Publications

2017

  • DOI BibTeX
    A. Garcia-Piquer, J. Bacardit, A. Fornells, E. Golobardes
    Scaling-up multiobjective evolutionary clustering algorithms using stratification
    in Pattern Recognition Letters, 93(C):69-77, July 2017
    @ARTICLE{Garcia-Piquer2016,
      title = {Scaling-up multiobjective evolutionary clustering algorithms using stratification},
      author = {Garcia-Piquer, Alvaro and Bacardit, Jaume and Fornells, Albert and Golobardes, Elisabet},
      year = 2017,
      doi = {10.1016/j.patrec.2016.12.001},
      month = jul,
      journal = {Pattern Recognition Letters},
      volume = {93},
      number = {C},
      pages = {69--77}
    }
    
  • DOI BibTeX
    J. Kozyra, A. Ceccarelli, E. Torelli, A. Lopiccolo, J. Gu, H. Fellermann, U. Stimming, N. Krasnogor
    Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami
    in ACS Synthetic Biology, 6(7):1140-1149, July 2017
    @ARTICLE{Kozyra2017,
      title = {Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami},
      author = {Kozyra, Jerzy and Ceccarelli, Alessandro and Torelli, Emanuela and Lopiccolo, Annunziata and Gu, Jing-Ying and Fellermann, Harold and Stimming, Ulrich and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1021/acssynbio.6b00271},
      month = jul,
      journal = {ACS Synthetic Biology},
      volume = {6},
      number = {7},
      pages = {1140--1149}
    }
    
  • DOI BibTeX
    N. Lazzarini, J. Bacardit
    RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers
    in BMC Bioinformatics, 18(1), December 2017
    @ARTICLE{Lazzarini2017,
      title = {RGIFE: a ranked guided iterative feature elimination heuristic for the identification of biomarkers},
      author = {Lazzarini, Nicola and Bacardit, Jaume},
      year = 2017,
      doi = {10.1186/s12859-017-1729-2},
      month = dec,
      journal = {BMC Bioinformatics},
      volume = {18},
      number = {1}
    
  • DOI BibTeX
    S. Baron, N. Lazzarini, J. Bacardit
    Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data
    in Applications of Evolutionary Computation, Lecture Notes in Computer Science 10199, p.125-141, 2017
    @INCOLLECTION{Baron2017,
      title = {Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data},
      author = {Baron, Simon and Lazzarini, Nicola and Bacardit, Jaume},
      year = 2017,
      doi = {10.1007/978-3-319-55849-3_9},
      booktitle = {Applications of Evolutionary Computation},
      publisher = {Springer International Publishing},
      volume = {10199},
      series = {Lecture Notes in Computer Science},
      pages = {125--141}
    }
    
  • DOI eprint BibTeX
    J. Kozyra, H. Fellermann, B. Shirt-Ediss, A. Lopiccolo, N. Krasnogor
    Optimizing nucleic acid sequences for a molecular data recorder
    in Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17, p.1145-1152, Berlin, Germany, 2017
    @INPROCEEDINGS{Kozyra2017a,
      title = {Optimizing nucleic acid sequences for a molecular data recorder},
      author = {Kozyra, Jerzy and Fellermann, Harold and Shirt-Ediss, Ben and Lopiccolo, Annunziata and Krasnogor, Natalio},
      year = 2017,
      doi = {10.1145/3071178.3071345},
      booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference on   - GECCO '17},
      pages = {1145--1152},
      address = {Berlin, Germany}
    }
    

2016

  • DOI BibTeX
    M.A. Franco, J. Bacardit
    Large-scale experimental evaluation of GPU strategies for evolutionary machine learning
    in Information Sciences, 330(C):385-402, February 2016
    @ARTICLE{Franco2015,
      title = {Large-scale experimental evaluation of GPU strategies for evolutionary machine learning},
      author = {Franco, María A. and Bacardit, Jaume},
      year = 2016,
      doi = {10.1016/j.ins.2015.10.025},
      month = feb,
      journal = {Information Sciences},
      volume = {330},
      number = {C},
      pages = {385--402}
    }
    
  • DOI eprint code BibTeX
    N. Lazzarini, P. Widera, S. Williamson, R. Heer, N. Krasnogor, J. Bacardit
    Functional networks inference from rule-based machine learning models
    in BioData Mining, 9(1), December 2016
    @ARTICLE{Lazzarini2016,
      title = {Functional networks inference from rule-based machine learning models},
      author = {Lazzarini, Nicola and Widera, Paweł and Williamson, Stuart and Heer, Rakesh and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2016,
      doi = {10.1186/s13040-016-0106-4},
      month = dec,
      journal = {BioData Mining},
      volume = {9},
      number = {1}
    
  • DOI BibTeX
    P.D. Gutiérrez, M. Lastra, J. Bacardit, J.M. Benítez, F. Herrera
    GPU-SME-kNN: Scalable and memory efficient kNN and lazy learning using GPUs
    in Information Sciences, 373(C):165-182, December 2016
    @ARTICLE{Gutierrez2016,
      title = {GPU-SME-kNN: Scalable and memory efficient kNN and lazy learning using GPUs},
      author = {Gutiérrez, Pablo D. and Lastra, Miguel and Bacardit, Jaume and Benítez, José M. and Herrera, Francisco},
      year = 2016,
      doi = {10.1016/j.ins.2016.08.089},
      month = dec,
      journal = {Information Sciences},
      volume = {373},
      number = {C},
      pages = {165--182}
    }
    

2015

  • DOI eprint code BibTeX
    D. Sanassy, P. Widera, N. Krasnogor
    Meta-Stochastic Simulation of Biochemical Models for Systems and Synthetic Biology
    in ACS Synthetic Biology, 4(1):39-47, January 2015
    @ARTICLE{Sanassy2014,
      title = {Meta-Stochastic Simulation of Biochemical Models for Systems and Synthetic Biology},
      author = {Sanassy, Daven and Widera, Paweł and Krasnogor, Natalio},
      year = 2015,
      doi = {10.1021/sb5001406},
      month = jan,
      journal = {ACS Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {39--47}
    }
    
  • DOI BibTeX
    A. Swan, D. Stekel, C. Hodgman, D. Allaway, M. Alqahtani, A. Mobasheri, J. Bacardit
    A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data
    in BMC Genomics, 16(Suppl 1):S2, January 2015
    @ARTICLE{Swan2015,
      title = {A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data},
      author = {Swan, A.L. and Stekel, D.J. and Hodgman, C. and Allaway, D. and Alqahtani, M.H. and Mobasheri, A. and Bacardit, J.},
      year = 2015,
      doi = {10.1186/1471-2164-16-S1-S2},
      month = jan,
      journal = {BMC Genomics},
      volume = {16},
      number = {Suppl 1},
      pages = {S2}
    }
    
  • DOI BibTeX
    F. Eduati, L.M. Mangravite, T. Wang, H. Tang, J.C. Bare, R. Huang, T. Norman, M. Kellen, M.P. Menden, J. Yang, X. Zhan, R. Zhong, G. Xiao, M. Xia, N. Abdo, O. Kosyk, F. Eduati, L.M. Mangravite, J.C. Bare, T. Norman, M. Kellen, M.P. Menden, S. Friend, G. Stolovitzky, A. Dearry, R.R. Tice, R. Huang, M. Xia, A. Simeonov, N. Abdo, O. Kosyk, I. Rusyn, et al.
    Prediction of human population responses to toxic compounds by a collaborative competition
    in Nature Biotechnology, 33(9):933-940, August 2015
    @ARTICLE{Eduati2015,
      title = {Prediction of human population responses to toxic compounds by a collaborative competition},
      author = {Eduati, Federica and Mangravite, Lara M and Wang, Tao and Tang, Hao and Bare, J Christopher and Huang, Ruili and Norman, Thea and Kellen, Mike and Menden, Michael P and Yang, Jichen and Zhan, Xiaowei and Zhong, Rui and Xiao, Guanghua and Xia, Menghang and Abdo, Nour and Kosyk, Oksana and Eduati, Federica and Mangravite, Lara M and Bare, J Christopher and Norman, Thea and Kellen, Mike and Menden, Michael P and Friend, Stephen and Stolovitzky, Gustavo and Dearry, Allen and Tice, Raymond R and Huang, Ruili and Xia, Menghang and Simeonov, Anton and Abdo, Nour and Kosyk, Oksana and Rusyn, Ivan and Wright, Fred A and Wang, Tao and Tang, Hao and Zhan, Xiaowei and Yang, Jichen and Zhong, Rui and Xiao, Guanghua and Xie, Yang and Tang, Hao and Yang, Jichen and Wang, Tao and Xiao, Guanghua and Xie, Yang and Alaimo, Salvatore and Amadoz, Alicia and Ammad-Ud-din, Muhammad and Azencott, Chloé-Agathe and Bacardit, Jaume and Barron, Pelham and Bernard, Elsa and Beyer, Andreas and Bin, Shao and van Bömmel, Alena and Borgwardt, Karsten and Brys, April M and Caffrey, Brian and Chang, Jeffrey and Chang, Jungsoo and Christodoulou, Eleni G and Clément-Ziza, Mathieu and Cohen, Trevor and Cowherd, Marianne and Demeyer, Sofie and Dopazo, Joaquin and Elhard, Joel D and Falcao, Andre O and Ferro, Alfredo and Friedenberg, David A and Giugno, Rosalba and Gong, Yunguo and Gorospe, Jenni W and Granville, Courtney A and Grimm, Dominik and Heinig, Matthias and Hernansaiz, Rosa D and Hochreiter, Sepp and Huang, Liang-Chin and Huska, Matthew and Jiao, Yunlong and Klambauer, Günter and Kuhn, Michael and Kursa, Miron Bartosz and Kutum, Rintu and Lazzarini, Nicola and Lee, Inhan and Leung, Michael K K and Lim, Weng Khong and Liu, Charlie and López, Felipe Llinares and Mammana, Alessandro and Mayr, Andreas and Michoel, Tom and Mongiovì, Misael and Moore, Jonathan D and Narasimhan, Ravi and Opiyo, Stephen O and Pandey, Gaurav and Peabody, Andrea L and Perner, Juliane and Pulvirenti, Alfredo and Rawlik, Konrad and Reinhardt, Susanne and Riffle, Carol G and Ruderfer, Douglas and Sander, Aaron J and Savage, Richard S and Scornet, Erwan and Sebastian-Leon, Patricia and Sharan, Roded and Simon-Gabriel, Carl Johann and Stoven, Veronique and Sun, Jingchun and Tang, Hao and Teixeira, Ana L and Tenesa, Albert and Vert, Jean-Philippe and Vingron, Martin and Wang, Tao and Walter, Thomas and Whalen, Sean and Wiśniewska, Zofia and Wu, Yonghui and Xiao, Guanghua and Xie, Yang and Xu, Hua and Yang, Jichen and Zhan, Xiaowei and Zhang, Shihua and Zhao, Junfei and Zheng, W Jim and Zhong, Rui and Ziwei, Dai and Friend, Stephen and Dearry, Allen and Simeonov, Anton and Tice, Raymond R and Rusyn, Ivan and Wright, Fred A and Stolovitzky, Gustavo and Xie, Yang and Saez-Rodriguez, Julio},
      year = 2015,
      doi = {10.1038/nbt.3299},
      month = aug,
      journal = {Nature Biotechnology},
      volume = {33},
      number = {9},
      pages = {933--940}
    }
    
