, J.},
      year = 2005,
      doi = {10.1109/TEVC.2005.850260},
      month = oct,
      journal = {IEEE Transactions on Evolutionary Computation},
      volume = {9},
      number = {5},
      pages = {474--488}
    }
    
  • DOI BibTeX
    J. Bacardit
    Analysis of the initialization stage of a Pittsburgh approach learning classifier system
    in Proceedings of the 2005 conference on Genetic and evolutionary computation - GECCO '05, p.1843, Washington DC, USA, 2005
    @INPROCEEDINGS{Bacardit2005,
      title = {Analysis of the initialization stage of a Pittsburgh approach learning classifier system},
      author = {Bacardit, Jaume},
      year = 2005,
      doi = {10.1145/1068009.1068321},
      booktitle = {Proceedings of the 2005 conference on Genetic and evolutionary computation  - GECCO '05},
      pages = {1843},
      address = {Washington DC, USA}
    }
    
  • DOI BibTeX
    S. Gustafson, E.K. Burke, N. Krasnogor
    On Improving Genetic Programming for Symbolic Regression
    in 2005 IEEE Congress on Evolutionary Computation, p.912-919, Edinburgh, Scotland, UK, 2005
    @INPROCEEDINGS{Gustafson2005a,
      title = {On Improving Genetic Programming for Symbolic Regression},
      author = {Gustafson, S. and Burke, E. K. and Krasnogor, N.},
      year = 2005,
      doi = {10.1109/CEC.2005.1554780},
      booktitle = {2005 IEEE Congress on Evolutionary Computation},
      pages = {912--919},
      address = {Edinburgh, Scotland, UK}
    }
    
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, J. Giavitto
    On Self-assembly in Population P Systems
    in Unconventional Computation, Lecture Notes in Computer Science 3699, p.46-57, 2005
    @INCOLLECTION{Bernardini2005b,
      title = {On Self-assembly in Population P Systems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Giavitto, Jean-Louis},
      year = 2005,
      doi = {10.1007/11560319_6},
      booktitle = {Unconventional Computation},
      publisher = {Springer Berlin Heidelberg},
      volume = {3699},
      series = {Lecture Notes in Computer Science},
      pages = {46--57}
    }
    
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, G. Terrazas
    Membrane Computing — Current Results and Future Problems
    in New Computational Paradigms, Lecture Notes in Computer Science 3526, p.49-53, 2005
    @INCOLLECTION{Bernardini2005a,
      title = {Membrane Computing — Current Results and Future Problems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Terrazas, German},
      year = 2005,
      doi = {10.1007/11494645_6},
      booktitle = {New Computational Paradigms},
      publisher = {Springer Berlin Heidelberg},
      volume = {3526},
      series = {Lecture Notes in Computer Science},
      pages = {49--53}
    }
    
  • DOI BibTeX
    P. Lord, P. Alper, C. Wroe, C. Goble
    Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery
    in The Semantic Web: Research and Applications, Lecture Notes in Computer Science 3532, p.17-31, 2005
    @INCOLLECTION{Lord2005,
      title = {Feta: A Light-Weight Architecture for User Oriented Semantic Service Discovery},
      author = {Lord, Phillip and Alper, Pinar and Wroe, Chris and Goble, Carole},
      year = 2005,
      doi = {10.1007/11431053_2},
      booktitle = {The Semantic Web: Research and Applications},
      publisher = {Springer Berlin Heidelberg},
      volume = {3532},
      series = {Lecture Notes in Computer Science},
      pages = {17--31}
    }
    
  • DOI BibTeX
    Y. Sun, A. Wipat, M. Pocock, P.A. Lee, P. Watson, K. Flanagan, J.T. Worthington
    A grid-based system for microbial genome comparison and analysis
    in CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005., p.977-984 Vol. 2, Cardiff, Wales, UK, 2005
    @INPROCEEDINGS{Sun2005,
      title = {A grid-based system for microbial genome comparison and analysis},
      author = {Sun, Y. and Wipat, Anil and Pocock, M. and Lee, P. A. and Watson, P. and Flanagan, K. and Worthington, J. T.},
      year = 2005,
      doi = {10.1109/CCGRID.2005.1558667},
      booktitle = {CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.},
      pages = {977--984 Vol. 2},
      address = {Cardiff, Wales, UK}
    }
    
  • DOI BibTeX
    K. Wolstencroft, T. Oinn, C. Goble, J. Ferris, C. Wroe, P. Lord, K. Glover, R. Stevens
    Panoply of Utilities in Taverna
    in First International Conference on e-Science and Grid Computing (e-Science'05), p.156-162, Pittsburg, PA, USA, 2005
    @INPROCEEDINGS{Wolstencroft2005a,
      title = {Panoply of Utilities in Taverna},
      author = {Wolstencroft, K. and Oinn, T. and Goble, C. and Ferris, J. and Wroe, C. and Lord, P. and Glover, K. and Stevens, R.},
      year = 2005,
      doi = {10.1109/E-SCIENCE.2005.65},
      booktitle = {First International Conference on e-Science and Grid Computing (e-Science'05)},
      pages = {156--162},
      address = {Pittsburg, PA, USA}
    }
    
  • DOI BibTeX
    J. Hallinan
    Evolving Neural Networks for the Classification of Malignancy Associated Changes
    in Intelligent Data Engineering and Automated Learning - IDEAL 2005, Lecture Notes in Computer Science 3578, p.382-389, 2005
    @INCOLLECTION{Hallinan2005,
      title = {Evolving Neural Networks for the Classification of Malignancy Associated Changes},
      author = {Hallinan, Jennifer},
      year = 2005,
      doi = {10.1007/11508069_50},
      booktitle = {Intelligent Data Engineering and Automated Learning - IDEAL 2005},
      publisher = {Springer Berlin Heidelberg},
      volume = {3578},
      series = {Lecture Notes in Computer Science},
      pages = {382--389}
    }
    
  • DOI BibTeX
    P. Andras, B.G. Charlton
    Self-Aware Software – Will It Become a Reality?
    in Self-star Properties in Complex Information Systems, Lecture Notes in Computer Science 3460, p.229-259, 2005
    @INCOLLECTION{Andras2005b,
      title = {Self-Aware Software – Will It Become a Reality?},
      author = {Andras, Peter and Charlton, Bruce G},
      year = 2005,
      doi = {10.1007/11428589_16},
      booktitle = {Self-star Properties in Complex Information Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {3460},
      series = {Lecture Notes in Computer Science},
      pages = {229--259}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor, G. Kendall, M. Gheorghe
    Automated Tile Design for Self-Assembly Conformations
    in 2005 IEEE Congress on Evolutionary Computation, p.1808-1814, Edinburgh, Scotland, UK, 2005
    @INPROCEEDINGS{Terrazas2005a,
      title = {Automated Tile Design for Self-Assembly Conformations},
      author = {Terrazas, G. and Krasnogor, N. and Kendall, G. and Gheorghe, M.},
      year = 2005,
      doi = {10.1109/CEC.2005.1554907},
      booktitle = {2005 IEEE Congress on Evolutionary Computation},
      pages = {1808--1814},
      address = {Edinburgh, Scotland, UK}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor, M. Gheorghe, F. Bernardini, S. Diggle, M. Cámara
    An Environment Aware P-System Model of Quorum Sensing
    in New Computational Paradigms, Lecture Notes in Computer Science 3526, p.479-485, 2005
    @INCOLLECTION{Terrazas2005,
      title = {An Environment Aware P-System Model of Quorum Sensing},
      author = {Terrazas, German and Krasnogor, Natalio and Gheorghe, Marian and Bernardini, Francesco and Diggle, Steve and Cámara, Miguel},
      year = 2005,
      doi = {10.1007/11494645_59},
      booktitle = {New Computational Paradigms},
      publisher = {Springer Berlin Heidelberg},
      volume = {3526},
      series = {Lecture Notes in Computer Science},
      pages = {479--485}
    }
    
