Publications

2024

  • DOI BibTeX
    L. Xiao, L. Jia, J. Dai, Y. Cao, Y. Li, Q. Zhu, J. Li, M. Liu
    Design and Analysis of a Novel Distributed Gradient Neural Network for Solving Consensus Problems in a Predefined Time
    in IEEE Transactions on Neural Networks and Learning Systems, 35(3):3478-3487, March 2024
    @ARTICLE{Xiao2022a,
  title = {Design and Analysis of a Novel Distributed Gradient Neural Network for Solving Consensus Problems in a Predefined Time},
  author = {Xiao, Lin and Jia, Lei and Dai, Jianhua and Cao, Yingkun and Li, Yiwei and Zhu, Quanxin and Li, Jichun and Liu, Min},
  year = 2024,
  doi = {10.1109/TNNLS.2022.3193429},
  month = mar,
  journal = {IEEE Transactions on Neural Networks and Learning Systems},
  volume = {35},
  number = {3},
  pages = {3478--3487}
}

2023

  • DOI BibTeX
    L. Xiao, W. Huang, X. Li, F. Sun, Q. Liao, L. Jia, J. Li, S. Liu
    ZNNs With a Varying-Parameter Design Formula for Dynamic Sylvester Quaternion Matrix Equation
    in IEEE Transactions on Neural Networks and Learning Systems, 34(12):9981-9991, December 2023
    @ARTICLE{Xiao2022,
  title = {ZNNs With a Varying-Parameter Design Formula for Dynamic Sylvester Quaternion Matrix Equation},
  author = {Xiao, Lin and Huang, Wenqian and Li, Xiaopeng and Sun, Fuchun and Liao, Qing and Jia, Lei and Li, Jichun and Liu, Sai},
  year = 2023,
  doi = {10.1109/TNNLS.2022.3163293},
  month = dec,
  journal = {IEEE Transactions on Neural Networks and Learning Systems},
  volume = {34},
  number = {12},
  pages = {9981--9991}
}

2022

  • DOI BibTeX
    K. James, J. Muñoz-Muñoz
    Computational Network Inference for Bacterial Interactomics
    in mSystems, 7(2), April 2022
    @ARTICLE{James2022,
  title = {Computational Network Inference for Bacterial Interactomics},
  author = {James, Katherine and Muñoz-Muñoz, Jose},
  year = 2022,
  doi = {10.1128/msystems.01456-21},
  month = apr,
  journal = {mSystems},
  volume = {7},
  number = {2}
  • DOI BibTeX
    H. Fellermann, R.M. Füchslin
    Editorial: The 2019 Conference on Artificial Life Special Issue
    in Artificial Life, 28(2):171-172, June 2022
    @ARTICLE{Fellermann2022,
  title = {Editorial: The 2019 Conference on Artificial Life Special Issue},
  author = {Fellermann, Harold and Füchslin, Rudolf M.},
  year = 2022,
  doi = {10.1162/artl_e_00380},
  month = jun,
  journal = {Artificial Life},
  volume = {28},
  number = {2},
  pages = {171--172}
}
  • DOI BibTeX
    Y. Xia, P.G. Jayathilake, B. Li, P. Zuliani, D. Deehan, J. Longyear, P. Stoodley, J. Chen
    Coupled CFD‐DEM modeling to predict how EPS affects bacterial biofilm deformation, recovery and detachment under flow conditions
    in Biotechnology and Bioengineering, 119(9):2551-2563, September 2022
    @ARTICLE{Xia2022,
  title = {Coupled CFD‐DEM modeling to predict how EPS affects bacterial biofilm deformation, recovery and detachment under flow conditions},
  author = {Xia, Yuqing and Jayathilake, Pahala G. and Li, Bowen and Zuliani, Paolo and Deehan, David and Longyear, Jennifer and Stoodley, Paul and Chen, Jinju},
  year = 2022,
  doi = {10.1002/bit.28146},
  month = sep,
  journal = {Biotechnology and Bioengineering},
  volume = {119},
  number = {9},
  pages = {2551--2563}
}
  • DOI BibTeX
    R.M. Füchslin, J. Ambühl, A. Faggian, H.M. Fellermann, D. Flumini, A. Geller, M.M. Hanczyc, A. Klinkert, P. Krütli, H. Matuttis, T. Ott, S. Scheidegger, G.B. Schmid, T. Smieszek, J.J. Schneider, A. Steiner, M.S. Weyland
    Ethical Aspects of Computational Modelling in Science, Decision Support and Communication
    in Artificial Life and Evolutionary Computation, Communications in Computer and Information Science 1722, p.263-293, 2022
    @INCOLLECTION{Fuchslin2022,
  title = {Ethical Aspects of Computational Modelling in Science, Decision Support and Communication},
  author = {Füchslin, Rudolf Marcel and Ambühl, Jacques and Faggian, Alessia and Fellermann, Harold M. and Flumini, Dandolo and Geller, Armando and Hanczyc, Martin M. and Klinkert, Andreas and Krütli, Pius and Matuttis, Hans-Georg and Ott, Thomas and Scheidegger, Stephan and Schmid, Gary Bruno and Smieszek, Timo and Schneider, Johannes J. and Steiner, Albert and Weyland, Mathias S.},
  year = 2022,
  doi = {10.1007/978-3-031-23929-8_24},
  booktitle = {Artificial Life and Evolutionary Computation},
  publisher = {Springer Nature Switzerland},
  volume = {1722},
  series = {Communications in Computer and Information Science},
  pages = {263--293}
}