  • DOI BibTeX
    I. Triguero, S. del Río, V. López, J. Bacardit, J.M. Benítez, F. Herrera
    ROSEFW-RF: The winner algorithm for the ECBDL’14 big data competition: An extremely imbalanced big data bioinformatics problem
    in Knowledge-Based Systems, 87(C):69-79, October 2015
    @ARTICLE{Triguero2015,
      title = {ROSEFW-RF: The winner algorithm for the ECBDL’14 big data competition: An extremely imbalanced big data bioinformatics problem},
      author = {Triguero, Isaac and del Río, Sara and López, Victoria and Bacardit, Jaume and Benítez, José M. and Herrera, Francisco},
      year = 2015,
      doi = {10.1016/j.knosys.2015.05.027},
      month = oct,
      journal = {Knowledge-Based Systems},
      volume = {87},
      number = {C},
      pages = {69--79}
    }
    
  • DOI BibTeX
    M. Martínez-Ballesteros, J. Bacardit, A. Troncoso, J.C. Riquelme
    Enhancing the scalability of a genetic algorithm to discover quantitative association rules in large-scale datasets
    in Integrated Computer-Aided Engineering, 22(1):21-39, 2015
    @ARTICLE{Martinez-Ballesteros2015,
      title = {Enhancing the scalability of a genetic algorithm to discover quantitative association rules in large-scale datasets},
      author = {Martínez-Ballesteros, María and Bacardit, Jaume and Troncoso, Alicia and Riquelme, José C},
      year = 2015,
      doi = {10.3233/ICA-140479},
      journal = {Integrated Computer-Aided Engineering},
      volume = {22},
      number = {1},
      pages = {21--39}
    }
    

2014

  • DOI BibTeX
    A. Garcia-Piquer, A. Fornells, J. Bacardit, A. Orriols-Puig, E. Golobardes
    Large-Scale Experimental Evaluation of Cluster Representations for Multiobjective Evolutionary Clustering
    in IEEE Transactions on Evolutionary Computation, 18(1):36-53, February 2014
    @ARTICLE{Garcia-Piquer2014,
      title = {Large-Scale Experimental Evaluation of Cluster Representations for Multiobjective Evolutionary Clustering},
      author = {Garcia-Piquer, Alvaro and Fornells, Albert and Bacardit, Jaume and Orriols-Puig, Albert and Golobardes, Elisabet},
      year = 2014,
      doi = {10.1109/TEVC.2013.2281513},
      month = feb,
      journal = {IEEE Transactions on Evolutionary Computation},
      volume = {18},
      number = {1},
      pages = {36--53}
    }
    
  • DOI BibTeX
    J.S. Hallinan, O. Gilfellon, G. Misirli, A. Wipat
    Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts
    in 2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, p.1-8, Honolulu, HI, USA, May 2014
    @INPROCEEDINGS{Hallinan2014,
      title = {Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts},
      author = {Hallinan, J. S. and Gilfellon, O. and Misirli, G. and Wipat, A.},
      year = 2014,
      doi = {10.1109/CIBCB.2014.6845520},
      month = may,
      booktitle = {2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology},
      pages = {1--8},
      address = {Honolulu, HI, USA}
    }
    
  • DOI BibTeX
    I. Triguero, D. Peralta, J. Bacardit, S. Garcia, F. Herrera
    A combined MapReduce-windowing two-level parallel scheme for evolutionary prototype generation
    in 2014 IEEE Congress on Evolutionary Computation (CEC), p.3036-3043, Beijing, China, July 2014
    @INPROCEEDINGS{Triguero2014,
      title = {A combined MapReduce-windowing two-level parallel scheme for evolutionary prototype generation},
      author = {Triguero, Isaac and Peralta, Daniel and Bacardit, Jaume and Garcia, Salvador and Herrera, Francisco},
      year = 2014,
      doi = {10.1109/CEC.2014.6900490},
      month = jul,
      booktitle = {2014 IEEE Congress on Evolutionary Computation (CEC)},
      pages = {3036--3043},
      address = {Beijing, China}
    }
    
  • DOI BibTeX
    J. Blakes, O. Raz, U. Feige, J. Bacardit, P. Widera, T. Ben-Yehezkel, E. Shapiro, N. Krasnogor
    Heuristic for Maximizing DNA Reuse in Synthetic DNA Library Assembly
    in ACS Synthetic Biology, 3(8):529-542, August 2014
    @ARTICLE{Blakes2014,
      title = {Heuristic for Maximizing DNA Reuse in Synthetic DNA Library Assembly},
      author = {Blakes, Jonathan and Raz, Ofir and Feige, Uriel and Bacardit, Jaume and Widera, Paweł and Ben-Yehezkel, Tuval and Shapiro, Ehud and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1021/sb400161v},
      month = aug,
      journal = {ACS Synthetic Biology},
      volume = {3},
      number = {8},
      pages = {529--542}
    }
    
  • DOI BibTeX
    J. Bacardit, P. Widera, N. Lazzarini, N. Krasnogor
    Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example
    in Big Data, 2(3):164-176, September 2014
    @ARTICLE{Bacardit2014,
      title = {Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example},
      author = {Bacardit, Jaume and Widera, Paweł and Lazzarini, Nicola and Krasnogor, Natalio},
      year = 2014,
      doi = {10.1089/big.2014.0023},
      month = sep,
      journal = {Big Data},
      volume = {2},
      number = {3},
      pages = {164--176}
    }
    
  • DOI
    I. Contreras, I. Arnaldo, N. Krasnogor, J.I. Hidalgo
    Blind optimisation problem instance classification via enhanced universal similarity metric
    in Memetic Computing, available online since November 2014
  • DOI BibTeX
    M.M. Alkurashi, S.T. May, K. Kong, J. Bacardit, D. Haig, H.M. Elsheikha
    Susceptibility to experimental infection of the invertebrate locusts ( Schistocerca gregaria ) with the apicomplexan parasite Neospora caninum
    in PeerJ, 2:e674, December 2014
    @ARTICLE{Alkurashi2014,
      title = {Susceptibility to experimental infection of the invertebrate locusts ( Schistocerca gregaria ) with the apicomplexan parasite Neospora caninum },
      author = {Alkurashi, Mamdowh M. and May, Sean T. and Kong, Kenny and Bacardit, Jaume and Haig, David and Elsheikha, Hany M.},
      year = 2014,
      doi = {10.7717/peerj.674},
      month = dec,
      journal = {PeerJ},
      volume = {2},
      pages = {e674}
    }
    

2013

  • DOI BibTeX
    J. Bacardit, X. Llorà
    Large-scale data mining using genetics-based machine learning
    in Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 3(1):37-61, January 2013
    @ARTICLE{Bacardit2013,
      title = {Large-scale data mining using genetics-based machine learning},
      author = {Bacardit, Jaume and Llorà, Xavier},
      year = 2013,
      doi = {10.1002/widm.1078},
      month = jan,
      journal = {Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery},
      volume = {3},
      number = {1},
      pages = {37--61}
    }
    
  • DOI BibTeX
    J. Sun, J.M. Garibaldi, N. Krasnogor, Q. Zhang
    An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation
    in Evolutionary Computation, 21(1):107-147, March 2013
    @ARTICLE{Sun2013,
      title = {An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation},
      author = {Sun, J. and Garibaldi, J. M. and Krasnogor, N. and Zhang, Q.},
      year = 2013,
      doi = {10.1162/EVCO_a_00068},
      month = mar,
      journal = {Evolutionary Computation},
      volume = {21},
      number = {1},
      pages = {107--147}
    }
    
  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design
    in Memetic Computing, 5(1):19-33, March 2013
    @ARTICLE{Terrazas2013,
      title = {A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design},
      author = {Terrazas, Germán and Krasnogor, Natalio},
      year = 2013,
      doi = {10.1007/s12293-012-0092-0},
      month = mar,
      journal = {Memetic Computing},
      volume = {5},
      number = {1},
      pages = {19--33}
    }
    
  • DOI BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning
    in Soft Computing, 17(6):953-981, June 2013
    @ARTICLE{Franco2013,
      title = {GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2013,
      doi = {10.1007/s00500-013-1016-8},
      month = jun,
      journal = {Soft Computing},
      volume = {17},
      number = {6},
      pages = {953--981}
    }
    