  • DOI BibTeX
    F. Bernardini, F.J. Romero-Campero, M. Gheorghe, M.J. Perez-Jimenez, M. Margenstern, S. Verlan, N. Krasnogor
    On P systems with bounded parallelism
    in Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05), p.8 pp., Timisoara, Romania, 2005
    @INPROCEEDINGS{Bernardini2005,
      title = {On P systems with bounded parallelism},
      author = {Bernardini, F. and Romero-Campero, F. J. and Gheorghe, M. and Perez-Jimenez, M. J. and Margenstern, M. and Verlan, S. and Krasnogor, N.},
      year = 2005,
      doi = {10.1109/SYNASC.2005.51},
      booktitle = {Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05)},
      pages = {8 pp.},
      address = {Timisoara, Romania}
    }
    
  • DOI eprint BibTeX
    S. Gustafson, E.K. Burke, N. Krasnogor
    The Tree-String Problem: An Artificial Domain for Structure and Content Search
    in Genetic Programming, Lecture Notes in Computer Science 3447, p.215-226, 2005
    @INCOLLECTION{Gustafson2005,
      title = {The Tree-String Problem: An Artificial Domain for Structure and Content Search},
      author = {Gustafson, Steven and Burke, Edmund K. and Krasnogor, Natalio},
      year = 2005,
      doi = {10.1007/978-3-540-31989-4_19},
      booktitle = {Genetic Programming},
      publisher = {Springer Berlin Heidelberg},
      volume = {3447},
      series = {Lecture Notes in Computer Science},
      pages = {215--226}
    }
    
  • DOI eprint BibTeX
    G. Escuela, G. Ochoa, N. Krasnogor
    Evolving L-Systems to Capture Protein Structure Native Conformations
    in Genetic Programming, Lecture Notes in Computer Science 3447, p.74-84, 2005
    @INCOLLECTION{Escuela2005,
      title = {Evolving L-Systems to Capture Protein Structure Native Conformations},
      author = {Escuela, Gabi and Ochoa, Gabriela and Krasnogor, Natalio},
      year = 2005,
      doi = {10.1007/978-3-540-31989-4_7},
      booktitle = {Genetic Programming},
      publisher = {Springer Berlin Heidelberg},
      volume = {3447},
      series = {Lecture Notes in Computer Science},
      pages = {74--84}
    }
    
  • DOI BibTeX
    K. Garwood, P. Lord, H. Parkinson, N.W. Paton, C. Goble
    Pedro Ontology Services: A Framework for Rapid Ontology Markup
    in The Semantic Web: Research and Applications, Lecture Notes in Computer Science 3532, p.578-591, 2005
    @INCOLLECTION{Garwood2005,
      title = {Pedro Ontology Services: A Framework for Rapid Ontology Markup},
      author = {Garwood, Kevin and Lord, Phillip and Parkinson, Helen and Paton, Norman W. and Goble, Carole},
      year = 2005,
      doi = {10.1007/11431053_39},
      booktitle = {The Semantic Web: Research and Applications},
      publisher = {Springer Berlin Heidelberg},
      volume = {3532},
      series = {Lecture Notes in Computer Science},
      pages = {578--591}
    }
    
  • DOI BibTeX
    K. Wolstencroft, A. Brass, I. Horrocks, P. Lord, U. Sattler, D. Turi, R. Stevens
    A Little Semantic Web Goes a Long Way in Biology
    in The Semantic Web – ISWC 2005, Lecture Notes in Computer Science 3729, p.786-800, 2005
    @INCOLLECTION{Wolstencroft2005,
      title = {A Little Semantic Web Goes a Long Way in Biology},
      author = {Wolstencroft, K. and Brass, A. and Horrocks, I. and Lord, P. and Sattler, U. and Turi, D. and Stevens, R.},
      year = 2005,
      doi = {10.1007/11574620_56},
      booktitle = {The Semantic Web – ISWC 2005},
      publisher = {Springer Berlin Heidelberg},
      volume = {3729},
      series = {Lecture Notes in Computer Science},
      pages = {786--800}
    }
    
  • DOI BibTeX
    W.E. Hart, J.E. Smith, N. Krasnogor
    Recent Advances in Memetic Algorithms
    Studies in Fuzziness and Soft Computing 166, Springer-Verlag, 2005
    @BOOK{Hart2005,
      title = {Recent Advances in Memetic Algorithms},
      author = {Hart, William E. and Smith, J. E. and Krasnogor, N.},
      year = 2005,
      doi = {10.1007/3-540-32363-5},
      publisher = {Springer-Verlag},
      volume = {166},
      series = {Studies in Fuzziness and Soft Computing}
    }
    
  • DOI BibTeX
    A. Goderis, U. Sattler, P. Lord, C. Goble
    Seven Bottlenecks to Workflow Reuse and Repurposing
    in The Semantic Web – ISWC 2005, Lecture Notes in Computer Science 3729, p.323-337, 2005
    @INCOLLECTION{Goderis2005,
      title = {Seven Bottlenecks to Workflow Reuse and Repurposing},
      author = {Goderis, Antoon and Sattler, Ulrike and Lord, Phillip and Goble, Carole},
      year = 2005,
      doi = {10.1007/11574620_25},
      booktitle = {The Semantic Web – ISWC 2005},
      publisher = {Springer Berlin Heidelberg},
      volume = {3729},
      series = {Lecture Notes in Computer Science},
      pages = {323--337}
    }
    

2004

  • DOI BibTeX
    M. Kaiser, M. Lappe
    Perisaccadic Mislocalization Orthogonal to Saccade Direction
    in Neuron, 41(2):293-300, January 2004
    @ARTICLE{Kaiser2004b,
      title = {Perisaccadic Mislocalization Orthogonal to Saccade Direction},
      author = {Kaiser, Marcus and Lappe, Markus},
      year = 2004,
      doi = {10.1016/S0896-6273(03)00849-3},
      month = jan,
      journal = {Neuron},
      volume = {41},
      number = {2},
      pages = {293--300}
    }
    