2021

  • DOI BibTeX
    Y. Xia, P.G. Jayathilake, B. Li, P. Zuliani, J. Chen
    CFD–DEM modelling of biofilm streamer oscillations and their cohesive failure in fluid flow
    in Biotechnology and Bioengineering, 118(2):918-929, February 2021
    @ARTICLE{Xia2021,
  title = {CFD–DEM modelling of biofilm streamer oscillations and their cohesive failure in fluid flow},
  author = {Xia, Yuqing and Jayathilake, Pahala G. and Li, Bowen and Zuliani, Paolo and Chen, Jinju},
  year = 2021,
  doi = {10.1002/bit.27619},
  month = feb,
  journal = {Biotechnology and Bioengineering},
  volume = {118},
  number = {2},
  pages = {918--929}
}
  • DOI BibTeX
    S. Konur, L. Mierla, H. Fellermann, C. Ladroue, B. Brown, A. Wipat, J. Twycross, B.P. Dun, S. Kalvala, M. Gheorghe, N. Krasnogor
    Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation
    in ACS Synthetic Biology, 10(8):1931-1945, August 2021
    @ARTICLE{Konur2021,
  title = {Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation},
  author = {Konur, Savas and Mierla, Laurentiu and Fellermann, Harold and Ladroue, Christophe and Brown, Bradley and Wipat, Anil and Twycross, Jamie and Dun, Boyang Peter and Kalvala, Sara and Gheorghe, Marian and Krasnogor, Natalio},
  year = 2021,
  doi = {10.1021/acssynbio.1c00143},
  month = aug,
  journal = {ACS Synthetic Biology},
  volume = {10},
  number = {8},
  pages = {1931--1945}
}
  • DOI BibTeX
    S.W. Choo, W.K. Mohammed, N.V.R. Mutha, N. Rostami, H. Ahmed, N. Krasnogor, G.Y.A. Tan, N.S. Jakubovics
    Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis
    in Applied and Environmental Microbiology, 87(22), October 2021
    @ARTICLE{Choo2021,
  title = {Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis},
  author = {Choo, Siew Woh and Mohammed, Waleed K. and Mutha, Naresh V. R. and Rostami, Nadia and Ahmed, Halah and Krasnogor, Natalio and Tan, Geok Yuan Annie and Jakubovics, Nicholas S.},
  year = 2021,
  doi = {10.1128/AEM.01558-21},
  month = oct,
  journal = {Applied and Environmental Microbiology},
  volume = {87},
  number = {22}

2020

  • DOI BibTeX
    T.E. Gorochowski, S. Hauert, J. Kreft, L. Marucci, N.R. Stillman, T.-.D. Tang, L. Bandiera, V. Bartoli, D.O.R. Dixon, A.J.H. Fedorec, H. Fellermann, A.G. Fletcher, T. Foster, L. Giuggioli, A. Matyjaszkiewicz, S. McCormick, S. Montes Olivas, J. Naylor, A. Rubio Denniss, D. Ward
    Toward Engineering Biosystems With Emergent Collective Functions
    in Frontiers in Bioengineering and Biotechnology, 8, June 2020
    @ARTICLE{Gorochowski2020,
  title = {Toward Engineering Biosystems With Emergent Collective Functions},
  author = {Gorochowski, Thomas E. and Hauert, Sabine and Kreft, Jan-Ulrich and Marucci, Lucia and Stillman, Namid R. and Tang, T. -Y. Dora and Bandiera, Lucia and Bartoli, Vittorio and Dixon, Daniel O. R. and Fedorec, Alex J. H. and Fellermann, Harold and Fletcher, Alexander G. and Foster, Tim and Giuggioli, Luca and Matyjaszkiewicz, Antoni and McCormick, Scott and Montes Olivas, Sandra and Naylor, Jonathan and Rubio Denniss, Ana and Ward, Daniel},
  year = 2020,
  doi = {10.3389/fbioe.2020.00705},
  month = jun,
  journal = {Frontiers in Bioengineering and Biotechnology},
  volume = {8}