  • DOI BibTeX
    D.A. Calian, J. Bacardit
    Integrating memetic search into the BioHEL evolutionary learning system for large-scale datasets
    in Memetic Computing, 5(2):95-130, June 2013
    @ARTICLE{Calian2013,
      title = {Integrating memetic search into the BioHEL evolutionary learning system for large-scale datasets},
      author = {Calian, Dan Andrei and Bacardit, Jaume},
      year = 2013,
      doi = {10.1007/s12293-013-0108-4},
      month = jun,
      journal = {Memetic Computing},
      volume = {5},
      number = {2},
      pages = {95--130}
    }
    
  • DOI BibTeX
    I. Arnaldo, I. Contreras, D. Millán-Ruiz, J.I. Hidalgo, N. Krasnogor
    Matching island topologies to problem structure in parallel evolutionary algorithms
    in Soft Computing, 17(7):1209-1225, July 2013
    @ARTICLE{Arnaldo2013,
      title = {Matching island topologies to problem structure in parallel evolutionary algorithms},
      author = {Arnaldo, Ignacio and Contreras, Iván and Millán-Ruiz, David and Hidalgo, J. Ignacio and Krasnogor, Natalio},
      year = 2013,
      doi = {10.1007/s00500-013-0995-9},
      month = jul,
      journal = {Soft Computing},
      volume = {17},
      number = {7},
      pages = {1209--1225}
    }
    
  • DOI BibTeX
    P. Zuliani, A. Platzer, E.M. Clarke
    Bayesian statistical model checking with application to Stateflow/Simulink verification
    in Formal Methods in System Design, 43(2):338-367, October 2013
    @ARTICLE{Zuliani2013,
      title = {Bayesian statistical model checking with application to Stateflow/Simulink verification},
      author = {Zuliani, Paolo and Platzer, André and Clarke, Edmund M.},
      year = 2013,
      doi = {10.1007/s10703-013-0195-3},
      month = oct,
      journal = {Formal Methods in System Design},
      volume = {43},
      number = {2},
      pages = {338--367}
    }
    
  • DOI BibTeX
    A.L. Swan, A. Mobasheri, D. Allaway, S. Liddell, J. Bacardit
    Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology
    in OMICS: A Journal of Integrative Biology, 17(12):595-610, December 2013
    @ARTICLE{Swan2013,
      title = {Application of Machine Learning to Proteomics Data: Classification and Biomarker Identification in Postgenomics Biology},
      author = {Swan, Anna Louise and Mobasheri, Ali and Allaway, David and Liddell, Susan and Bacardit, Jaume},
      year = 2013,
      doi = {10.1089/omi.2013.0017},
      month = dec,
      journal = {OMICS: A Journal of Integrative Biology},
      volume = {17},
      number = {12},
      pages = {595--610}
    }
    
  • DOI BibTeX
    A.L. Swan, K.L. Hillier, J.R. Smith, D. Allaway, S. Liddell, J. Bacardit, A. Mobasheri
    Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning
    in BMC Musculoskeletal Disorders, 14(1):349, 2013
    @ARTICLE{Swan2013a,
      title = {Analysis of mass spectrometry data from the secretome of an explant model of articular cartilage exposed to pro-inflammatory and anti-inflammatory stimuli using machine learning},
      author = {Swan, Anna L and Hillier, Kirsty L and Smith, Julia R and Allaway, David and Liddell, Susan and Bacardit, Jaume and Mobasheri, Ali},
      year = 2013,
      doi = {10.1186/1471-2474-14-349},
      journal = {BMC Musculoskeletal Disorders},
      volume = {14},
      number = {1},
      pages = {349}
    }
    

2012

  • DOI slides data BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Analysing BioHEL using challenging boolean functions
    in Evolutionary Intelligence, 5(2):87-102, June 2012
    @ARTICLE{Franco2012,
      title = {Analysing BioHEL using challenging boolean functions},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2012,
      doi = {10.1007/s12065-012-0080-9},
      month = jun,
      journal = {Evolutionary Intelligence},
      volume = {5},
      number = {2},
      pages = {87--102}
    }
    
  • DOI data BibTeX
    E. Glaab, J. Bacardit, J.M. Garibaldi, N. Krasnogor
    Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data
    in PLoS ONE, 7(7):e39932, July 2012
    @ARTICLE{Glaab2012,
      title = {Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data},
      author = {Glaab, Enrico and Bacardit, Jaume and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2012,
      doi = {10.1371/journal.pone.0039932},
      month = jul,
      journal = {PLoS ONE},
      volume = {7},
      number = {7},
      pages = {e39932}
    }
    
  • DOI BibTeX
    D. Henriques, J.G. Martins, P. Zuliani, A. Platzer, E.M. Clarke
    Statistical Model Checking for Markov Decision Processes
    in 2012 Ninth International Conference on Quantitative Evaluation of Systems, p.84-93, London, United Kingdom, September 2012
    @INPROCEEDINGS{Henriques2012,
      title = {Statistical Model Checking for Markov Decision Processes},
      author = {Henriques, David and Martins, Joao G. and Zuliani, Paolo and Platzer, Andre and Clarke, Edmund M.},
      year = 2012,
      doi = {10.1109/QEST.2012.19},
      month = sep,
      booktitle = {2012 Ninth International Conference on Quantitative Evaluation of Systems},
      pages = {84--93},
      address = {London, United Kingdom}
    }
    
  • DOI eprint slides BibTeX
    J. Bacardit, P. Widera, A. Marquez-Chamorro, F. Divina, J.S. Aguilar-Ruiz, N. Krasnogor
    Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features
    in Bioinformatics, 28(19):2441-2448, October 2012
    @ARTICLE{Bacardit2012,
      title = {Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features},
      author = {Bacardit, J. and Widera, P. and Marquez-Chamorro, A. and Divina, F. and Aguilar-Ruiz, J. S. and Krasnogor, N.},
      year = 2012,
      doi = {10.1093/bioinformatics/bts472},
      month = oct,
      journal = {Bioinformatics},
      volume = {28},
      number = {19},
      pages = {2441--2448}
    }
    
  • DOI BibTeX
    P. Zuliani, C. Baier, E.M. Clarke
    Rare-event verification for stochastic hybrid systems
    in Proceedings of the 15th ACM international conference on Hybrid Systems: Computation and Control - HSCC '12, p.217, Beijing, China, 2012
    @INPROCEEDINGS{Zuliani2012,
      title = {Rare-event verification for stochastic hybrid systems},
      author = {Zuliani, Paolo and Baier, Christel and Clarke, Edmund M.},
      year = 2012,
      doi = {10.1145/2185632.2185665},
      booktitle = {Proceedings of the 15th ACM international conference on Hybrid Systems: Computation and Control - HSCC '12},
      pages = {217},
      address = {Beijing, China}
    }
    
  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2011), Studies in Computational Intelligence 387, p.73-84, 2012
    @INCOLLECTION{Terrazas2012,
      title = {Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles},
      author = {Terrazas, Germán and Krasnogor, Natalio},
      year = 2012,
      doi = {10.1007/978-3-642-24094-2_5},
      booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2011)},
      publisher = {Springer Berlin Heidelberg},
      volume = {387},
      series = {Studies in Computational Intelligence},
      pages = {73--84}
    }
    
  • DOI slides code BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Post-processing operators for decision lists
    in Proceedings of the fourteenth international conference on Genetic and evolutionary computation conference - GECCO '12, p.847, Philadelphia, Pennsylvania, USA, 2012
    @INPROCEEDINGS{Franco2012a,
      title = {Post-processing operators for decision lists},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2012,
      doi = {10.1145/2330163.2330281},
      booktitle = {Proceedings of the fourteenth international conference on Genetic and evolutionary computation conference - GECCO '12},
      pages = {847},
      address = {Philadelphia, Pennsylvania, USA}
    }
    

2011

  • DOI BibTeX
    Y. Wang, A. Komuravelli, P. Zuliani, E.M. Clarke
    Analog circuit verification by statistical model checking
    in 16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011), p.1-6, Yokohama, Japan, January 2011
    @INPROCEEDINGS{Wang2011,
      title = {Analog circuit verification by statistical model checking},
      author = {Wang, Ying-Chih and Komuravelli, Anvesh and Zuliani, Paolo and Clarke, Edmund M.},
      year = 2011,
      doi = {10.1109/ASPDAC.2011.5722168},
      month = jan,
      booktitle = {16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011)},
      pages = {1--6},
      address = {Yokohama, Japan}
    }
    
  • DOI BibTeX
    G.W. Bassel, E. Glaab, J. Marquez, M.J. Holdsworth, J. Bacardit
    Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets
    in THE PLANT CELL ONLINE, 23(9):3101-3116, September 2011
    @ARTICLE{Bassel2011,
      title = {Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets},
      author = {Bassel, G. W. and Glaab, E. and Marquez, J. and Holdsworth, M. J. and Bacardit, J.},
      year = 2011,
      doi = {10.1105/tpc.111.088153},
      month = sep,
      journal = {THE PLANT CELL ONLINE},
      volume = {23},
      number = {9},
      pages = {3101--3116}
    }
    
  • DOI slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding
    in Proceedings of the 13th annual conference on Genetic and evolutionary computation - GECCO '11, p.1291, Dublin, Ireland, 2011
    Best Paper Award in GBML track
    @INPROCEEDINGS{Franco2011,
      title = {Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2011,
      doi = {10.1145/2001576.2001750},
      note = {Best Paper Award in GBML track},
      booktitle = {Proceedings of the 13th annual conference on Genetic and evolutionary computation - GECCO '11},
      pages = {1291},
      address = {Dublin, Ireland}
    }
    
  • DOI BibTeX
    R.A.J. Woolley, J. Stirling, A. Radocea, N. Krasnogor, P. Moriarty
    Automated probe microscopy via evolutionary optimization at the atomic scale
    in Applied Physics Letters, 98(25):253104, 2011
    @ARTICLE{Woolley2011,
      title = {Automated probe microscopy via evolutionary optimization at the atomic scale},
      author = {Woolley, Richard A. J. and Stirling, Julian and Radocea, Adrian and Krasnogor, Natalio and Moriarty, Philip},
      year = 2011,
      doi = {10.1063/1.3600662},
      journal = {Applied Physics Letters},
      volume = {98},
      number = {25},
      pages = {253104}
    }
    