  • DOI BibTeX
    C. Wroe, C. Goble, M. Greenwood, P. Lord, S. Miles, J. Papay, T. Payne, L. Moreau
    Automating experiments using semantic data in a bioinformatics grid
    in IEEE Intelligent Systems, 19(1):48-55, January 2004
    @ARTICLE{Wroe2004,
      title = {Automating experiments using semantic data in a bioinformatics grid},
      author = {Wroe, C. and Goble, C. and Greenwood, M. and Lord, P. and Miles, S. and Papay, J. and Payne, T. and Moreau, L.},
      year = 2004,
      doi = {10.1109/MIS.2004.1265885},
      month = jan,
      journal = {IEEE Intelligent Systems},
      volume = {19},
      number = {1},
      pages = {48--55}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag
    Spatial growth of real-world networks
    in Physical Review E, 69(3), March 2004
    @ARTICLE{Kaiser2004a,
      title = {Spatial growth of real-world networks},
      author = {Kaiser, Marcus and Hilgetag, Claus C.},
      year = 2004,
      doi = {10.1103/PhysRevE.69.036103},
      month = mar,
      journal = {Physical Review E},
      volume = {69},
      number = {3}
    
  • DOI BibTeX
    J. Hallinan
    Gene duplication and hierarchical modularity in intracellular interaction networks
    in Biosystems, 74(1-3):51-62, April 2004
    @ARTICLE{Hallinan2004a,
      title = {Gene duplication and hierarchical modularity in intracellular interaction networks},
      author = {Hallinan, Jennifer},
      year = 2004,
      doi = {10.1016/j.biosystems.2004.02.004},
      month = apr,
      journal = {Biosystems},
      volume = {74},
      number = {1-3},
      pages = {51--62}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag
    Edge vulnerability in neural and metabolic networks
    in Biological Cybernetics, 90(5), May 2004
    @ARTICLE{Kaiser2004,
      title = {Edge vulnerability in neural and metabolic networks},
      author = {Kaiser, Marcus and Hilgetag, Claus C.},
      year = 2004,
      doi = {10.1007/s00422-004-0479-1},
      month = may,
      journal = {Biological Cybernetics},
      volume = {90},
      number = {5}
    
  • DOI BibTeX
    N. Krasnogor, D.A. Pelta
    Measuring the similarity of protein structures by means of the universal similarity metric
    in Bioinformatics, 20(7):1015-1021, May 2004
    @ARTICLE{Krasnogor2004,
      title = {Measuring the similarity of protein structures by means of the universal similarity metric},
      author = {Krasnogor, N. and Pelta, D. A.},
      year = 2004,
      doi = {10.1093/bioinformatics/bth031},
      month = may,
      journal = {Bioinformatics},
      volume = {20},
      number = {7},
      pages = {1015--1021}
    }
    
  • DOI BibTeX
    M. Kaiser, C.C. Hilgetag
    Modelling the development of cortical systems networks
    in Neurocomputing, 58-60(C):297-302, June 2004
    @ARTICLE{Kaiser2004c,
      title = {Modelling the development of cortical systems networks},
      author = {Kaiser, Marcus and Hilgetag, Claus C.},
      year = 2004,
      doi = {10.1016/j.neucom.2004.01.059},
      month = jun,
      journal = {Neurocomputing},
      volume = {58-60},
      number = {C},
      pages = {297--302}
    }
    
  • DOI BibTeX
    P. Andras, B.G. Charlton
    European science must embrace modernization
    in Nature, 429(6993):699-699, June 2004
    @ARTICLE{Andras2004,
      title = {European science must embrace modernization},
      author = {Andras, Peter and Charlton, Bruce G.},
      year = 2004,
      doi = {10.1038/429699a},
      month = jun,
      journal = {Nature},
      volume = {429},
      number = {6993},
      pages = {699--699}
    }
    
  • DOI BibTeX
    Z. Sándor, P. András
    Alternative sampling methods for estimating multivariate normal probabilities
    in Journal of Econometrics, 120(2):207-234, June 2004
    @ARTICLE{Sandor2004,
      title = {Alternative sampling methods for estimating multivariate normal probabilities},
      author = {Sándor, Zsolt and András, Péter},
      year = 2004,
      doi = {10.1016/S0304-4076(03)00212-4},
      month = jun,
      journal = {Journal of Econometrics},
      volume = {120},
      number = {2},
      pages = {207--234}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor
    Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case
    in Genetic Programming and Evolvable Machines, 5(2):181-201, June 2004
    @ARTICLE{Krasnogor2004a,
      title = {Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case},
      author = {Krasnogor, N.},
      year = 2004,
      doi = {10.1023/B:GENP.0000023687.41210.d7},
      month = jun,
      journal = {Genetic Programming and Evolvable Machines},
      volume = {5},
      number = {2},
      pages = {181--201}
    }
    
  • DOI BibTeX
    P. Andras
    Pattern languages: a new paradigm for neurocomputation
    in Neurocomputing, 58-60(C):223-228, June 2004
    @ARTICLE{Andras2004a,
      title = {Pattern languages: a new paradigm for neurocomputation},
      author = {Andras, Peter},
      year = 2004,
      doi = {10.1016/j.neucom.2004.01.047},
      month = jun,
      journal = {Neurocomputing},
      volume = {58-60},
      number = {C},
      pages = {223--228}
    }
    
  • DOI BibTeX
    R. Stevens, R. McEntire, C. Goble, M. Greenwood, J. Zhao, A. Wipat, P. Li
    myGrid and the drug discovery process
    in Drug Discovery Today: BIOSILICO, 2(4):140-148, July 2004
    @ARTICLE{Stevens2004a,
      title = {myGrid and the drug discovery process},
      author = {Stevens, Robert and McEntire, Robin and Goble, Carole and Greenwood, Mark and Zhao, Jun and Wipat, Anil and Li, Peter},
      year = 2004,
      doi = {10.1016/S1741-8364(04)02412-6},
      month = jul,
      journal = {Drug Discovery Today: BIOSILICO},
      volume = {2},
      number = {4},
      pages = {140--148}
    }
    
  • DOI BibTeX
    B.G. Charlton
    Campaign to revitalise academic medicine: Is the bubble due to burst for medical research funding?
    in BMJ, 329(7460):294-294, July 2004
    @ARTICLE{Charlton2004,
      title = {Campaign to revitalise academic medicine: Is the bubble due to burst for medical research funding?},
      author = {Charlton, B. G},
      year = 2004,
      doi = {10.1136/bmj.329.7460.294-a},
      month = jul,
      journal = {BMJ},
      volume = {329},
      number = {7460},
      pages = {294--294}
    }
    
  • DOI BibTeX
    R.D. Stevens, H.J. Tipney, C.J. Wroe, T.M. Oinn, M. Senger, P.W. Lord, C.A. Goble, A. Brass, M. Tassabehji
    Exploring Williams-Beuren syndrome using myGrid
    in Bioinformatics, 20(Suppl 1):i303-i310, August 2004
    @ARTICLE{Stevens2004,
      title = {Exploring Williams-Beuren syndrome using myGrid},
      author = {Stevens, R. D. and Tipney, H. J. and Wroe, C. J. and Oinn, T. M. and Senger, M. and Lord, P. W. and Goble, C. A. and Brass, A. and Tassabehji, M.},
      year = 2004,
      doi = {10.1093/bioinformatics/bth944},
      month = aug,
      journal = {Bioinformatics},
      volume = {20},
      number = {Suppl 1},
      pages = {i303--i310}
    }
    