2019

  • DOI BibTeX
    O.K. Oyebamiji, D.J. Wilkinson, B. Li, P.G. Jayathilake, P. Zuliani, T.P. Curtis
    Bayesian emulation and calibration of an individual-based model of microbial communities
    in Journal of Computational Science, 30(C):194-208, January 2019
    @ARTICLE{Oyebamiji2019,
  title = {Bayesian emulation and calibration of an individual-based model of microbial communities},
  author = {Oyebamiji, O. K. and Wilkinson, D. J. and Li, B. and Jayathilake, P. G. and Zuliani, P. and Curtis, T. P.},
  year = 2019,
  doi = {10.1016/j.jocs.2018.12.007},
  month = jan,
  journal = {Journal of Computational Science},
  volume = {30},
  number = {C},
  pages = {194--208}
}
  • DOI BibTeX
    B. Corominas-Murtra, H. Fellermann, R. Solé
    Protocell Cycles as Thermodynamic Cycles
    in The Energetics of Computing in Life and Machines, p.149-167, June 2019
    @INCOLLECTION{Corominas-Murtra2019,
  title = {Protocell Cycles as Thermodynamic Cycles},
  author = {Corominas-Murtra, Bernat and Fellermann, Harold and Solé, Ricard},
  year = 2019,
  doi = {10.37911/9781947864078.06},
  month = jun,
  booktitle = {The Energetics of Computing in Life and Machines},
  publisher = {SFI Press},
  pages = {149--167}
}
  • DOI BibTeX
    H. Fellermann, B. Shirt-Ediss, J. Kozyra, M. Linsley, D. Lendrem, J. Isaacs, T. Howard
    Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists
    in Pharmaceutical Statistics, 18(4):402-406, July 2019
    @ARTICLE{Fellermann2019,
  title = {Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists},
  author = {Fellermann, Harold and Shirt-Ediss, Ben and Kozyra, Jerzy and Linsley, Matt and Lendrem, Dennis and Isaacs, John and Howard, Thomas},
  year = 2019,
  doi = {10.1002/pst.1932},
  month = jul,
  journal = {Pharmaceutical Statistics},
  volume = {18},
  number = {4},
  pages = {402--406}
}
  • DOI BibTeX
    P.G. Jayathilake, B. Li, P. Zuliani, T. Curtis, J. Chen
    Modelling bacterial twitching in fluid flows: a CFD-DEM approach
    in Scientific Reports, 9(1), October 2019
    @ARTICLE{Jayathilake2019,
  title = {Modelling bacterial twitching in fluid flows: a CFD-DEM approach},
  author = {Jayathilake, Pahala Gedara and Li, Bowen and Zuliani, Paolo and Curtis, Tom and Chen, Jinju},
  year = 2019,
  doi = {10.1038/s41598-019-51101-3},
  month = oct,
  journal = {Scientific Reports},
  volume = {9},
  number = {1}
  • DOI BibTeX
    J. Naylor, H. Fellermann, N. Krasnogor
    Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations
    in Bioinformatics, 35(19):3859-3860, October 2019
    @ARTICLE{Naylor2019,
  title = {Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations},
  author = {Naylor, Jonathan and Fellermann, Harold and Krasnogor, Natalio},
  year = 2019,
  doi = {10.1093/bioinformatics/btz131},
  month = oct,
  journal = {Bioinformatics},
  volume = {35},
  number = {19},
  pages = {3859--3860}
}
  • DOI BibTeX
    L. Grozinger, M. Amos, T.E. Gorochowski, P. Carbonell, D.A. Oyarzún, R. Stoof, H. Fellermann, P. Zuliani, H. Tas, A. Goñi-Moreno
    Pathways to cellular supremacy in biocomputing
    in Nature Communications, 10(1), November 2019
    @ARTICLE{Grozinger2019,
  title = {Pathways to cellular supremacy in biocomputing},
  author = {Grozinger, Lewis and Amos, Martyn and Gorochowski, Thomas E. and Carbonell, Pablo and Oyarzún, Diego A. and Stoof, Ruud and Fellermann, Harold and Zuliani, Paolo and Tas, Huseyin and Goñi-Moreno, Angel},
  year = 2019,
  doi = {10.1038/s41467-019-13232-z},
  month = nov,
  journal = {Nature Communications},
  volume = {10},
  number = {1}
  • DOI BibTeX
    H. Fellermann, J. Bacardit, A. Goñi-Moreno, R.M. Füchslin
    Artificial Life in a Challenged World
    in The 2019 Conference on Artificial Life, p.1-3, Newcastle, United Kingdom, 2019
    @INPROCEEDINGS{Fellermann2019b,
  title = {Artificial Life in a Challenged World},
  author = {Fellermann, Harold and Bacardit, Jaume and Goñi-Moreno, Angel and Füchslin, Rudolf M.},
  year = 2019,
  doi = {10.1162/isal_a_00123},
  booktitle = {The 2019 Conference on Artificial Life},
  pages = {1--3},
  address = {Newcastle, United Kingdom}
}
  • DOI BibTeX
    H. Fellermann, A.S. Penn, R.M. Füchslin, J. Bacardit, A. Goñi-Moreno
    Towards Low-Carbon Conferencing: Acceptance of Virtual Conferencing Solutions and Other Sustainability Measures in the ALIFE Community
    in The 2019 Conference on Artificial Life, p.21-27, Newcastle, United Kingdom, 2019
    @INPROCEEDINGS{Fellermann2019a,
  title = {Towards Low-Carbon Conferencing: Acceptance of Virtual Conferencing Solutions and Other Sustainability Measures in the ALIFE Community},
  author = {Fellermann, Harold and Penn, Alexandra S. and Füchslin, Rudolf M. and Bacardit, Jaume and Goñi-Moreno, Angel},
  year = 2019,
  doi = {10.1162/isal_a_00133},
  booktitle = {The 2019 Conference on Artificial Life},
  pages = {21--27},
  address = {Newcastle, United Kingdom}
}

2018

  • DOI data BibTeX
    O. Markovitch, N. Krasnogor
    Predicting species emergence in simulated complex pre-biotic networks
    in PLOS ONE, 13(2):e0192871, February 2018
    10.5281/zenodo.56534
    @ARTICLE{Markovitch2018,
  title = {Predicting species emergence in simulated complex pre-biotic networks},
  author = {Markovitch, Omer and Krasnogor, Natalio},
  year = 2018,
  doi = {10.1371/journal.pone.0192871},
  note = {10.5281/zenodo.56534},
  month = feb,
  journal = {PLOS ONE},
  volume = {13},
  number = {2},
  pages = {e0192871}
}
  • DOI BibTeX
    O.K. Oyebamiji, D.J. Wilkinson, P.G. Jayathilake, S.P. Rushton, B. Bridgens, B. Li, P. Zuliani
    A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation
    in PLOS ONE, 13(4):e0195484, April 2018
    @ARTICLE{Oyebamiji2018,
  title = {A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation},
  author = {Oyebamiji, Oluwole K. and Wilkinson, Darren J. and Jayathilake, Pahala Gedara and Rushton, Steve P. and Bridgens, Ben and Li, Bowen and Zuliani, Paolo},
  year = 2018,
  doi = {10.1371/journal.pone.0195484},
  month = apr,
  journal = {PLOS ONE},
  volume = {13},
  number = {4},
  pages = {e0195484}
}
  • DOI BibTeX
    W. Hordijk, J. Naylor, N. Krasnogor, H. Fellermann
    Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World
    in Life, 8(3):33, August 2018
    @ARTICLE{Hordijk2018,
  title = {Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World},
  author = {Hordijk, Wim and Naylor, Jonathan and Krasnogor, Natalio and Fellermann, Harold},
  year = 2018,
  doi = {10.3390/life8030033},
  month = aug,
  journal = {Life},
  volume = {8},
  number = {3},
  pages = {33}
}
  • DOI BibTeX
    H. Fellermann, B. Shirt-Ediss, J.W. Koryza, M. Linsley, D.W. Lendrem, T.P. Howard
    The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction
    in bioRxiv, 415042v2, September 2018
    @ARTICLE{Fellermann2018,
  title = {The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction},
  author = {Fellermann, Harold and Shirt-Ediss, Ben and Koryza, Jerzy W. and Linsley, Matthew and Lendrem, Dennis W. and Howard, Thomas P.},
  year = 2018,
  doi = {10.1101/415042},
  month = sep,
  journal = {bioRxiv},
  volume = {415042v2}
  • DOI BibTeX
    B. Shirt-Ediss, N. Krasnogor, H. Fellermann
    The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators
    in The 2018 Conference on Artificial Life, p.370-371, Tokyo, Japan, 2018
    @INPROCEEDINGS{Shirt-Ediss2018,
  title = {The fittest, the common, and the dullest: Selection dynamics of exact autocatalytic replicators},
  author = {Shirt-Ediss, Ben and Krasnogor, Natalio and Fellermann, Harold},
  year = 2018,
  doi = {10.1162/isal_a_00070},
  booktitle = {The 2018 Conference on Artificial Life},
  pages = {370--371},
  address = {Tokyo, Japan}
}
  • DOI BibTeX
    G. Baier, R. Rosch, P.N. Taylor, Y. Wang
    Design Principle for a Population-Based Model of Epileptic Dynamics
    in Complexity and Synergetics, p.333-347, 2018
    @INCOLLECTION{Baier2018,
  title = {Design Principle for a Population-Based Model of Epileptic Dynamics},
  author = {Baier, Gerold and Rosch, Richard and Taylor, Peter Neal and Wang, Yujiang},
  year = 2018,
  doi = {10.1007/978-3-319-64334-2_25},
  booktitle = {Complexity and Synergetics},
  publisher = {Springer International Publishing},
  pages = {333--347}
}
  • DOI BibTeX
    P.N. Taylor, N. Sinha, Y. Wang, S.B. Vos, J. de Tisi, A. Miserocchi, A.W. McEvoy, G.P. Winston, J.S. Duncan
    The impact of epilepsy surgery on the structural connectome and its relation to outcome
    in NeuroImage: Clinical, 18(C):202-214, 2018
    @ARTICLE{Taylor2018,
  title = {The impact of epilepsy surgery on the structural connectome and its relation to outcome},
  author = {Taylor, Peter N. and Sinha, Nishant and Wang, Yujiang and Vos, Sjoerd B. and de Tisi, Jane and Miserocchi, Anna and McEvoy, Andrew W. and Winston, Gavin P. and Duncan, John S.},
  year = 2018,
  doi = {10.1016/j.nicl.2018.01.028},
  journal = {NeuroImage: Clinical},
  volume = {18},
  number = {C},
  pages = {202--214}
}