  • DOI BibTeX
    E.M. Clarke, P. Zuliani
    Statistical Model Checking for Cyber-Physical Systems
    in Automated Technology for Verification and Analysis, Lecture Notes in Computer Science 6996, p.1-12, 2011
    @INCOLLECTION{Clarke2011,
      title = {Statistical Model Checking for Cyber-Physical Systems},
      author = {Clarke, Edmund M. and Zuliani, Paolo},
      year = 2011,
      doi = {10.1007/978-3-642-24372-1_1},
      booktitle = {Automated Technology for Verification and Analysis},
      publisher = {Springer Berlin Heidelberg},
      volume = {6996},
      series = {Lecture Notes in Computer Science},
      pages = {1--12}
    }
    
  • DOI BibTeX
    H.L.S. Younes, E.M. Clarke, P. Zuliani
    Statistical Verification of Probabilistic Properties with Unbounded Until
    in Formal Methods: Foundations and Applications, Lecture Notes in Computer Science 6527, p.144-160, 2011
    @INCOLLECTION{Younes2011,
      title = {Statistical Verification of Probabilistic Properties with Unbounded Until},
      author = {Younes, Håkan L. S. and Clarke, Edmund M. and Zuliani, Paolo},
      year = 2011,
      doi = {10.1007/978-3-642-19829-8_10},
      booktitle = {Formal Methods: Foundations and Applications},
      publisher = {Springer Berlin Heidelberg},
      volume = {6527},
      series = {Lecture Notes in Computer Science},
      pages = {144--160}
    }
    

2010

  • DOI BibTeX
    H. Cao, F.J. Romero-Campero, S. Heeb, M. Cámara, N. Krasnogor
    Evolving cell models for systems and synthetic biology
    in Systems and Synthetic Biology, 4(1):55-84, March 2010
    @ARTICLE{Cao2010,
      title = {Evolving cell models for systems and synthetic biology},
      author = {Cao, Hongqing and Romero-Campero, Francisco J. and Heeb, Stephan and Cámara, Miguel and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/s11693-009-9050-7},
      month = mar,
      journal = {Systems and Synthetic Biology},
      volume = {4},
      number = {1},
      pages = {55--84}
    }
    
  • DOI BibTeX
    R.E. Smith, M.K. Jiang, J. Bacardit, M. Stout, N. Krasnogor, J.D. Hirst
    A learning classifier system with mutual-information-based fitness
    in Evolutionary Intelligence, 3(1):31-50, March 2010
    @ARTICLE{Smith2010,
      title = {A learning classifier system with mutual-information-based fitness},
      author = {Smith, Robert Elliott and Jiang, Max Kun and Bacardit, Jaume and Stout, Michael and Krasnogor, Natalio and Hirst, Jonathan D.},
      year = 2010,
      doi = {10.1007/s12065-010-0037-9},
      month = mar,
      journal = {Evolutionary Intelligence},
      volume = {3},
      number = {1},
      pages = {31--50}
    }
    
  • DOI eprint data BibTeX
    P. Widera, J.M. Garibaldi, N. Krasnogor
    GP challenge: evolving energy function for protein structure prediction
    in Genetic Programming and Evolvable Machines, 11(1):61-88, March 2010
    @ARTICLE{Widera2010,
      title = {GP challenge: evolving energy function for protein structure prediction},
      author = {Widera, Paweł and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/s10710-009-9087-0},
      month = mar,
      journal = {Genetic Programming and Evolvable Machines},
      volume = {11},
      number = {1},
      pages = {61--88}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Towards the Design of Heuristics by Means of Self-Assembly
    in Electronic Proceedings in Theoretical Computer Science, 26:135-146, June 2010
    @ARTICLE{Terrazas2010a,
      title = {Towards the Design of Heuristics by Means of Self-Assembly},
      author = {Terrazas, German and Landa-Silva, Dario and Krasnogor, Natalio},
      year = 2010,
      doi = {10.4204/EPTCS.26.13},
      month = jun,
      journal = {Electronic Proceedings in Theoretical Computer Science},
      volume = {26},
      pages = {135--146}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor
    Grammatical rules for the automated construction of heuristics
    in IEEE Congress on Evolutionary Computation, p.1-8, Barcelona, Spain, July 2010
    @INPROCEEDINGS{Terrazas2010,
      title = {Grammatical rules for the automated construction of heuristics},
      author = {Terrazas, German and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1109/CEC.2010.5586192},
      month = jul,
      booktitle = {IEEE Congress on Evolutionary Computation},
      pages = {1--8},
      address = {Barcelona, Spain}
    }
    
  • DOI BibTeX
    J.S. Hallinan, G. Misirli, A. Wipat
    Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits
    in 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology, p.768-774, Buenos Aires, August 2010
    @INPROCEEDINGS{Hallinan2010,
      title = {Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits},
      author = {Hallinan, J S and Misirli, G and Wipat, A},
      year = 2010,
      doi = {10.1109/IEMBS.2010.5626353},
      month = aug,
      booktitle = {2010 Annual International Conference of the IEEE Engineering in Medicine and Biology},
      pages = {768--774},
      address = {Buenos Aires}
    }
    
  • DOI BibTeX
    P. Zuliani, A. Platzer, E.M. Clarke
    Bayesian statistical model checking with application to Simulink/Stateflow verification
    in Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10, p.243, Stockholm, Sweden, 2010
    @INPROCEEDINGS{Zuliani2010,
      title = {Bayesian statistical model checking with application to Simulink/Stateflow verification},
      author = {Zuliani, Paolo and Platzer, André and Clarke, Edmund M.},
      year = 2010,
      doi = {10.1145/1755952.1755987},
      booktitle = {Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10},
      pages = {243},
      address = {Stockholm, Sweden}
    }
    
  • DOI eprint BibTeX
    P. Widera, J. Bacardit, N. Krasnogor, C. García-Martínez, M. Lozano
    Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology
    in Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10, p.1991, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Widera2010a,
      title = {Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology},
      author = {Widera, Paweł and Bacardit, Jaume and Krasnogor, Natalio and García-Martínez, Carlos and Lozano, Manuel},
      year = 2010,
      doi = {10.1145/1830761.1830842},
      booktitle = {Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10},
      pages = {1991},
      address = {Portland, Oregon, USA}
    }
    
  • DOI eprint slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Speeding up the evaluation of evolutionary learning systems using GPGPUs
    in Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10, p.1039, Portland, Oregon, USA, 2010
    Best Paper Award in the GBML track
    @INPROCEEDINGS{Franco2010,
      title = {Speeding up the evaluation of evolutionary learning systems using GPGPUs},
      author = {Franco, María A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2010,
      doi = {10.1145/1830483.1830672},
      note = {Best Paper Award in the GBML track},
      booktitle = {Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10},
      pages = {1039},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    J. Bacardit, W. Browne, J. Drugowitsch, E. Bernadó-Mansilla, M.V. Butz
    Learning Classifier Systems
    Lecture Notes in Computer Science 6471, Springer Berlin Heidelberg, 2010
    @BOOK{Bacardit2010,
      title = {Learning Classifier Systems},
      author = {Bacardit, Jaume and Browne, Will and Drugowitsch, Jan and Bernadó-Mansilla, Ester and Butz, Martin V.},
      year = 2010,
      doi = {10.1007/978-3-642-17508-4},
      publisher = {Springer Berlin Heidelberg},
      volume = {6471},
      series = {Lecture Notes in Computer Science}
    }
    
  • DOI slides BibTeX
    M.A. Franco, N. Krasnogor, J. Bacardit
    Analysing bioHEL using challenging boolean functions
    in Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10, p.1855, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Franco2010a,
      title = {Analysing bioHEL using challenging boolean functions},
      author = {Franco, Maria A. and Krasnogor, Natalio and Bacardit, Jaume},
      year = 2010,
      doi = {10.1145/1830761.1830817},
      booktitle = {Proceedings of the 12th annual conference comp on Genetic and evolutionary computation - GECCO '10},
      pages = {1855},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    C. García-Martínez, C. Lima, J. Twycross, N. Krasnogor, M. Lozano
    P system model optimisation by means of evolutionary based search algorithms
    in Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10, p.187, Portland, Oregon, USA, 2010
    @INPROCEEDINGS{Garcia-Martinez2010,
      title = {P system model optimisation by means of evolutionary based search algorithms},
      author = {García-Martínez, Carlos and Lima, Claudio and Twycross, Jamie and Krasnogor, Natalio and Lozano, Manuel},
      year = 2010,
      doi = {10.1145/1830483.1830517},
      booktitle = {Proceedings of the 12th annual conference on Genetic and evolutionary computation - GECCO '10},
      pages = {187},
      address = {Portland, Oregon, USA}
    }
    
  • DOI BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2010), Studies in Computational Intelligence 284, p.89-100, 2010
    @INCOLLECTION{Terrazas2010b,
      title = {Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics},
      author = {Terrazas, Germán and Landa-Silva, Dario and Krasnogor, Natalio},
      year = 2010,
      doi = {10.1007/978-3-642-12538-6_8},
      booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2010)},
      publisher = {Springer Berlin Heidelberg},
      volume = {284},
      series = {Studies in Computational Intelligence},
      pages = {89--100}
    }
    

2009

  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, R.E. Smith, N. Krasnogor
    Prediction of topological contacts in proteins using learning classifier systems
    in Soft Computing, 13(3):245-258, February 2009
    @ARTICLE{Stout2009,
      title = {Prediction of topological contacts in proteins using learning classifier systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Smith, Robert E. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/s00500-008-0318-8},
      month = feb,
      journal = {Soft Computing},
      volume = {13},
      number = {3},
      pages = {245--258}
    }
    