  • DOI eprint BibTeX
    M. Lozano, F. Herrera, N. Krasnogor, D. Molina
    Real-Coded Memetic Algorithms with Crossover Hill-Climbing
    in Evolutionary Computation, 12(3):273-302, September 2004
    @ARTICLE{Lozano2004,
      title = {Real-Coded Memetic Algorithms with Crossover Hill-Climbing},
      author = {Lozano, Manuel and Herrera, Francisco and Krasnogor, Natalio and Molina, Daniel},
      year = 2004,
      doi = {10.1162/1063656041774983},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {12},
      number = {3},
      pages = {273--302}
    }
    
  • DOI BibTeX
    W.E. Hart, N. Krasnogor, J.E. Smith
    Editorial Introduction Special Issue on Memetic Algorithms
    in Evolutionary Computation, 12(3):v-vi, September 2004
    @ARTICLE{Hart2004,
      title = {Editorial Introduction Special Issue on Memetic Algorithms},
      author = {Hart, W. E. and Krasnogor, N. and Smith, J. E.},
      year = 2004,
      doi = {10.1162/1063656041775009},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {12},
      number = {3},
      pages = {v--vi}
    }
    
  • DOI BibTeX
    O. Sporns, D. Chialvo, M. Kaiser, C. Hilgetag
    Organization, development and function of complex brain networks
    in Trends in Cognitive Sciences, 8(9):418-425, September 2004
    @ARTICLE{Sporns2004,
      title = {Organization, development and function of complex brain networks},
      author = {Sporns, O and Chialvo, D and Kaiser, M and Hilgetag, C},
      year = 2004,
      doi = {10.1016/j.tics.2004.07.008},
      month = sep,
      journal = {Trends in Cognitive Sciences},
      volume = {8},
      number = {9},
      pages = {418--425}
    }
    
  • DOI BibTeX
    T. Oinn, M. Addis, J. Ferris, D. Marvin, M. Senger, M. Greenwood, T. Carver, K. Glover, M.R. Pocock, A. Wipat, P. Li
    Taverna: a tool for the composition and enactment of bioinformatics workflows
    in Bioinformatics, 20(17):3045-3054, November 2004
    @ARTICLE{Oinn2004,
      title = {Taverna: a tool for the composition and enactment of bioinformatics workflows},
      author = {Oinn, T. and Addis, M. and Ferris, J. and Marvin, D. and Senger, M. and Greenwood, M. and Carver, T. and Glover, K. and Pocock, M. R. and Wipat, A. and Li, P.},
      year = 2004,
      doi = {10.1093/bioinformatics/bth361},
      month = nov,
      journal = {Bioinformatics},
      volume = {20},
      number = {17},
      pages = {3045--3054}
    }
    
  • DOI BibTeX
    O.J. Shaw, C. Harwood, L.J. Steggles, A. Wipat
    SARGE: a tool for creation of putative genetic networks
    in Bioinformatics, 20(18):3638-3640, December 2004
    @ARTICLE{Shaw2004,
      title = {SARGE: a tool for creation of putative genetic networks},
      author = {Shaw, O. J. and Harwood, C. and Steggles, L. J. and Wipat, A.},
      year = 2004,
      doi = {10.1093/bioinformatics/bth395},
      month = dec,
      journal = {Bioinformatics},
      volume = {20},
      number = {18},
      pages = {3638--3640}
    }
    
  • DOI BibTeX
    P. Lord, S. Bechhofer, M.D. Wilkinson, G. Schiltz, D. Gessler, D. Hull, C. Goble, L. Stein
    Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt
    in The Semantic Web – ISWC 2004, Lecture Notes in Computer Science 3298, p.350-364, 2004
    @INCOLLECTION{Lord2004,
      title = {Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt},
      author = {Lord, Phillip and Bechhofer, Sean and Wilkinson, Mark D. and Schiltz, Gary and Gessler, Damian and Hull, Duncan and Goble, Carole and Stein, Lincoln},
      year = 2004,
      doi = {10.1007/978-3-540-30475-3_25},
      booktitle = {The Semantic Web – ISWC 2004},
      publisher = {Springer Berlin Heidelberg},
      volume = {3298},
      series = {Lecture Notes in Computer Science},
      pages = {350--364}
    }
    
  • DOI BibTeX
    J. Aguilar-Ruiz, J. Bacardit, F. Divina
    Experimental Evaluation of Discretization Schemes for Rule Induction
    in Genetic and Evolutionary Computation – GECCO 2004, Lecture Notes in Computer Science 3102, p.828-839, 2004
    @INCOLLECTION{Aguilar-Ruiz2004,
      title = {Experimental Evaluation of Discretization Schemes for Rule Induction},
      author = {Aguilar-Ruiz, Jesus and Bacardit, Jaume and Divina, Federico},
      year = 2004,
      doi = {10.1007/978-3-540-24854-5_85},
      booktitle = {Genetic and Evolutionary Computation – GECCO 2004},
      publisher = {Springer Berlin Heidelberg},
      volume = {3102},
      series = {Lecture Notes in Computer Science},
      pages = {828--839}
    }
    
  • DOI BibTeX
    J. Bacardit, D.E. Goldberg, M.V. Butz, X. Llorà, J.M. Garrell
    Speeding-Up Pittsburgh Learning Classifier Systems: Modeling Time and Accuracy
    in Parallel Problem Solving from Nature - PPSN VIII, Lecture Notes in Computer Science 3242, p.1021-1031, 2004
    @INCOLLECTION{Bacardit2004a,
      title = {Speeding-Up Pittsburgh Learning Classifier Systems: Modeling Time and Accuracy},
      author = {Bacardit, Jaume and Goldberg, David E. and Butz, Martin V. and Llorà, Xavier and Garrell, Josep M.},
      year = 2004,
      doi = {10.1007/978-3-540-30217-9_103},
      booktitle = {Parallel Problem Solving from Nature - PPSN VIII},
      publisher = {Springer Berlin Heidelberg},
      volume = {3242},
      series = {Lecture Notes in Computer Science},
      pages = {1021--1031}
    }
    
  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Analysis and Improvements of the Adaptive Discretization Intervals Knowledge Representation
    in Genetic and Evolutionary Computation – GECCO 2004, Lecture Notes in Computer Science 3103, p.726-738, 2004
    @INCOLLECTION{Bacardit2004b,
      title = {Analysis and Improvements of the Adaptive Discretization Intervals Knowledge Representation},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2004,
      doi = {10.1007/978-3-540-24855-2_88},
      booktitle = {Genetic and Evolutionary Computation – GECCO 2004},
      publisher = {Springer Berlin Heidelberg},
      volume = {3103},
      series = {Lecture Notes in Computer Science},
      pages = {726--738}
    }
    
  • DOI BibTeX
    J.S. Hallinan
    Cluster analysis of the p53 genetic regulatory network: topology and biology
    in IGARSS 2004. 2004 IEEE International Geoscience and Remote Sensing (IEEE Cat. No.04CH37612), p.1-8, La Jolla, CA, USA, 2004
    @INPROCEEDINGS{Hallinan2004,
      title = {Cluster analysis of the p53 genetic regulatory network: topology and biology},
      author = {Hallinan, J. S.},
      year = 2004,
      doi = {10.1109/CIBCB.2004.1393924},
      booktitle = {IGARSS 2004. 2004 IEEE International Geoscience and Remote Sensing (IEEE Cat. No.04CH37612)},
      pages = {1--8},
      address = {La Jolla, CA, USA}
    }
    