2017

  • DOI BibTeX
    P.N. Taylor, Y. Wang, M. Kaiser
    Within brain area tractography suggests local modularity using high resolution connectomics
    in Scientific Reports, 7:39859, January 2017
    @ARTICLE{Taylor2017,
  title = {Within brain area tractography suggests local modularity using high resolution connectomics},
  author = {Taylor, Peter N. and Wang, Yujiang and Kaiser, Marcus},
  year = 2017,
  doi = {10.1038/srep39859},
  month = jan,
  journal = {Scientific Reports},
  volume = {7},
  pages = {39859}
}
  • DOI BibTeX
    N. Sinha, J. Dauwels, M. Kaiser, S.S. Cash, M. Brandon Westover, Y. Wang, P.N. Taylor
    Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling
    in Brain, 140(2):319-332, February 2017
    @ARTICLE{Sinha2017,
  title = {Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling},
  author = {Sinha, Nishant and Dauwels, Justin and Kaiser, Marcus and Cash, Sydney S. and Brandon Westover, M. and Wang, Yujiang and Taylor, Peter N.},
  year = 2017,
  doi = {10.1093/brain/aww299},
  month = feb,
  journal = {Brain},
  volume = {140},
  number = {2},
  pages = {319--332}
}
  • DOI BibTeX
    R. Bauer, M. Kaiser
    Nonlinear growth: an origin of hub organization in complex networks
    in Royal Society Open Science, 4(3):160691, March 2017
    @ARTICLE{Bauer2017,
  title = {Nonlinear growth: an origin of hub organization in complex networks},
  author = {Bauer, Roman and Kaiser, Marcus},
  year = 2017,
  doi = {10.1098/rsos.160691},
  month = mar,
  journal = {Royal Society Open Science},
  volume = {4},
  number = {3},
  pages = {160691}
}
  • DOI BibTeX
    L.R. Peraza, D. Nesbitt, R.A. Lawson, G.W. Duncan, A.J. Yarnall, T.K. Khoo, M. Kaiser, M.J. Firbank, J.T. O'Brien, R.A. Barker, D.J. Brooks, D.J. Burn, J. Taylor
    Intra- and inter-network functional alterations in Parkinson's disease with mild cognitive impairment
    in Human Brain Mapping, 38(3):1702-1715, March 2017
    @ARTICLE{Peraza2017,
  title = {Intra- and inter-network functional alterations in Parkinson's disease with mild cognitive impairment},
  author = {Peraza, Luis R. and Nesbitt, David and Lawson, Rachael A. and Duncan, Gordon W. and Yarnall, Alison J. and Khoo, Tien K. and Kaiser, Marcus and Firbank, Michael J. and O'Brien, John T. and Barker, Roger A. and Brooks, David J. and Burn, David J. and Taylor, John-Paul},
  year = 2017,
  doi = {10.1002/hbm.23499},
  month = mar,
  journal = {Human Brain Mapping},
  volume = {38},
  number = {3},
  pages = {1702--1715}
}
  • DOI BibTeX
    G. Baier, P.N. Taylor, Y. Wang
    Understanding Epileptiform After-Discharges as Rhythmic Oscillatory Transients
    in Frontiers in Computational Neuroscience, 11, April 2017
    @ARTICLE{Baier2017,
  title = {Understanding Epileptiform After-Discharges as Rhythmic Oscillatory Transients},
  author = {Baier, Gerold and Taylor, Peter N. and Wang, Yujiang},
  year = 2017,
  doi = {10.3389/fncom.2017.00025},
  month = apr,
  journal = {Frontiers in Computational Neuroscience},
  volume = {11}
  • DOI BibTeX
    N. Sinha, J. Dauwels, M. Kaiser, S.S. Cash, M. Brandon Westover, Y. Wang, P.N. Taylor
    Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome
    in Brain, 140(5):e31-e31, May 2017
    @ARTICLE{Sinha2017a,
  title = {Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome},
  author = {Sinha, Nishant and Dauwels, Justin and Kaiser, Marcus and Cash, Sydney S. and Brandon Westover, M. and Wang, Yujiang and Taylor, Peter N.},
  year = 2017,
  doi = {10.1093/brain/awx068},
  month = may,
  journal = {Brain},
  volume = {140},
  number = {5},
  pages = {e31--e31}
}
  • DOI BibTeX
    Y. Wang, A.J. Trevelyan, A. Valentin, G. Alarcon, P.N. Taylor, M. Kaiser
    Mechanisms underlying different onset patterns of focal seizures
    in PLOS Computational Biology, 13(5):e1005475, May 2017
    @ARTICLE{Wang2017,
  title = {Mechanisms underlying different onset patterns of focal seizures},
  author = {Wang, Yujiang and Trevelyan, Andrew J and Valentin, Antonio and Alarcon, Gonzalo and Taylor, Peter N and Kaiser, Marcus},
  year = 2017,
  doi = {10.1371/journal.pcbi.1005475},
  month = may,
  journal = {PLOS Computational Biology},
  volume = {13},
  number = {5},
  pages = {e1005475}
}
  • DOI eprint BibTeX
    B. Shirt-Ediss, S. Murillo-Sánchez, K. Ruiz-Mirazo
    Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research
    in Beilstein Journal of Organic Chemistry, 13:1388-1395, July 2017
    @ARTICLE{Shirt-Ediss2017,
  title = {Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research},
  author = {Shirt-Ediss, Ben and Murillo-Sánchez, Sara and Ruiz-Mirazo, Kepa},
  year = 2017,
  doi = {10.3762/bjoc.13.135},
  month = jul,
  journal = {Beilstein Journal of Organic Chemistry},
  volume = {13},
  pages = {1388--1395}
}
  • DOI code BibTeX
    J. Naylor, H. Fellermann, Y. Ding, W.K. Mohammed, N.S. Jakubovics, J. Mukherjee, C.A. Biggs, P.C. Wright, N. Krasnogor
    Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations
    in ACS Synthetic Biology, 6(7):1194-1210, July 2017
    @ARTICLE{Naylor2017,
  title = {Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations},
  author = {Naylor, Jonathan and Fellermann, Harold and Ding, Yuchun and Mohammed, Waleed K. and Jakubovics, Nicholas S. and Mukherjee, Joy and Biggs, Catherine A. and Wright, Phillip C. and Krasnogor, Natalio},
  year = 2017,
  doi = {10.1021/acssynbio.6b00315},
  month = jul,
  journal = {ACS Synthetic Biology},
  volume = {6},
  number = {7},
  pages = {1194--1210}
}
  • DOI BibTeX
    P.G. Jayathilake, P. Gupta, B. Li, C. Madsen, O. Oyebamiji, R. González-Cabaleiro, S. Rushton, B. Bridgens, D. Swailes, B. Allen, A.S. McGough, P. Zuliani, I.D. Ofiteru, D. Wilkinson, J. Chen, T. Curtis
    A mechanistic Individual-based Model of microbial communities
    in PLOS ONE, 12(8):e0181965, August 2017
    @ARTICLE{Jayathilake2017,
  title = {A mechanistic Individual-based Model of microbial communities},
  author = {Jayathilake, Pahala Gedara and Gupta, Prashant and Li, Bowen and Madsen, Curtis and Oyebamiji, Oluwole and González-Cabaleiro, Rebeca and Rushton, Steve and Bridgens, Ben and Swailes, David and Allen, Ben and McGough, A. Stephen and Zuliani, Paolo and Ofiteru, Irina Dana and Wilkinson, Darren and Chen, Jinju and Curtis, Tom},
  year = 2017,
  doi = {10.1371/journal.pone.0181965},
  month = aug,
  journal = {PLOS ONE},
  volume = {12},
  number = {8},
  pages = {e0181965}
}
  • DOI BibTeX
    M. Kaiser
    Mechanisms of Connectome Development
    in Trends in Cognitive Sciences, 21(9):703-717, September 2017
    @ARTICLE{Kaiser2017,
  title = {Mechanisms of Connectome Development},
  author = {Kaiser, Marcus},
  year = 2017,
  doi = {10.1016/j.tics.2017.05.010},
  month = sep,
  journal = {Trends in Cognitive Sciences},
  volume = {21},
  number = {9},
  pages = {703--717}
}
  • DOI BibTeX
    H. Fellermann, S. Tanaka, S. Rasmussen
    Sequence selection by dynamical symmetry breaking in an autocatalytic binary polymer model
    in Physical Review E, 96(6), December 2017
    @ARTICLE{Fellermann2017,
  title = {Sequence selection by dynamical symmetry breaking in an autocatalytic binary polymer model},
  author = {Fellermann, Harold and Tanaka, Shinpei and Rasmussen, Steen},
  year = 2017,
  doi = {10.1103/PhysRevE.96.062407},
  month = dec,
  journal = {Physical Review E},
  volume = {96},
  number = {6}
  • DOI eprint BibTeX
    J. Kozyra, H. Fellermann, B. Shirt-Ediss, A. Lopiccolo, N. Krasnogor
    Optimizing nucleic acid sequences for a molecular data recorder
    in Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17, p.1145-1152, Berlin, Germany, 2017
    @INPROCEEDINGS{Kozyra2017a,
  title = {Optimizing nucleic acid sequences for a molecular data recorder},
  author = {Kozyra, Jerzy and Fellermann, Harold and Shirt-Ediss, Ben and Lopiccolo, Annunziata and Krasnogor, Natalio},
  year = 2017,
  doi = {10.1145/3071178.3071345},
  booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference on   - GECCO '17},
  pages = {1145--1152},
  address = {Berlin, Germany}
}
  • DOI BibTeX
    R. Bauer, M. Kaiser
    Organisational Principles of Connectomes: Changes During Evolution and Development
    in Brain Evolution by Design, p.387-401, 2017
    @INCOLLECTION{Bauer2017a,
  title = {Organisational Principles of Connectomes: Changes During Evolution and Development},
  author = {Bauer, Roman and Kaiser, Marcus},
  year = 2017,
  doi = {10.1007/978-4-431-56469-0_17},
  booktitle = {Brain Evolution by Design},
  publisher = {Springer Japan},
  pages = {387--401}
}
  • DOI BibTeX
    S. Lim, F. Hutchings, M. Kaiser
    Modeling the Impact of Lesions in the Brain
    in The Rewiring Brain, p.465-484, 2017
    @INCOLLECTION{Lim2017,
  title = {Modeling the Impact of Lesions in the Brain},
  author = {Lim, Sol and Hutchings, Frances and Kaiser, Marcus},
  year = 2017,
  doi = {10.1016/B978-0-12-803784-3.00022-6},
  booktitle = {The Rewiring Brain},
  publisher = {Elsevier},
  pages = {465--484}
}
  • DOI BibTeX
    F. Shmarov, N. Paoletti, E. Bartocci, S. Lin, S.A. Smolka, P. Zuliani
    SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems
    in Hardware and Software: Verification and Testing, Lecture Notes in Computer Science 10629, p.131-146, 2017
    @INCOLLECTION{Shmarov2017,
  title = {SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems},
  author = {Shmarov, Fedor and Paoletti, Nicola and Bartocci, Ezio and Lin, Shan and Smolka, Scott A. and Zuliani, Paolo},
  year = 2017,
  doi = {10.1007/978-3-319-70389-3_9},
  booktitle = {Hardware and Software: Verification and Testing},
  publisher = {Springer International Publishing},
  volume = {10629},
  series = {Lecture Notes in Computer Science},
  pages = {131--146}
}