  • DOI BibTeX
    J. Alcalá-Fdez, L. Sánchez, S. García, M.J. del Jesus, S. Ventura, J.M. Garrell, J. Otero, C. Romero, J. Bacardit, V.M. Rivas, J.C. Fernández, F. Herrera
    KEEL: a software tool to assess evolutionary algorithms for data mining problems
    in Soft Computing, 13(3):307-318, February 2009
    @ARTICLE{Alcala-Fdez2009,
      title = {KEEL: a software tool to assess evolutionary algorithms for data mining problems},
      author = {Alcalá-Fdez, J. and Sánchez, L. and García, S. and del Jesus, M. J. and Ventura, S. and Garrell, J. M. and Otero, J. and Romero, C. and Bacardit, J. and Rivas, V. M. and Fernández, J. C. and Herrera, F.},
      year = 2009,
      doi = {10.1007/s00500-008-0323-y},
      month = feb,
      journal = {Soft Computing},
      volume = {13},
      number = {3},
      pages = {307--318}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, E.K. Burke, N. Krasnogor
    Improving the scalability of rule-based evolutionary learning
    in Memetic Computing, 1(1):55-67, March 2009
    @ARTICLE{Bacardit2009,
      title = {Improving the scalability of rule-based evolutionary learning},
      author = {Bacardit, Jaume and Burke, Edmund K. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/s12293-008-0005-4},
      month = mar,
      journal = {Memetic Computing},
      volume = {1},
      number = {1},
      pages = {55--67}
    }
    
  • DOI eprint BibTeX
    L. Fiaschi, J.M. Garibaldi, N. Krasnogora
    A framework for the application of decision trees to the analysis of SNPs data
    in 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, p.106-113, Nashville, TN, USA, March 2009
    @INPROCEEDINGS{Fiaschi2009,
      title = {A framework for the application of decision trees to the analysis of SNPs data},
      author = {Fiaschi, Linda and Garibaldi, Jonathan M. and Krasnogora, Natalio},
      year = 2009,
      doi = {10.1109/CIBCB.2009.4925715},
      month = mar,
      booktitle = {2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology},
      pages = {106--113},
      address = {Nashville, TN, USA}
    }
    
  • DOI eprint BibTeX
    P. Widera, J.M. Garibaldi, N. Krasnogor
    Evolutionary design of the energy function for protein structure prediction
    in 2009 IEEE Congress on Evolutionary Computation, p.1305-1312, Trondheim, Norway, May 2009
    @INPROCEEDINGS{Widera2009,
      title = {Evolutionary design of the energy function for protein structure prediction},
      author = {Widera, Pawel and Garibaldi, Jonathan M. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1109/CEC.2009.4983095},
      month = may,
      booktitle = {2009 IEEE Congress on Evolutionary Computation},
      pages = {1305--1312},
      address = {Trondheim, Norway}
    }
    
  • DOI BibTeX
    F.J. Romero-Campero, J. Twycross, M. Cámara, M. Bennett, M. Gheorghe, N. Krasnogor
    Modular Assembly Of Cell Systems Biology Models Using P Systems
    in International Journal of Foundations of Computer Science, 20(03):427-442, June 2009
    @ARTICLE{Romero-Campero2009,
      title = {Modular Assembly Of Cell Systems Biology Models Using P Systems},
      author = {Romero-Campero, Francisco J. and Twycross, Jamie and Cámara, Miguel and Bennett, Malcolm and Gheorghe, Marian and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1142/S0129054109006668},
      month = jun,
      journal = {International Journal of Foundations of Computer Science},
      volume = {20},
      number = {03},
      pages = {427--442}
    }
    
  • DOI BibTeX
    N.Q. Huy, O.Y. Soon, L.M. Hiot, N. Krasnogor
    Adaptive Cellular Memetic Algorithms
    in Evolutionary Computation, 17(2):231-256, June 2009
    @ARTICLE{Huy2009,
      title = {Adaptive Cellular Memetic Algorithms},
      author = {Huy, Nguyen Quang and Soon, Ong Yew and Hiot, Lim Meng and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1162/evco.2009.17.2.231},
      month = jun,
      journal = {Evolutionary Computation},
      volume = {17},
      number = {2},
      pages = {231--256}
    }
    
  • DOI eprint BibTeX
    L. Li, J.M. Garibaldi, N. Krasnogor
    Automated self-assembly programming paradigm: The impact of network topology
    in International Journal of Intelligent Systems, 24(7):793-817, July 2009
    @ARTICLE{Li2009,
      title = {Automated self-assembly programming paradigm: The impact of network topology},
      author = {Li, Lin and Garibaldi, Jonathan M and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1002/int.20361},
      month = jul,
      journal = {International Journal of Intelligent Systems},
      volume = {24},
      number = {7},
      pages = {793--817}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems
    in Evolutionary Computation, 17(3):307-342, September 2009
    @ARTICLE{Bacardit2009c,
      title = {Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1162/evco.2009.17.3.307},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {17},
      number = {3},
      pages = {307--342}
    }
    
  • DOI BibTeX
    F.J. Romero-Campero, N. Krasnogor
    An Approach to the Engineering of Cellular Models Based on P Systems
    in Mathematical Theory and Computational Practice, Lecture Notes in Computer Science 5635, p.430-436, 2009
    @INCOLLECTION{Romero-Campero2009b,
      title = {An Approach to the Engineering of Cellular Models Based on P Systems},
      author = {Romero-Campero, Francisco J. and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1007/978-3-642-03073-4_44},
      booktitle = {Mathematical Theory and Computational Practice},
      publisher = {Springer Berlin Heidelberg},
      volume = {5635},
      series = {Lecture Notes in Computer Science},
      pages = {430--436}
    }
    
  • DOI BibTeX
    E. Glaab, J.M. Garibaldi, N. Krasnogor
    ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
    in BMC Bioinformatics, 10(1):358, 2009
    @ARTICLE{Glaab2009,
      title = {ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization},
      author = {Glaab, Enrico and Garibaldi, Jonathan M and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1186/1471-2105-10-358},
      journal = {BMC Bioinformatics},
      volume = {10},
      number = {1},
      pages = {358}
    }
    
  • DOI BibTeX
    N. Krasnogor, M.B. Melián-Batista, J.A.M. Pérez, J.M. Moreno-Vega, D.A. Pelta
    Nature Inspired Cooperative Strategies for Optimization (NICSO 2008)
    Studies in Computational Intelligence 236, Springer Berlin Heidelberg, 2009
    @BOOK{Krasnogor2009,
      title = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2008)},
      author = {Krasnogor, Natalio and Melián-Batista, María Belén and Pérez, José Andrés Moreno and Moreno-Vega, J. Marcos and Pelta, David Alejandro},
      year = 2009,
      doi = {10.1007/978-3-642-03211-0},
      publisher = {Springer Berlin Heidelberg},
      volume = {236},
      series = {Studies in Computational Intelligence}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    A mixed discrete-continuous attribute list representation for large scale classification domains
    in Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09, p.1155, Montreal, Québec, Canada, 2009
    @INPROCEEDINGS{Bacardit2009b,
      title = {A mixed discrete-continuous attribute list representation for large scale classification domains},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1145/1569901.1570057},
      booktitle = {Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09},
      pages = {1155},
      address = {Montreal, Québec, Canada}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, A. Valencia, R.E. Smith, N. Krasnogor
    Automated Alphabet Reduction for Protein Datasets
    in BMC Bioinformatics, 10(1):6, 2009
    @ARTICLE{Bacardit2009a,
      title = {Automated Alphabet Reduction for Protein Datasets},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D and Valencia, Alfonso and Smith, Robert E and Krasnogor, Natalio},
      year = 2009,
      doi = {10.1186/1471-2105-10-6},
      journal = {BMC Bioinformatics},
      volume = {10},
      number = {1},
      pages = {6}
    }
    

2008

  • DOI BibTeX
    N. Krasnogor, J. Smith
    Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective
    in Journal of Mathematical Modelling and Algorithms, 7(1):3-24, March 2008
    @ARTICLE{Krasnogor2008,
      title = {Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective},
      author = {Krasnogor, Natalio and Smith, Jim},
      year = 2008,
      doi = {10.1007/s10852-007-9070-9},
      month = mar,
      journal = {Journal of Mathematical Modelling and Algorithms},
      volume = {7},
      number = {1},
      pages = {3--24}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, N. Krasnogor
    Prediction of recursive convex hull class assignments for protein residues
    in Bioinformatics, 24(7):916-923, April 2008
    @ARTICLE{Stout2008,
      title = {Prediction of recursive convex hull class assignments for protein residues},
      author = {Stout, M. and Bacardit, J. and Hirst, J. D. and Krasnogor, N.},
      year = 2008,
      doi = {10.1093/bioinformatics/btn050},
      month = apr,
      journal = {Bioinformatics},
      volume = {24},
      number = {7},
      pages = {916--923}
    }
    
  • DOI eprint BibTeX
    M. Oakley, D. Barthel, Y. Bykov, J. Garibaldi, E. Burke, N. Krasnogor, J. Hirst
    Search Strategies in Structural Bioinformatics
    in Current Protein & Peptide Science, 9(3):260-274, June 2008
    @ARTICLE{Oakley2008,
      title = {Search Strategies in Structural Bioinformatics},
      author = {Oakley, Mark and Barthel, Daniel and Bykov, Yuri and Garibaldi, Jonathan and Burke, Edmund and Krasnogor, Natalio and Hirst, Jonathan},
      year = 2008,
      doi = {10.2174/138920308784534032},
      month = jun,
      journal = {Current Protein & Peptide Science},
      volume = {9},
      number = {3},
      pages = {260--274}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, N. Krasnogor
    Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System
    in Learning Classifier Systems, Lecture Notes in Computer Science 4998, p.255-268, 2008
    @INCOLLECTION{Bacardit2008b,
      title = {Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4_15},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science},
      pages = {255--268}
    }
    
  • DOI BibTeX
    J. Bacardit, N. Krasnogor
    Fast rule representation for continuous attributes in genetics-based machine learning
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.1421, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Bacardit2008,
      title = {Fast rule representation for continuous attributes in genetics-based machine learning},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1145/1389095.1389369},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {1421},
      address = {Atlanta, GA, USA}
    }
    