  • eprint BibTeX
    J. Bacardit
    Pittsburgh Genetics-Based Machine Learning in the Data Mining era: Representations, generalization, and run-time
    PhD thesis, Ramon Llull University, Barcelona, Spain, 2004
    @PHDTHESIS{Bacardit2004,
      title = {Pittsburgh Genetics-Based Machine Learning in the Data Mining era: Representations, generalization, and run-time},
      author = {Bacardit, Jaume},
      year = 2004,
      school = {Ramon Llull University, Barcelona, Spain}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, S. Gustafson
    A Study on the use of ``self-generation'' in memetic algorithms
    in Natural Computing, 3(1):53-76, 2004
    @ARTICLE{Krasnogor2004b,
      title = {A Study on the use of ``self-generation'' in memetic algorithms},
      author = {Krasnogor, Natalio and Gustafson, Steven},
      year = 2004,
      doi = {10.1023/B:NACO.0000023419.83147.67},
      journal = {Natural Computing},
      volume = {3},
      number = {1},
      pages = {53--76}
    }
    
  • DOI BibTeX
    O.C. Idowu, S.J. Lynden, M.P. Young, P. Andras
    Bacillus subtilis protein interaction network analysis
    in Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004., p.592-594, Stanford, CA, USA, 2004
    @INPROCEEDINGS{Idowu2004,
      title = {Bacillus subtilis protein interaction network analysis},
      author = {Idowu, O. C. and Lynden, S. J. and Young, M. P. and Andras, P.},
      year = 2004,
      doi = {10.1109/CSB.2004.1332520},
      booktitle = {Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.},
      pages = {592--594},
      address = {Stanford, CA, USA}
    }
    
  • DOI BibTeX
    C.C. Hilgetag, M. Kaiser
    Clustered Organization of Cortical Connectivity
    in Neuroinformatics, 2(3):353-360, 2004
    @ARTICLE{Hilgetag2004,
      title = {Clustered Organization of Cortical Connectivity},
      author = {Hilgetag, Claus C. and Kaiser, Marcus},
      year = 2004,
      doi = {10.1385/NI:2:3:353},
      journal = {Neuroinformatics},
      volume = {2},
      number = {3},
      pages = {353--360}
    }
    
  • DOI BibTeX
    P. Periorellis, O.C. Idowu, S.J. Lynden, M.P. Young, P. Andras
    Dealing with complex networks of process interactions: a security measure
    in Proceedings. Ninth IEEE International Conference on Engineering of Complex Computer Systems, p.29-36, Florence, Italy, 2004
    @INPROCEEDINGS{Periorellis2004,
      title = {Dealing with complex networks of process interactions: a security measure},
      author = {Periorellis, P. and Idowu, O. C. and Lynden, S. J. and Young, M. P. and Andras, P.},
      year = 2004,
      doi = {10.1109/ICECCS.2004.1310901},
      booktitle = {Proceedings. Ninth IEEE International Conference on Engineering of Complex Computer Systems},
      pages = {29--36},
      address = {Florence, Italy}
    }
    

2003

  • DOI BibTeX
    K. Kobayashi, S.D. Ehrlich, A. Albertini, G. Amati, K.K. Andersen, M. Arnaud, K. Asai, S. Ashikaga, S. Aymerich, P. Bessieres, F. Boland, S.C. Brignell, S. Bron, K. Bunai, J. Chapuis, L.C. Christiansen, A. Danchin, M. Debarbouille, E. Dervyn, E. Deuerling, K. Devine, S.K. Devine, O. Dreesen, J. Errington, S. Fillinger, S.J. Foster, Y. Fujita, A. Galizzi, R. Gardan, C. Eschevins, T. Fukushima, K. Haga, et al.
    Essential Bacillus subtilis genes
    in Proceedings of the National Academy of Sciences, 100(8):4678-4683, April 2003
    @ARTICLE{Kobayashi2003,
      title = {Essential Bacillus subtilis genes},
      author = {Kobayashi, K. and Ehrlich, S. D. and Albertini, A. and Amati, G. and Andersen, K. K. and Arnaud, M. and Asai, K. and Ashikaga, S. and Aymerich, S. and Bessieres, P. and Boland, F. and Brignell, S. C. and Bron, S. and Bunai, K. and Chapuis, J. and Christiansen, L. C. and Danchin, A. and Debarbouille, M. and Dervyn, E. and Deuerling, E. and Devine, K. and Devine, S. K. and Dreesen, O. and Errington, J. and Fillinger, S. and Foster, S. J. and Fujita, Y. and Galizzi, A. and Gardan, R. and Eschevins, C. and Fukushima, T. and Haga, K. and Harwood, C. R. and Hecker, M. and Hosoya, D. and Hullo, M. F. and Kakeshita, H. and Karamata, D. and Kasahara, Y. and Kawamura, F. and Koga, K. and Koski, P. and Kuwana, R. and Imamura, D. and Ishimaru, M. and Ishikawa, S. and Ishio, I. and Le Coq, D. and Masson, A. and Mauel, C. and Meima, R. and Mellado, R. P. and Moir, A. and Moriya, S. and Nagakawa, E. and Nanamiya, H. and Nakai, S. and Nygaard, P. and Ogura, M. and Ohanan, T. and O'Reilly, M. and O'Rourke, M. and Pragai, Z. and Pooley, H. M. and Rapoport, G. and Rawlins, J. P. and Rivas, L. A. and Rivolta, C. and Sadaie, A. and Sadaie, Y. and Sarvas, M. and Sato, T. and Saxild, H. H. and Scanlan, E. and Schumann, W. and Seegers, J. F. M. L. and Sekiguchi, J. and Sekowska, A. and Seror, S. J. and Simon, M. and Stragier, P. and Studer, R. and Takamatsu, H. and Tanaka, T. and Takeuchi, M. and Thomaides, H. B. and Vagner, V. and van Dijl, J. M. and Watabe, K. and Wipat, A. and Yamamoto, H. and Yamamoto, M. and Yamamoto, Y. and Yamane, K. and Yata, K. and Yoshida, K. and Yoshikawa, H. and Zuber, U. and Ogasawara, N.},
      year = 2003,
      doi = {10.1073/pnas.0730515100},
      month = apr,
      journal = {Proceedings of the National Academy of Sciences},
      volume = {100},
      number = {8},
      pages = {4678--4683}
    }
    
  • DOI BibTeX
    P. Andras
    Comparing neurophysiological measurements of simulated and real brains
    in Neurocomputing, 52-54(C):677-682, June 2003
    @ARTICLE{Andras2003,
      title = {Comparing neurophysiological measurements of simulated and real brains},
      author = {Andras, Peter},
      year = 2003,
      doi = {10.1016/S0925-2312(02)00729-4},
      month = jun,
      journal = {Neurocomputing},
      volume = {52-54},
      number = {C},
      pages = {677--682}
    }
    