2016

  • DOI BibTeX
    S. Edwin Thanarajah, C.E. Han, A. Rotarska-Jagiela, W. Singer, R. Deichmann, K. Maurer, M. Kaiser, P.J. Uhlhaas
    Abnormal Connectional Fingerprint in Schizophrenia: A Novel Network Analysis of Diffusion Tensor Imaging Data
    in Frontiers in Psychiatry, 7, June 2016
    @ARTICLE{EdwinThanarajah2016,
  title = {Abnormal Connectional Fingerprint in Schizophrenia: A Novel Network Analysis of Diffusion Tensor Imaging Data},
  author = {Edwin Thanarajah, Sharmili and Han, Cheol E. and Rotarska-Jagiela, Anna and Singer, Wolf and Deichmann, Ralf and Maurer, Konrad and Kaiser, Marcus and Uhlhaas, Peter J.},
  year = 2016,
  doi = {10.3389/fpsyt.2016.00114},
  month = jun,
  journal = {Frontiers in Psychiatry},
  volume = {7}
  • DOI BibTeX
    L.R. Peraza, S.J. Colloby, L. Deboys, J.T. O'Brien, M. Kaiser, J. Taylor
    Regional functional synchronizations in dementia with Lewy bodies and Alzheimer's disease
    in International Psychogeriatrics, 28(07):1143-1151, July 2016
    @ARTICLE{Peraza2016,
  title = {Regional functional synchronizations in dementia with Lewy bodies and Alzheimer's disease},
  author = {Peraza, Luis R. and Colloby, Sean J. and Deboys, Liam and O'Brien, John T. and Kaiser, Marcus and Taylor, John-Paul},
  year = 2016,
  doi = {10.1017/S1041610216000429},
  month = jul,
  journal = {International Psychogeriatrics},
  volume = {28},
  number = {07},
  pages = {1143--1151}
}
  • DOI BibTeX
    P.N. Taylor, R. Forsyth
    Heterogeneity of trans-callosal structural connectivity and effects on resting state subnetwork integrity may underlie both wanted and unwanted effects of therapeutic corpus callostomy
    in NeuroImage: Clinical, 12(C):341-347, July 2016
    @ARTICLE{Taylor2016,
  title = {Heterogeneity of trans-callosal structural connectivity and effects on resting state subnetwork integrity may underlie both wanted and unwanted effects of therapeutic corpus callostomy},
  author = {Taylor, Peter Neal and Forsyth, Rob},
  year = 2016,
  doi = {10.1016/j.nicl.2016.07.010},
  month = jul,
  journal = {NeuroImage: Clinical},
  volume = {12},
  number = {C},
  pages = {341--347}
}
  • DOI BibTeX
    F. Shmarov, P. Zuliani
    Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques
    in Hardware and Software: Verification and Testing, Lecture Notes in Computer Science 10028, p.152-168, 2016
    @INCOLLECTION{Shmarov2016,
  title = {Probabilistic Hybrid Systems Verification via SMT and Monte Carlo Techniques},
  author = {Shmarov, Fedor and Zuliani, Paolo},
  year = 2016,
  doi = {10.1007/978-3-319-49052-6_10},
  booktitle = {Hardware and Software: Verification and Testing},
  publisher = {Springer International Publishing},
  volume = {10028},
  series = {Lecture Notes in Computer Science},
  pages = {152--168}
}