  • DOI eprint BibTeX
    F.J. Romero-Campero, H. Cao, M. Camara, N. Krasnogor
    Structure and parameter estimation for cell systems biology models
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.331, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Romero-Campero2008,
      title = {Structure and parameter estimation for cell systems biology models},
      author = {Romero-Campero, Francisco J. and Cao, Hongqing and Camara, Miguel and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1145/1389095.1389153},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {331},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    J. Smaldon, J. Blakes, N. Krasnogor, D. Lancet
    A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.249, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Smaldon2008,
      title = {A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics},
      author = {Smaldon, James and Blakes, Jonathan and Krasnogor, Natalio and Lancet, Doron},
      year = 2008,
      doi = {10.1145/1389095.1389134},
      booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
      pages = {249},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    M. Tabacman, N. Krasnogor, J. Bacardit, I. Loiseau
    Learning classifier systems for optimisation problems
    in Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation - GECCO '08, p.2039, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Tabacman2008,
      title = {Learning classifier systems for optimisation problems},
      author = {Tabacman, Maximiliano and Krasnogor, Natalio and Bacardit, Jaume and Loiseau, Irene},
      year = 2008,
      doi = {10.1145/1388969.1389018},
      booktitle = {Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation - GECCO '08},
      pages = {2039},
      address = {Atlanta, GA, USA}
    }
    
  • DOI BibTeX
    J. Bacardit, E. Bernadó-Mansilla, M.V. Butz
    Learning Classifier Systems: Looking Back and Glimpsing Ahead
    in Learning Classifier Systems, Lecture Notes in Computer Science 4998, p.1-21, 2008
    @INCOLLECTION{Bacardit2008d,
      title = {Learning Classifier Systems: Looking Back and Glimpsing Ahead},
      author = {Bacardit, Jaume and Bernadó-Mansilla, Ester and Butz, Martin V.},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4_1},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science},
      pages = {1--21}
    }
    
  • DOI BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, N. Krasnogor
    Data Mining in Proteomics with Learning Classifier Systems
    in Learning Classifier Systems in Data Mining, Studies in Computational Intelligence 125, p.17-46, 2008
    @INCOLLECTION{Bacardit2008a,
      title = {Data Mining in Proteomics with Learning Classifier Systems},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D. and Krasnogor, Natalio},
      year = 2008,
      doi = {10.1007/978-3-540-78979-6_2},
      booktitle = {Learning Classifier Systems in Data Mining},
      publisher = {Springer Berlin Heidelberg},
      volume = {125},
      series = {Studies in Computational Intelligence},
      pages = {17--46}
    }
    
  • DOI BibTeX
    N. Krasnogor, G. Nicosia, M. Pavone, D. Pelta
    Nature Inspired Cooperative Strategies for Optimization (NICSO 2007)
    Studies in Computational Intelligence 129, Springer Berlin Heidelberg, 2008
    @BOOK{Krasnogor2008a,
      title = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2007)},
      author = {Krasnogor, Natalio and Nicosia, Giuseppe and Pavone, Mario and Pelta, David},
      year = 2008,
      doi = {10.1007/978-3-540-78987-1},
      publisher = {Springer Berlin Heidelberg},
      volume = {129},
      series = {Studies in Computational Intelligence}
    }
    
  • DOI BibTeX
    J. Bacardit, E. Bernadó-Mansilla, M.V. Butz, T. Kovacs, X. Llorà, K. Takadama
    Learning Classifier Systems
    Lecture Notes in Computer Science 4998, Springer Berlin Heidelberg, 2008
    @BOOK{Bacardit2008c,
      title = {Learning Classifier Systems},
      author = {Bacardit, Jaume and Bernadó-Mansilla, Ester and Butz, Martin V. and Kovacs, Tim and Llorà, Xavier and Takadama, Keiki},
      year = 2008,
      doi = {10.1007/978-3-540-88138-4},
      publisher = {Springer Berlin Heidelberg},
      volume = {4998},
      series = {Lecture Notes in Computer Science}
    }
    

2007

  • DOI BibTeX
    Y. Ong, N. Krasnogor, H. Ishibuchi
    Special Issue on Memetic Algorithms
    in IEEE Transactions on Systems, Man and Cybernetics, Part B (Cybernetics), 37(1):2-5, February 2007
    @ARTICLE{Ong2007,
      title = {Special Issue on Memetic Algorithms},
      author = {Ong, Yew-Soon and Krasnogor, Natalio and Ishibuchi, Hisao},
      year = 2007,
      doi = {10.1109/TSMCB.2006.883274},
      month = feb,
      journal = {IEEE Transactions on Systems, Man and Cybernetics, Part B (Cybernetics)},
      volume = {37},
      number = {1},
      pages = {2--5}
    }
    
  • DOI eprint BibTeX
    P. Siepmann, C.P. Martin, I. Vancea, P.J. Moriarty, N. Krasnogor
    A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems
    in Nano Letters, 7(7):1985-1990, July 2007
    @ARTICLE{Siepmann2007,
      title = {A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems},
      author = {Siepmann, Peter and Martin, Christopher P. and Vancea, Ioan and Moriarty, Philip J. and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1021/nl070773m},
      month = jul,
      journal = {Nano Letters},
      volume = {7},
      number = {7},
      pages = {1985--1990}
    }
    
  • DOI BibTeX
    G. Terrazas, M. Gheorghe, G. Kendall, N. Krasnogor
    Evolving tiles for automated self-assembly design
    in 2007 IEEE Congress on Evolutionary Computation, p.2001-2008, Singapore, September 2007
    @INPROCEEDINGS{Terrazas2007,
      title = {Evolving tiles for automated self-assembly design},
      author = {Terrazas, German and Gheorghe, Marian and Kendall, Graham and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1109/CEC.2007.4424719},
      month = sep,
      booktitle = {2007 IEEE Congress on Evolutionary Computation},
      pages = {2001--2008},
      address = {Singapore}
    }
    
  • DOI eprint BibTeX
    Q.H. Nguyen, Y.S. Ong, N. Krasnogor
    A study on the design issues of Memetic Algorithm
    in 2007 IEEE Congress on Evolutionary Computation, p.2390-2397, Singapore, September 2007
    @INPROCEEDINGS{Nguyen2007,
      title = {A study on the design issues of Memetic Algorithm},
      author = {Nguyen, Q. H. and Ong, Y. S. and Krasnogor, N.},
      year = 2007,
      doi = {10.1109/CEC.2007.4424770},
      month = sep,
      booktitle = {2007 IEEE Congress on Evolutionary Computation},
      pages = {2390--2397},
      address = {Singapore}
    }
    
  • DOI eprint BibTeX
    J. Bacardit, M. Stout, J.D. Hirst, K. Sastry, X. Llorà, N. Krasnogor
    Automated alphabet reduction method with evolutionary algorithms for protein structure prediction
    in Proceedings of the 9th annual conference on Genetic and evolutionary computation - GECCO '07, p.346, London, England, 2007
    @INPROCEEDINGS{Bacardit2007,
      title = {Automated alphabet reduction method with evolutionary algorithms for protein structure prediction},
      author = {Bacardit, Jaume and Stout, Michael and Hirst, Jonathan D. and Sastry, Kumara and Llorà, Xavier and Krasnogor, Natalio},
      year = 2007,
      doi = {10.1145/1276958.1277033},
      booktitle = {Proceedings of the 9th annual conference on Genetic and evolutionary computation  - GECCO '07},
      pages = {346},
      address = {London, England}
    }
    
  • DOI BibTeX
    J. Bacardit, D.E. Goldberg, M.V. Butz
    Improving the Performance of a Pittsburgh Learning Classifier System Using a Default Rule
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.291-307, 2007
    @INCOLLECTION{Bacardit2007a,
      title = {Improving the Performance of a Pittsburgh Learning Classifier System Using a Default Rule},
      author = {Bacardit, Jaume and Goldberg, David E. and Butz, Martin V.},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_20},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {291--307}
    }
    
  • DOI BibTeX
    J. Bacardit, M.V. Butz
    Data Mining in Learning Classifier Systems: Comparing XCS with GAssist
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.282-290, 2007
    @INCOLLECTION{Bacardit2007b,
      title = {Data Mining in Learning Classifier Systems: Comparing XCS with GAssist},
      author = {Bacardit, Jaume and Butz, Martin V.},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_19},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {282--290}
    }
    
  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Bloat Control and Generalization Pressure Using the Minimum Description Length Principle for a Pittsburgh Approach Learning Classifier System
    in Learning Classifier Systems, Lecture Notes in Computer Science 4399, p.59-79, 2007
    @INCOLLECTION{Bacardit2007c,
      title = {Bloat Control and Generalization Pressure Using the Minimum Description Length Principle for a Pittsburgh Approach Learning Classifier System},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2007,
      doi = {10.1007/978-3-540-71231-2_5},
      booktitle = {Learning Classifier Systems},
      publisher = {Springer Berlin Heidelberg},
      volume = {4399},
      series = {Lecture Notes in Computer Science},
      pages = {59--79}
    }
    
  • DOI eprint BibTeX
    V. Cutello, N. Krasnogor, G. Nicosia, M. Pavone
    Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization
    in Adaptive and Natural Computing Algorithms, Lecture Notes in Computer Science 4431, p.93-101, 2007
    @INCOLLECTION{Cutello2007,
      title = {Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization},
      author = {Cutello, Vincenzo and Krasnogor, Natalio and Nicosia, Giuseppe and Pavone, Mario},
      year = 2007,
      doi = {10.1007/978-3-540-71618-1_11},
      booktitle = {Adaptive and Natural Computing Algorithms},
      publisher = {Springer Berlin Heidelberg},
      volume = {4431},
      series = {Lecture Notes in Computer Science},
      pages = {93--101}
    }
    