  • DOI BibTeX
    P. Andras, R. Kozma, P. Erdi
    Editorial
    in Journal of Integrative Neuroscience, 02(01):1-2, June 2003
    @ARTICLE{Andras2003a,
      title = {Editorial},
      author = {Andras, Peter and Kozma, Robert and Erdi, Peter},
      year = 2003,
      doi = {10.1142/S0219635203000226},
      month = jun,
      journal = {Journal of Integrative Neuroscience},
      volume = {02},
      number = {01},
      pages = {1--2}
    }
    
  • DOI BibTeX
    P.W. Lord, R.D. Stevens, A. Brass, C.A. Goble
    Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
    in Bioinformatics, 19(10):1275-1283, July 2003
    @ARTICLE{Lord2003,
      title = {Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation},
      author = {Lord, P. W. and Stevens, R. D. and Brass, A. and Goble, C. A.},
      year = 2003,
      doi = {10.1093/bioinformatics/btg153},
      month = jul,
      journal = {Bioinformatics},
      volume = {19},
      number = {10},
      pages = {1275--1283}
    }
    
  • DOI BibTeX
    M. Teixidó, I. Belda, X. Roselló, S. González, M. Fabre, X. Llorá, J. Bacardit, J.M. Garrell, S. Vilaró, F. Albericio, E. Giralt
    Development of a Genetic Algorithm to Design and Identify Peptides that can Cross the Blood-Brain Barrier
    in QSAR & Combinatorial Science, 22(7):745-753, October 2003
    @ARTICLE{Teixido2003,
      title = {Development of a Genetic Algorithm to Design and Identify Peptides that can Cross the Blood-Brain Barrier},
      author = {Teixidó, Meritxell and Belda, Ignasi and Roselló, Xavier and González, Sonia and Fabre, Myriam and Llorá, Xavier and Bacardit, Jaume and Garrell, Josep M. and Vilaró, Senen and Albericio, Fernando and Giralt, Ernest},
      year = 2003,
      doi = {10.1002/qsar.200320004},
      month = oct,
      journal = {QSAR & Combinatorial Science},
      volume = {22},
      number = {7},
      pages = {745--753}
    }
    
  • DOI BibTeX
    S. Bechhofer, R. Volz, P. Lord
    Cooking the Semantic Web with the OWL API
    in The Semantic Web - ISWC 2003, Lecture Notes in Computer Science 2870, p.659-675, 2003
    @INCOLLECTION{Bechhofer2003,
      title = {Cooking the Semantic Web with the OWL API},
      author = {Bechhofer, Sean and Volz, Raphael and Lord, Phillip},
      year = 2003,
      doi = {10.1007/978-3-540-39718-2_42},
      booktitle = {The Semantic Web - ISWC 2003},
      publisher = {Springer Berlin Heidelberg},
      volume = {2870},
      series = {Lecture Notes in Computer Science},
      pages = {659--675}
    }
    
  • DOI BibTeX
    J. Hallinan
    Self-Organization Leads to Hierarchical Modularity in an Internet Community
    in Knowledge-Based Intelligent Information and Engineering Systems, Lecture Notes in Computer Science 2773, p.914-920, 2003
    @INCOLLECTION{Hallinan2003,
      title = {Self-Organization Leads to Hierarchical Modularity in an Internet Community},
      author = {Hallinan, Jennifer},
      year = 2003,
      doi = {10.1007/978-3-540-45224-9_122},
      booktitle = {Knowledge-Based Intelligent Information and Engineering Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {2773},
      series = {Lecture Notes in Computer Science},
      pages = {914--920}
    }
    
  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Evolving Multiple Discretizations with Adaptive Intervals for a Pittsburgh Rule-Based Learning Classifier System
    in Genetic and Evolutionary Computation — GECCO 2003, Lecture Notes in Computer Science 2724, p.1818-1831, 2003
    @INCOLLECTION{Bacardit2003,
      title = {Evolving Multiple Discretizations with Adaptive Intervals for a Pittsburgh Rule-Based Learning Classifier System},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2003,
      doi = {10.1007/3-540-45110-2_80},
      booktitle = {Genetic and Evolutionary Computation — GECCO 2003},
      publisher = {Springer Berlin Heidelberg},
      volume = {2724},
      series = {Lecture Notes in Computer Science},
      pages = {1818--1831}
    }
    
  • DOI BibTeX
    R. Stevens, C. Wroe, S. Bechhofer, P. Lord, A. Rector, C. Goble
    Building Ontologies in DAML + OIL
    in Comparative and Functional Genomics, 4(1):133-141, 2003
    @ARTICLE{Stevens2003,
      title = {Building Ontologies in DAML + OIL},
      author = {Stevens, Robert and Wroe, Chris and Bechhofer, Sean and Lord, Phillip and Rector, Alan and Goble, Carole},
      year = 2003,
      doi = {10.1002/cfg.233},
      journal = {Comparative and Functional Genomics},
      volume = {4},
      number = {1},
      pages = {133--141}
    }
    
  • DOI BibTeX
    P. Andras, G. Roberts, J. Lazarus
    Environmental Risk, Cooperation, and Communication Complexity
    in Adaptive Agents and Multi-Agent Systems, Lecture Notes in Computer Science 2636, p.49-65, 2003
    @INCOLLECTION{Andras2003b,
      title = {Environmental Risk, Cooperation, and Communication Complexity},
      author = {Andras, Peter and Roberts, Gilbert and Lazarus, John},
      year = 2003,
      doi = {10.1007/3-540-44826-8_4},
      booktitle = {Adaptive Agents and Multi-Agent Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {2636},
      series = {Lecture Notes in Computer Science},
      pages = {49--65}
    }
    

2002

  • DOI BibTeX
    P. Andras, S. Panzeri, M. P. Young
    Toward statistically valid population decoding models
    in Neurocomputing, 44-46(C):269-274, June 2002
    @ARTICLE{Andras2002a,
      title = {Toward statistically valid population decoding models},
      author = {Andras, Peter and Panzeri, Stefano and P. Young, Malcolm},
      year = 2002,
      doi = {10.1016/S0925-2312(02)00349-1},
      month = jun,
      journal = {Neurocomputing},
      volume = {44-46},
      number = {C},
      pages = {269--274}
    }
    
  • DOI BibTeX
    P. Andras, B.G. Charlton
    Democratic deficit and communication hyper-inflation in health care systems
    in Journal of Evaluation in Clinical Practice, 8(3):291-297, August 2002
    @ARTICLE{Andras2002b,
      title = {Democratic deficit and communication hyper-inflation in health care systems},
      author = {Andras, Peter and Charlton, Bruce G.},
      year = 2002,
      doi = {10.1046/j.1365-2753.2002.00354.x},
      month = aug,
      journal = {Journal of Evaluation in Clinical Practice},
      volume = {8},
      number = {3},
      pages = {291--297}
    }
    
  • DOI BibTeX
    P.W. Lord, J.N. Selley, T.K. Attwood
    CINEMA-MX: a modular multiple alignment editor
    in Bioinformatics, 18(10):1402-1403, October 2002
    @ARTICLE{Lord2002a,
      title = {CINEMA-MX: a modular multiple alignment editor},
      author = {Lord, P. W. and Selley, J. N. and Attwood, T. K.},
      year = 2002,
      doi = {10.1093/bioinformatics/18.10.1402},
      month = oct,
      journal = {Bioinformatics},
      volume = {18},
      number = {10},
      pages = {1402--1403}
    }
    