2015

  • DOI BibTeX
    S. Lim, M. Kaiser
    Developmental time windows for axon growth influence neuronal network topology
    in Biological Cybernetics, 109(2):275-286, April 2015
    @ARTICLE{Lim2015,
  title = {Developmental time windows for axon growth influence neuronal network topology},
  author = {Lim, Sol and Kaiser, Marcus},
  year = 2015,
  doi = {10.1007/s00422-014-0641-3},
  month = apr,
  journal = {Biological Cybernetics},
  volume = {109},
  number = {2},
  pages = {275--286}
}
  • DOI BibTeX
    M. Kaiser
    Neuroanatomy: Connectome Connects Fly and Mammalian Brain Networks
    in Current Biology, 25(10):R416-R418, May 2015
    @ARTICLE{Kaiser2015,
  title = {Neuroanatomy: Connectome Connects Fly and Mammalian Brain Networks},
  author = {Kaiser, Marcus},
  year = 2015,
  doi = {10.1016/j.cub.2015.03.039},
  month = may,
  journal = {Current Biology},
  volume = {25},
  number = {10},
  pages = {R416--R418}
}
  • DOI BibTeX
    S. Wook Yoo, C.E. Han, J.S. Shin, S. Won Seo, D.L. Na, M. Kaiser, Y. Jeong, J. Seong
    A Network Flow-based Analysis of Cognitive Reserve in Normal Ageing and Alzheimer’s Disease
    in Scientific Reports, 5:10057, May 2015
    @ARTICLE{WookYoo2015,
  title = {A Network Flow-based Analysis of Cognitive Reserve in Normal Ageing and Alzheimer’s Disease},
  author = {Wook Yoo, Sang and Han, Cheol E. and Shin, Joseph S. and Won Seo, Sang and Na, Duk L. and Kaiser, Marcus and Jeong, Yong and Seong, Joon-Kyung},
  year = 2015,
  doi = {10.1038/srep10057},
  month = may,
  journal = {Scientific Reports},
  volume = {5},
  pages = {10057}
}
  • DOI BibTeX
    L.T. Lui, G. Terrazas, H. Zenil, C. Alexander, N. Krasnogor
    Complexity Measurement Based on Information Theory and Kolmogorov Complexity
    in Artificial Life, 21(2):205-224, May 2015
    @ARTICLE{Lui2015,
  title = {Complexity Measurement Based on Information Theory and Kolmogorov Complexity},
  author = {Lui, Leong Ting and Terrazas, Germán and Zenil, Hector and Alexander, Cameron and Krasnogor, Natalio},
  year = 2015,
  doi = {10.1162/ARTL_a_00157},
  month = may,
  journal = {Artificial Life},
  volume = {21},
  number = {2},
  pages = {205--224}
}
  • DOI BibTeX
    R.J. Tomsett, M. Ainsworth, A. Thiele, M. Sanayei, X. Chen, M.A. Gieselmann, M.A. Whittington, M.O. Cunningham, M. Kaiser
    Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue
    in Brain Structure and Function, 220(4):2333-2353, July 2015
    @ARTICLE{Tomsett2015,
  title = {Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue},
  author = {Tomsett, Richard J. and Ainsworth, Matt and Thiele, Alexander and Sanayei, Mehdi and Chen, Xing and Gieselmann, Marc A. and Whittington, Miles A. and Cunningham, Mark O. and Kaiser, Marcus},
  year = 2015,
  doi = {10.1007/s00429-014-0793-x},
  month = jul,
  journal = {Brain Structure and Function},
  volume = {220},
  number = {4},
  pages = {2333--2353}
}
  • DOI BibTeX
    C.A. Papasavvas, Y. Wang, A.J. Trevelyan, M. Kaiser
    Gain control through divisive inhibition prevents abrupt transition to chaos in a neural mass model
    in Physical Review E, 92(3), September 2015
    @ARTICLE{Papasavvas2015,
  title = {Gain control through divisive inhibition prevents abrupt transition to chaos in a neural mass model},
  author = {Papasavvas, Christoforos A. and Wang, Yujiang and Trevelyan, Andrew J. and Kaiser, Marcus},
  year = 2015,
  doi = {10.1103/PhysRevE.92.032723},
  month = sep,
  journal = {Physical Review E},
  volume = {92},
  number = {3}
  • DOI BibTeX
    L.R. Peraza, J. Taylor, M. Kaiser
    Divergent brain functional network alterations in dementia with Lewy bodies and Alzheimer's disease
    in Neurobiology of Aging, 36(9):2458-2467, September 2015
    @ARTICLE{Peraza2015,
  title = {Divergent brain functional network alterations in dementia with Lewy bodies and Alzheimer's disease},
  author = {Peraza, Luis R. and Taylor, John-Paul and Kaiser, Marcus},
  year = 2015,
  doi = {10.1016/j.neurobiolaging.2015.05.015},
  month = sep,
  journal = {Neurobiology of Aging},
  volume = {36},
  number = {9},
  pages = {2458--2467}
}
  • DOI BibTeX
    Y. Lo, R. O’Dea, J.J. Crofts, C.E. Han, M. Kaiser
    A geometric network model of intrinsic grey-matter connectivity of the human brain
    in Scientific Reports, 5:15397, October 2015
    @ARTICLE{Lo2015,
  title = {A geometric network model of intrinsic grey-matter connectivity of the human brain},
  author = {Lo, Yi-Ping and O’Dea, Reuben and Crofts, Jonathan J. and Han, Cheol E. and Kaiser, Marcus},
  year = 2015,
  doi = {10.1038/srep15397},
  month = oct,
  journal = {Scientific Reports},
  volume = {5},
  pages = {15397}
}
  • DOI BibTeX
    L.R. Peraza, S.J. Colloby, M.J. Firbank, G.S. Greasy, I.G. McKeith, M. Kaiser, J. O'Brien, J. Taylor
    Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences
    in International Journal of Geriatric Psychiatry, 30(11):1135-1146, November 2015
    @ARTICLE{Peraza2015a,
  title = {Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences},
  author = {Peraza, Luis R. and Colloby, Sean J. and Firbank, Michael J. and Greasy, G. Shirmin and McKeith, Ian G. and Kaiser, Marcus and O'Brien, John and Taylor, John-Paul},
  year = 2015,
  doi = {10.1002/gps.4342},
  month = nov,
  journal = {International Journal of Geriatric Psychiatry},
  volume = {30},
  number = {11},
  pages = {1135--1146}
}
  • DOI BibTeX
    F. Hutchings, C.E. Han, S.S. Keller, B. Weber, P.N. Taylor, M. Kaiser
    Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations
    in PLOS Computational Biology, 11(12):e1004642, December 2015
    @ARTICLE{Hutchings2015,
  title = {Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations},
  author = {Hutchings, Frances and Han, Cheol E. and Keller, Simon S. and Weber, Bernd and Taylor, Peter N. and Kaiser, Marcus},
  year = 2015,
  doi = {10.1371/journal.pcbi.1004642},
  month = dec,
  journal = {PLOS Computational Biology},
  volume = {11},
  number = {12},
  pages = {e1004642}
}
  • DOI BibTeX
    Y. Wang, F. Hutchings, M. Kaiser
    Computational modeling of neurostimulation in brain diseases
    in Computational Neurostimulation, Progress in Brain Research 222, p.191-228, 2015
    @INCOLLECTION{Wang2015,
  title = {Computational modeling of neurostimulation in brain diseases},
  author = {Wang, Yujiang and Hutchings, Frances and Kaiser, Marcus},
  year = 2015,
  doi = {10.1016/bs.pbr.2015.06.012},
  booktitle = {Computational Neurostimulation},
  publisher = {Elsevier},
  volume = {222},
  series = {Progress in Brain Research},
  pages = {191--228}
}