2006

  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, J. Blazewicz, N. Krasnogor
    Prediction Of Residue Exposure And Contact Number For Simplified Hp Lattice Model Proteins Using Learning Classifier Systems
    in Applied Artificial Intelligence, p.601-608, Genova, Italy, July 2006
    @INPROCEEDINGS{Stout2006,
      title = {Prediction Of Residue Exposure And Contact Number For Simplified Hp Lattice Model Proteins Using Learning Classifier Systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Blazewicz, Jacek and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1142/9789812774118_0085},
      month = jul,
      booktitle = {Applied Artificial Intelligence},
      pages = {601--608},
      address = {Genova, Italy}
    }
    
  • DOI BibTeX
    J. Bacardit, M. Stout, N. Krasnogor, J.D. Hirst, J. Blazewicz
    Coordination number prediction using learning classifier systems
    in Proceedings of the 8th annual conference on Genetic and evolutionary computation - GECCO '06, p.247, Seattle, Washington, USA, 2006
    @INPROCEEDINGS{Bacardit2006,
      title = {Coordination number prediction using learning classifier systems},
      author = {Bacardit, Jaume and Stout, Michael and Krasnogor, Natalio and Hirst, Jonathan D. and Blazewicz, Jacek},
      year = 2006,
      doi = {10.1145/1143997.1144041},
      booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation  - GECCO '06},
      pages = {247},
      address = {Seattle, Washington, USA}
    }
    
  • DOI BibTeX
    M. Stout, J. Bacardit, J.D. Hirst, N. Krasnogor, J. Blazewicz
    From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems
    in Applications of Evolutionary Computing, Lecture Notes in Computer Science 3907, p.208-220, 2006
    @INCOLLECTION{Stout2006a,
      title = {From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems},
      author = {Stout, Michael and Bacardit, Jaume and Hirst, Jonathan D. and Krasnogor, Natalio and Blazewicz, Jacek},
      year = 2006,
      doi = {10.1007/11732242_19},
      booktitle = {Applications of Evolutionary Computing},
      publisher = {Springer Berlin Heidelberg},
      volume = {3907},
      series = {Lecture Notes in Computer Science},
      pages = {208--220}
    }
    
  • DOI BibTeX
    G. Ochoa, G. Escuela, N. Krasnogor
    Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.247-258, 2006
    @INCOLLECTION{Ochoa2006,
      title = {Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding},
      author = {Ochoa, Gabriela and Escuela, Gabi and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1007/11740698_22},
      booktitle = {Artificial Evolution},
      publisher = {Springer Berlin Heidelberg},
      volume = {3871},
      series = {Lecture Notes in Computer Science},
      pages = {247--258}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, G. Terrazas, D.A. Pelta, G. Ochoa
    A Critical View of the Evolutionary Design of Self-assembling Systems
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.179-188, 2006
    @INCOLLECTION{Krasnogor2006,
      title = {A Critical View of the Evolutionary Design of Self-assembling Systems},
      author = {Krasnogor, Natalio and Terrazas, Graciela and Pelta, David A. and Ochoa, Gabriela},
      year = 2006,
      doi = {10.1007/11740698_16},
      booktitle = {Artificial Evolution},
      publisher = {Springer Berlin Heidelberg},
      volume = {3871},
      series = {Lecture Notes in Computer Science},
      pages = {179--188}
    }
    
  • DOI BibTeX
    J. Bacardit, N. Krasnogor
    Smart crossover operator with multiple parents for a Pittsburgh learning classifier system
    in Proceedings of the 8th annual conference on Genetic and evolutionary computation - GECCO '06, p.1441, Seattle, Washington, USA, 2006
    @INPROCEEDINGS{Bacardit2006a,
      title = {Smart crossover operator with multiple parents for a Pittsburgh learning classifier system},
      author = {Bacardit, Jaume and Krasnogor, Natalio},
      year = 2006,
      doi = {10.1145/1143997.1144235},
      booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation  - GECCO '06},
      pages = {1441},
      address = {Seattle, Washington, USA}
    }
    

2005

  • DOI BibTeX
    D. Pelta, N. Krasnogor, C. Bousono-Calzon, J.L. Verdegay, J. Hirst, E. Burke
    A fuzzy sets based generalization of contact maps for the overlap of protein structures
    in Fuzzy Sets and Systems, 152(1):103-123, May 2005
    @ARTICLE{Pelta2005,
      title = {A fuzzy sets based generalization of contact maps for the overlap of protein structures},
      author = {Pelta, David and Krasnogor, Natalio and Bousono-Calzon, Carlos and Verdegay, José L. and Hirst, J. and Burke, Edmund},
      year = 2005,
      doi = {10.1016/j.fss.2004.10.017},
      month = may,
      journal = {Fuzzy Sets and Systems},
      volume = {152},
      number = {1},
      pages = {103--123}
    }
    
  • eprint BibTeX
    D. Pelta, J. Gonzales, N. Krasnogor
    Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric
    in Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications, p.1124-1129, Barcelona, Spain, September 2005
    @INPROCEEDINGS{Pelta2005a,
      title = {Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric},
      author = {Pelta, D.A. and Gonzales, J.R. and Krasnogor, N.},
      year = 2005,
      month = sep,
      booktitle = {Fourth Conference of the European Society for Fuzzy Logic and Technology and 11 Recontres Francophones sur la Logique Floue et ses Applications},
      pages = {1124--1129},
      address = {Barcelona, Spain}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, J. Smith
    A Tutorial for Competent Memetic Algorithms: Model, Taxonomy, and Design Issues
    in IEEE Transactions on Evolutionary Computation, 9(5):474-488, October 2005
    @ARTICLE{Krasnogor2005,
      title = {A Tutorial for Competent Memetic Algorithms: Model, Taxonomy, and Design Issues},
      author = {Krasnogor, N. and Smith, J.},
      year = 2005,
      doi = {10.1109/TEVC.2005.850260},
      month = oct,
      journal = {IEEE Transactions on Evolutionary Computation},
      volume = {9},
      number = {5},
      pages = {474--488}
    }
    
  • DOI BibTeX
    J. Bacardit
    Analysis of the initialization stage of a Pittsburgh approach learning classifier system
    in Proceedings of the 2005 conference on Genetic and evolutionary computation - GECCO '05, p.1843, Washington DC, USA, 2005
    @INPROCEEDINGS{Bacardit2005,
      title = {Analysis of the initialization stage of a Pittsburgh approach learning classifier system},
      author = {Bacardit, Jaume},
      year = 2005,
      doi = {10.1145/1068009.1068321},
      booktitle = {Proceedings of the 2005 conference on Genetic and evolutionary computation  - GECCO '05},
      pages = {1843},
      address = {Washington DC, USA}
    }
    
  • DOI BibTeX
    S. Gustafson, E.K. Burke, N. Krasnogor
    On Improving Genetic Programming for Symbolic Regression
    in 2005 IEEE Congress on Evolutionary Computation, p.912-919, Edinburgh, Scotland, UK, 2005
    @INPROCEEDINGS{Gustafson2005a,
      title = {On Improving Genetic Programming for Symbolic Regression},
      author = {Gustafson, S. and Burke, E. K. and Krasnogor, N.},
      year = 2005,
      doi = {10.1109/CEC.2005.1554780},
      booktitle = {2005 IEEE Congress on Evolutionary Computation},
      pages = {912--919},
      address = {Edinburgh, Scotland, UK}
    }
    
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, J. Giavitto
    On Self-assembly in Population P Systems
    in Unconventional Computation, Lecture Notes in Computer Science 3699, p.46-57, 2005
    @INCOLLECTION{Bernardini2005b,
      title = {On Self-assembly in Population P Systems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Giavitto, Jean-Louis},
      year = 2005,
      doi = {10.1007/11560319_6},
      booktitle = {Unconventional Computation},
      publisher = {Springer Berlin Heidelberg},
      volume = {3699},
      series = {Lecture Notes in Computer Science},
      pages = {46--57}
    }
    
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, G. Terrazas
    Membrane Computing — Current Results and Future Problems
    in New Computational Paradigms, Lecture Notes in Computer Science 3526, p.49-53, 2005
    @INCOLLECTION{Bernardini2005a,
      title = {Membrane Computing — Current Results and Future Problems},
      author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Terrazas, German},
      year = 2005,
      doi = {10.1007/11494645_6},
      booktitle = {New Computational Paradigms},
      publisher = {Springer Berlin Heidelberg},
      volume = {3526},
      series = {Lecture Notes in Computer Science},
      pages = {49--53}
    }
    
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor, G. Kendall, M. Gheorghe
    Automated Tile Design for Self-Assembly Conformations
    in 2005 IEEE Congress on Evolutionary Computation, p.1808-1814, Edinburgh, Scotland, UK, 2005
    @INPROCEEDINGS{Terrazas2005a,
      title = {Automated Tile Design for Self-Assembly Conformations},
      author = {Terrazas, G. and Krasnogor, N. and Kendall, G. and Gheorghe, M.},
      year = 2005,
      doi = {10.1109/CEC.2005.1554907},
      booktitle = {2005 IEEE Congress on Evolutionary Computation},
      pages = {1808--1814},
      address = {Edinburgh, Scotland, UK}
    }
    
  • DOI BibTeX
    F. Bernardini, F.J. Romero-Campero, M. Gheorghe, M.J. Perez-Jimenez, M. Margenstern, S. Verlan, N. Krasnogor
    On P systems with bounded parallelism
    in Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05), p.8 pp., Timisoara, Romania, 2005
    @INPROCEEDINGS{Bernardini2005,
      title = {On P systems with bounded parallelism},
      author = {Bernardini, F. and Romero-Campero, F. J. and Gheorghe, M. and Perez-Jimenez, M. J. and Margenstern, M. and Verlan, S. and Krasnogor, N.},
      year = 2005,
      doi = {10.1109/SYNASC.2005.51},
      booktitle = {Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05)},
      pages = {8 pp.},
      address = {Timisoara, Romania}
    }
    