  • DOI BibTeX
    P.W. Lord, R.D. Stevens, A. Brass, C.A. Goble
    Semantic Similarity Measures As Tools For Exploring The Gene Ontology
    in Biocomputing 2003, p.601-612, Kauai, Hawaii, December 2002
    @INPROCEEDINGS{Lord2002,
      title = {Semantic Similarity Measures As Tools For Exploring The Gene Ontology},
      author = {Lord, P. W. and Stevens, R. D. and Brass, A. and Goble, C. A.},
      year = 2002,
      doi = {10.1142/9789812776303_0056},
      month = dec,
      booktitle = {Biocomputing 2003},
      pages = {601--612},
      address = {Kauai, Hawaii}
    }
    
  • DOI BibTeX
    N. Geard, J. Wiles, J. Hallinan, B. Tonkes, B. Skellett
    A comparison of neutral landscapes - NK, NKp and NKq
    in Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat. No.02TH8600), p.205-210, Honolulu, HI, USA, 2002
    @INPROCEEDINGS{Geard2002,
      title = {A comparison of neutral landscapes - NK, NKp and NKq},
      author = {Geard, N. and Wiles, J. and Hallinan, J. and Tonkes, B. and Skellett, B.},
      year = 2002,
      doi = {10.1109/CEC.2002.1006234},
      booktitle = {Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat. No.02TH8600)},
      pages = {205--210},
      address = {Honolulu, HI, USA}
    }
    
  • DOI BibTeX
    P. Andras
    Spectrum-based design of sinusoidal RBF neural networks
    in Proceedings of the 2002 International Joint Conference on Neural Networks. IJCNN'02 (Cat. No.02CH37290), p.1421-1426, Honolulu, HI, USA, 2002
    @INPROCEEDINGS{Andras2002,
      title = {Spectrum-based design of sinusoidal RBF neural networks},
      author = {Andras, P.},
      year = 2002,
      doi = {10.1109/IJCNN.2002.1007725},
      booktitle = {Proceedings of the 2002 International Joint Conference on Neural Networks. IJCNN'02 (Cat. No.02CH37290)},
      pages = {1421--1426},
      address = {Honolulu, HI, USA}
    }
    
  • DOI eprint BibTeX
    E. Burke, S. Gustafson, G. Kendall, N. Krasnogor
    Advanced Population Diversity Measures in Genetic Programming
    in Parallel Problem Solving from Nature — PPSN VII, Lecture Notes in Computer Science 2439, p.341-350, 2002
    @INCOLLECTION{Burke2002,
      title = {Advanced Population Diversity Measures in Genetic Programming},
      author = {Burke, Edmund and Gustafson, Steven and Kendall, Graham and Krasnogor, Natalio},
      year = 2002,
      doi = {10.1007/3-540-45712-7_33},
      booktitle = {Parallel Problem Solving from Nature — PPSN VII},
      publisher = {Springer Berlin Heidelberg},
      volume = {2439},
      series = {Lecture Notes in Computer Science},
      pages = {341--350}
    }
    
  • DOI BibTeX
    J. Bacardit, J. Maria Garrell
    Evolution of Multi-adaptive Discretization Intervals for a Rule-Based Genetic Learning System
    in Advances in Artificial Intelligence — IBERAMIA 2002, Lecture Notes in Computer Science 2527, p.350-360, 2002
    @INCOLLECTION{Bacardit2002,
      title = {Evolution of Multi-adaptive Discretization Intervals for a Rule-Based Genetic Learning System},
      author = {Bacardit, Jaume and Maria Garrell, Josep},
      year = 2002,
      doi = {10.1007/3-540-36131-6_36},
      booktitle = {Advances in Artificial Intelligence — IBERAMIA 2002},
      publisher = {Springer Berlin Heidelberg},
      volume = {2527},
      series = {Lecture Notes in Computer Science},
      pages = {350--360}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, B.P. Blackburne, E.K. Burke, J.D. Hirst
    Multimeme Algorithms for Protein Structure Prediction
    in Parallel Problem Solving from Nature — PPSN VII, Lecture Notes in Computer Science 2439, p.769-778, 2002
    @INCOLLECTION{Krasnogor2002,
      title = {Multimeme Algorithms for Protein Structure Prediction},
      author = {Krasnogor, N. and Blackburne, B. P. and Burke, E. K. and Hirst, J. D.},
      year = 2002,
      doi = {10.1007/3-540-45712-7_74},
      booktitle = {Parallel Problem Solving from Nature — PPSN VII},
      publisher = {Springer Berlin Heidelberg},
      volume = {2439},
      series = {Lecture Notes in Computer Science},
      pages = {769--778}
    }
    

2001

  • DOI BibTeX
    P. Zuliani
    Logical reversibility
    in IBM Journal of Research and Development, 45(6):807-818, November 2001
    @ARTICLE{Zuliani2001,
      title = {Logical reversibility},
      author = {Zuliani, P.},
      year = 2001,
      doi = {10.1147/rd.456.0807},
      month = nov,
      journal = {IBM Journal of Research and Development},
      volume = {45},
      number = {6},
      pages = {807--818}
    }
    
  • DOI BibTeX
    P.W. Lord, J.R. Reich, A. Mitchell, R.D. Stevens, C.A. Goble
    PRECIS: an automated pipeline for producing concise reports about proteins
    in Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001), p.57-64, Bethesda, MD, USA, 2001
    @INPROCEEDINGS{Lord2001,
      title = {PRECIS: an automated pipeline for producing concise reports about proteins},
      author = {Lord, P. W. and Reich, J. R. and Mitchell, A. and Stevens, R. D. and Goble, C. A.},
      year = 2001,
      doi = {10.1109/BIBE.2001.974412},
      booktitle = {Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001)},
      pages = {57--64},
      address = {Bethesda, MD, USA}
    }
    
  • DOI BibTeX
    P. Andras
    The Sierpinski brain
    in IJCNN'01. International Joint Conference on Neural Networks. Proceedings (Cat. No.01CH37222), p.654-659, Washington, DC, USA, 2001
    @INPROCEEDINGS{Andras2001a,
      title = {The Sierpinski brain},
      author = {Andras, P.},
      year = 2001,
      doi = {10.1109/IJCNN.2001.939101},
      booktitle = {IJCNN'01. International Joint Conference on Neural Networks. Proceedings (Cat. No.01CH37222)},
      pages = {654--659},
      address = {Washington, DC, USA}
    }
    
  • DOI BibTeX
    P. András
    The Role of Brain Chaos
    in Emergent Neural Computational Architectures Based on Neuroscience, Lecture Notes in Computer Science 2036, p.296-310, 2001
    @INCOLLECTION{Andras2001,
      title = {The Role of Brain Chaos},
      author = {András, Péter},
      year = 2001,
      doi = {10.1007/3-540-44597-8_22},
      booktitle = {Emergent Neural Computational Architectures Based on Neuroscience},
      publisher = {Springer Berlin Heidelberg},
      volume = {2036},
      series = {Lecture Notes in Computer Science},
      pages = {296--310}
    }
    
  • DOI BibTeX
    C.R. Harwood, S.G. Crawshaw, A. Wipat
    From Genome to Function: Systematic Analysis of the Soil Bacterium Bacillus subtilis
    in Comparative and Functional Genomics, 2(1):22-24, 2001
    @ARTICLE{Harwood2001,
      title = {From Genome to Function: Systematic Analysis of the Soil Bacterium Bacillus subtilis},
      author = {Harwood, Colin R. and Crawshaw, Samuel G. and Wipat, Anil},
      year = 2001,
      doi = {10.1002/cfg.69},
      journal = {Comparative and Functional Genomics},
      volume = {2},
      number = {1},
      pages = {22--24}
    }
    

2000

  • DOI BibTeX
    J.W. Sanders, P. Zuliani
    Quantum Programming
    in Mathematics of Program Construction, Lecture Notes in Computer Science 1837, p.80-99, 2000
    @INCOLLECTION{Sanders2000,
      title = {Quantum Programming},
      author = {Sanders, J. W. and Zuliani, P.},
      year = 2000,
      doi = {10.1007/10722010_6},
      booktitle = {Mathematics of Program Construction},
      publisher = {Springer Berlin Heidelberg},
      volume = {1837},
      series = {Lecture Notes in Computer Science},
      pages = {80--99}
    }
    
  • DOI BibTeX
    J.S. Hallinan, J. Wiles
    Modeling the spread of antibiotic resistance
    in Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512), p.1152-1159, La Jolla, CA, USA, 2000
    @INPROCEEDINGS{Hallinan2000,
      title = {Modeling the spread of antibiotic resistance},
      author = {Hallinan, J. S. and Wiles, J.},
      year = 2000,
      doi = {10.1109/CEC.2000.870778},
      booktitle = {Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512)},
      pages = {1152--1159},
      address = {La Jolla, CA, USA}
    }
    

1999

  • DOI BibTeX
    A. Wipat
    The Bacillus subtilis genome sequence: the molecular blueprint of a soil bacterium
    in FEMS Microbiology Ecology, 28(1):1-9, January 1999
    @ARTICLE{Wipat1999,
      title = {The Bacillus subtilis genome sequence: the molecular blueprint of a soil bacterium},
      author = {Wipat, A},
      year = 1999,
      doi = {10.1016/S0168-6496(98)00080-4},
      month = jan,
      journal = {FEMS Microbiology Ecology},
      volume = {28},
      number = {1},
      pages = {1--9}
    }
    

1998

  • DOI BibTeX
    A. Wipat, S.C. Brignell, B.J. Guy, M. Rose, P.T. Emmerson, C.R. Harwood
    The yvsA-yvqA (293 -289 ) region of the Bacillus subtilis chromosome containing genes involved in metal ion uptake and a putative sigma factor
    in Microbiology, 144(6):1593-1600, June 1998
    @ARTICLE{Wipat1998,
      title = {The yvsA-yvqA (293 -289 ) region of the Bacillus subtilis chromosome containing genes involved in metal ion uptake and a putative sigma factor},
      author = {Wipat, A. and Brignell, S. C. and Guy, B. J. and Rose, M. and Emmerson, P. T. and Harwood, C. R.},
      year = 1998,
      doi = {10.1099/00221287-144-6-1593},
      month = jun,
      journal = {Microbiology},
      volume = {144},
      number = {6},
      pages = {1593--1600}
    }
    

1997

  • DOI BibTeX
    S.F. Gothel, R. Schmid, A. Wipat, N.M. Carter, P.T. Emmerson, C.R. Harwood, M.A. Marahiel
    An Internal FK506-Binding Domain is the Catalytic Core of the Prolyl Isomerase Activity Associated with the Bacillus Subtilis Trigger Factor
    in European Journal of Biochemistry, 244(1):59-65, February 1997
    @ARTICLE{Gothel1997,
      title = {An Internal FK506-Binding Domain is the Catalytic Core of the Prolyl Isomerase Activity Associated with the Bacillus Subtilis Trigger Factor},
      author = {Gothel, Sven F. and Schmid, Roland and Wipat, Anil and Carter, Noel M. and Emmerson, Peter T. and Harwood, Colin R. and Marahiel, Mohamed A.},
      year = 1997,
      doi = {10.1111/j.1432-1033.1997.00059.x},
      month = feb,
      journal = {European Journal of Biochemistry},
      volume = {244},
      number = {1},
      pages = {59--65}
    }
    

1996

  • DOI BibTeX
    C.R. Harwood, A. Wipat
    Sequencing and functional analysis of the genome of Bacillus subtilis strain 168
    in FEBS Letters, 389(1):84-87, June 1996
    @ARTICLE{Harwood1996,
      title = {Sequencing and functional analysis of the genome of Bacillus subtilis strain 168},
      author = {Harwood, Colin R. and Wipat, Anil},
      year = 1996,
      doi = {10.1016/0014-5793(96)00524-8},
      month = jun,
      journal = {FEBS Letters},
      volume = {389},
      number = {1},
      pages = {84--87}
    }
    
  • DOI BibTeX
    A. Wipat, N. Carter, S.C. Brignell, B.J. Guy, K. Piper, J. Sanders, P.T. Emmerson, C.R. Harwood
    The dnaB-pheA (256 -240 ) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism
    in Microbiology, 142(11):3067-3078, November 1996
    @ARTICLE{Wipat1996,
      title = {The dnaB-pheA (256 -240 ) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism},
      author = {Wipat, A. and Carter, N. and Brignell, S. C. and Guy, B. J. and Piper, K. and Sanders, J. and Emmerson, P. T. and Harwood, C. R.},
      year = 1996,
      doi = {10.1099/13500872-142-11-3067},
      month = nov,
      journal = {Microbiology},
      volume = {142},
      number = {11},
      pages = {3067--3078}
    }
    
  • DOI BibTeX
    U. Gerth, A. Wipat, C.R. Harwood, N. Carter, P.T. Emmerson, M. Hecker
    Sequence and transcriptional analysis of clpX, a class-III heat-shock gene of Bacillus subtilis
    in Gene, 181(1-2):77-83, November 1996
    @ARTICLE{Gerth1996,
      title = {Sequence and transcriptional analysis of clpX, a class-III heat-shock gene of Bacillus subtilis},
      author = {Gerth, Ulf and Wipat, Anil and Harwood, Colin R. and Carter, Noel and Emmerson, Peter T. and Hecker, Michael},
      year = 1996,
      doi = {10.1016/S0378-1119(96)00467-2},
      month = nov,
      journal = {Gene},
      volume = {181},
      number = {1-2},
      pages = {77--83}
    }
    

1994

  • DOI BibTeX
    A. Wipat, E.M.H. Wellington, V.A. Saunders
    Monoclonal antibodies for Streptomyces lividans and their use for immunomagnetic capture of spores from soil
    in Microbiology, 140(8):2067-2076, August 1994
    @ARTICLE{Wipat1994,
      title = {Monoclonal antibodies for Streptomyces lividans and their use for immunomagnetic capture of spores from soil},
      author = {Wipat, A. and Wellington, E. M. H. and Saunders, V. A.},
      year = 1994,
      doi = {10.1099/13500872-140-8-2067},
      month = aug,
      journal = {Microbiology},
      volume = {140},
      number = {8},
      pages = {2067--2076}
    }