  • DOI eprint BibTeX
    S. Gustafson, E.K. Burke, N. Krasnogor
    The Tree-String Problem: An Artificial Domain for Structure and Content Search
    in Genetic Programming, Lecture Notes in Computer Science 3447, p.215-226, 2005
    @INCOLLECTION{Gustafson2005,
      title = {The Tree-String Problem: An Artificial Domain for Structure and Content Search},
      author = {Gustafson, Steven and Burke, Edmund K. and Krasnogor, Natalio},
      year = 2005,
      doi = {10.1007/978-3-540-31989-4_19},
      booktitle = {Genetic Programming},
      publisher = {Springer Berlin Heidelberg},
      volume = {3447},
      series = {Lecture Notes in Computer Science},
      pages = {215--226}
    }
    
  • DOI eprint BibTeX
    G. Escuela, G. Ochoa, N. Krasnogor
    Evolving L-Systems to Capture Protein Structure Native Conformations
    in Genetic Programming, Lecture Notes in Computer Science 3447, p.74-84, 2005
    @INCOLLECTION{Escuela2005,
      title = {Evolving L-Systems to Capture Protein Structure Native Conformations},
      author = {Escuela, Gabi and Ochoa, Gabriela and Krasnogor, Natalio},
      year = 2005,
      doi = {10.1007/978-3-540-31989-4_7},
      booktitle = {Genetic Programming},
      publisher = {Springer Berlin Heidelberg},
      volume = {3447},
      series = {Lecture Notes in Computer Science},
      pages = {74--84}
    }
    
  • DOI BibTeX
    W.E. Hart, J.E. Smith, N. Krasnogor
    Recent Advances in Memetic Algorithms
    Studies in Fuzziness and Soft Computing 166, Springer-Verlag, 2005
    @BOOK{Hart2005,
      title = {Recent Advances in Memetic Algorithms},
      author = {Hart, William E. and Smith, J. E. and Krasnogor, N.},
      year = 2005,
      doi = {10.1007/3-540-32363-5},
      publisher = {Springer-Verlag},
      volume = {166},
      series = {Studies in Fuzziness and Soft Computing}
    }
    

2004

  • DOI eprint BibTeX
    N. Krasnogor
    Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case
    in Genetic Programming and Evolvable Machines, 5(2):181-201, June 2004
    @ARTICLE{Krasnogor2004a,
      title = {Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case},
      author = {Krasnogor, N.},
      year = 2004,
      doi = {10.1023/B:GENP.0000023687.41210.d7},
      month = jun,
      journal = {Genetic Programming and Evolvable Machines},
      volume = {5},
      number = {2},
      pages = {181--201}
    }
    
  • DOI eprint BibTeX
    M. Lozano, F. Herrera, N. Krasnogor, D. Molina
    Real-Coded Memetic Algorithms with Crossover Hill-Climbing
    in Evolutionary Computation, 12(3):273-302, September 2004
    @ARTICLE{Lozano2004,
      title = {Real-Coded Memetic Algorithms with Crossover Hill-Climbing},
      author = {Lozano, Manuel and Herrera, Francisco and Krasnogor, Natalio and Molina, Daniel},
      year = 2004,
      doi = {10.1162/1063656041774983},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {12},
      number = {3},
      pages = {273--302}
    }
    
  • DOI BibTeX
    W.E. Hart, N. Krasnogor, J.E. Smith
    Editorial Introduction Special Issue on Memetic Algorithms
    in Evolutionary Computation, 12(3):v-vi, September 2004
    @ARTICLE{Hart2004,
      title = {Editorial Introduction Special Issue on Memetic Algorithms},
      author = {Hart, W. E. and Krasnogor, N. and Smith, J. E.},
      year = 2004,
      doi = {10.1162/1063656041775009},
      month = sep,
      journal = {Evolutionary Computation},
      volume = {12},
      number = {3},
      pages = {v--vi}
    }
    
  • DOI BibTeX
    J. Aguilar-Ruiz, J. Bacardit, F. Divina
    Experimental Evaluation of Discretization Schemes for Rule Induction
    in Genetic and Evolutionary Computation – GECCO 2004, Lecture Notes in Computer Science 3102, p.828-839, 2004
    @INCOLLECTION{Aguilar-Ruiz2004,
      title = {Experimental Evaluation of Discretization Schemes for Rule Induction},
      author = {Aguilar-Ruiz, Jesus and Bacardit, Jaume and Divina, Federico},
      year = 2004,
      doi = {10.1007/978-3-540-24854-5_85},
      booktitle = {Genetic and Evolutionary Computation – GECCO 2004},
      publisher = {Springer Berlin Heidelberg},
      volume = {3102},
      series = {Lecture Notes in Computer Science},
      pages = {828--839}
    }
    
  • DOI BibTeX
    J. Bacardit, D.E. Goldberg, M.V. Butz, X. Llorà, J.M. Garrell
    Speeding-Up Pittsburgh Learning Classifier Systems: Modeling Time and Accuracy
    in Parallel Problem Solving from Nature - PPSN VIII, Lecture Notes in Computer Science 3242, p.1021-1031, 2004
    @INCOLLECTION{Bacardit2004a,
      title = {Speeding-Up Pittsburgh Learning Classifier Systems: Modeling Time and Accuracy},
      author = {Bacardit, Jaume and Goldberg, David E. and Butz, Martin V. and Llorà, Xavier and Garrell, Josep M.},
      year = 2004,
      doi = {10.1007/978-3-540-30217-9_103},
      booktitle = {Parallel Problem Solving from Nature - PPSN VIII},
      publisher = {Springer Berlin Heidelberg},
      volume = {3242},
      series = {Lecture Notes in Computer Science},
      pages = {1021--1031}
    }
    
  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Analysis and Improvements of the Adaptive Discretization Intervals Knowledge Representation
    in Genetic and Evolutionary Computation – GECCO 2004, Lecture Notes in Computer Science 3103, p.726-738, 2004
    @INCOLLECTION{Bacardit2004b,
      title = {Analysis and Improvements of the Adaptive Discretization Intervals Knowledge Representation},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2004,
      doi = {10.1007/978-3-540-24855-2_88},
      booktitle = {Genetic and Evolutionary Computation – GECCO 2004},
      publisher = {Springer Berlin Heidelberg},
      volume = {3103},
      series = {Lecture Notes in Computer Science},
      pages = {726--738}
    }
    
  • eprint BibTeX
    J. Bacardit
    Pittsburgh Genetics-Based Machine Learning in the Data Mining era: Representations, generalization, and run-time
    PhD thesis, Ramon Llull University, Barcelona, Spain, 2004
    @PHDTHESIS{Bacardit2004,
      title = {Pittsburgh Genetics-Based Machine Learning in the Data Mining era: Representations, generalization, and run-time},
      author = {Bacardit, Jaume},
      year = 2004,
      school = {Ramon Llull University, Barcelona, Spain}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, S. Gustafson
    A Study on the use of self-generation'' in memetic algorithms</div> <div>in <em>Natural Computing</em>, 3(1):53-76, 2004</div> <pre id="Krasnogor2004b"> @ARTICLE{Krasnogor2004b, title = {A Study on the use ofself-generation'' in memetic algorithms}, author = {Krasnogor, Natalio and Gustafson, Steven}, year = 2004, doi = {10.1023/B:NACO.0000023419.83147.67}, journal = {Natural Computing}, volume = {3}, number = {1}, pages = {53--76} }

2003

  • DOI BibTeX
    J. Bacardit, J.M. Garrell
    Evolving Multiple Discretizations with Adaptive Intervals for a Pittsburgh Rule-Based Learning Classifier System
    in Genetic and Evolutionary Computation — GECCO 2003, Lecture Notes in Computer Science 2724, p.1818-1831, 2003
    @INCOLLECTION{Bacardit2003,
      title = {Evolving Multiple Discretizations with Adaptive Intervals for a Pittsburgh Rule-Based Learning Classifier System},
      author = {Bacardit, Jaume and Garrell, Josep Maria},
      year = 2003,
      doi = {10.1007/3-540-45110-2_80},
      booktitle = {Genetic and Evolutionary Computation — GECCO 2003},
      publisher = {Springer Berlin Heidelberg},
      volume = {2724},
      series = {Lecture Notes in Computer Science},
      pages = {1818--1831}
    }
    

2002

  • DOI eprint BibTeX
    E. Burke, S. Gustafson, G. Kendall, N. Krasnogor
    Advanced Population Diversity Measures in Genetic Programming
    in Parallel Problem Solving from Nature — PPSN VII, Lecture Notes in Computer Science 2439, p.341-350, 2002
    @INCOLLECTION{Burke2002,
      title = {Advanced Population Diversity Measures in Genetic Programming},
      author = {Burke, Edmund and Gustafson, Steven and Kendall, Graham and Krasnogor, Natalio},
      year = 2002,
      doi = {10.1007/3-540-45712-7_33},
      booktitle = {Parallel Problem Solving from Nature — PPSN VII},
      publisher = {Springer Berlin Heidelberg},
      volume = {2439},
      series = {Lecture Notes in Computer Science},
      pages = {341--350}
    }
    
  • DOI eprint BibTeX
    N. Krasnogor, B.P. Blackburne, E.K. Burke, J.D. Hirst
    Multimeme Algorithms for Protein Structure Prediction
    in Parallel Problem Solving from Nature — PPSN VII, Lecture Notes in Computer Science 2439, p.769-778, 2002
    @INCOLLECTION{Krasnogor2002,
      title = {Multimeme Algorithms for Protein Structure Prediction},
      author = {Krasnogor, N. and Blackburne, B. P. and Burke, E. K. and Hirst, J. D.},
      year = 2002,
      doi = {10.1007/3-540-45712-7_74},
      booktitle = {Parallel Problem Solving from Nature — PPSN VII},
      publisher = {Springer Berlin Heidelberg},
      volume = {2439},
      series = {Lecture Notes in Computer Science},
      pages = {769--778}
    }