2014

  • DOI BibTeX
    R. Bauer, F. Zubler, A. Hauri, D.R. Muir, R.J. Douglas
    Developmental Origin of Patchy Axonal Connectivity in the Neocortex: A Computational Model
    in Cerebral Cortex, 24(2):487-500, February 2014
    @ARTICLE{Bauer2014,
  title = {Developmental Origin of Patchy Axonal Connectivity in the Neocortex: A Computational Model},
  author = {Bauer, R. and Zubler, F. and Hauri, A. and Muir, D. R. and Douglas, R. J.},
  year = 2014,
  doi = {10.1093/cercor/bhs327},
  month = feb,
  journal = {Cerebral Cortex},
  volume = {24},
  number = {2},
  pages = {487--500}
}
  • DOI eprint code BibTeX
    C. Winterhalter, P. Widera, N. Krasnogor
    JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks
    in Bioinformatics, 30(7):1029-1030, April 2014
    @ARTICLE{Winterhalter2013,
  title = {JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks},
  author = {Winterhalter, C. and Widera, P. and Krasnogor, N.},
  year = 2014,
  doi = {10.1093/bioinformatics/btt732},
  month = apr,
  journal = {Bioinformatics},
  volume = {30},
  number = {7},
  pages = {1029--1030}
}
  • DOI BibTeX
    S. Tanaka, H. Fellermann, S. Rasmussen
    Structure and selection in an autocatalytic binary polymer model
    in EPL (Europhysics Letters), 107(2):28004, July 2014
    @ARTICLE{Tanaka2014,
  title = {Structure and selection in an autocatalytic binary polymer model},
  author = {Tanaka, Shinpei and Fellermann, Harold and Rasmussen, Steen},
  year = 2014,
  doi = {10.1209/0295-5075/107/28004},
  month = jul,
  journal = {EPL (Europhysics Letters)},
  volume = {107},
  number = {2},
  pages = {28004}
}
  • DOI BibTeX
    D. Sanassy, H. Fellermann, N. Krasnogor, S. Konur, L.M. Mierla, M. Gheorghe, C. Ladroue, S. Kalvala
    Modelling and Stochastic Simulation of Synthetic Biological Boolean Gates
    in 2014 IEEE Intl Conf on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS), p.404-408, Paris, France, August 2014
    @INPROCEEDINGS{Sanassy2014a,
  title = {Modelling and Stochastic Simulation of Synthetic Biological Boolean Gates},
  author = {Sanassy, Daven and Fellermann, Harold and Krasnogor, Natalio and Konur, Savas and Mierla, Laurentiu M. and Gheorghe, Marian and Ladroue, Christophe and Kalvala, Sara},
  year = 2014,
  doi = {10.1109/HPCC.2014.68},
  month = aug,
  booktitle = {2014 IEEE Intl Conf on High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS)},
  pages = {404--408},
  address = {Paris, France}
}
  • DOI BibTeX
    J.S. Kim, M. Kaiser
    From Caenorhabditis elegans to the human connectome: a specific modular organization increases metabolic, functional and developmental efficiency
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1653):20130529-20130529, September 2014
    @ARTICLE{Kim2014,
  title = {From Caenorhabditis elegans to the human connectome: a specific modular organization increases metabolic, functional and developmental efficiency},
  author = {Kim, J. S. and Kaiser, M.},
  year = 2014,
  doi = {10.1098/rstb.2013.0529},
  month = sep,
  journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
  volume = {369},
  number = {1653},
  pages = {20130529--20130529}
}
  • DOI BibTeX
    M.-. Hutt, M. Kaiser, C.C. Hilgetag
    Perspective: network-guided pattern formation of neural dynamics
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1653):20130522-20130522, September 2014
    @ARTICLE{Hutt2014,
  title = {Perspective: network-guided pattern formation of neural dynamics},
  author = {Hutt, M. -t. and Kaiser, M. and Hilgetag, C. C.},
  year = 2014,
  doi = {10.1098/rstb.2013.0522},
  month = sep,
  journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
  volume = {369},
  number = {1653},
  pages = {20130522--20130522}
}
  • DOI BibTeX
    C.E. Han, L.R. Peraza, J. Taylor, M. Kaiser
    Predicting age across human lifespan based on structural connectivity from diffusion tensor imaging
    in 2014 IEEE Biomedical Circuits and Systems Conference (BioCAS) Proceedings, p.137-140, Lausanne, Switzerland, October 2014
    @INPROCEEDINGS{Han2014,
  title = {Predicting age across human lifespan based on structural connectivity from diffusion tensor imaging},
  author = {Han, Cheol E. and Peraza, Luis R. and Taylor, John-Paul and Kaiser, Marcus},
  year = 2014,
  doi = {10.1109/BioCAS.2014.6981664},
  month = oct,
  booktitle = {2014 IEEE Biomedical Circuits and Systems Conference (BioCAS) Proceedings},
  pages = {137--140},
  address = {Lausanne, Switzerland}
}
  • DOI
    I. Contreras, I. Arnaldo, N. Krasnogor, J.I. Hidalgo
    Blind optimisation problem instance classification via enhanced universal similarity metric
    in Memetic Computing, available online since November 2014
  • DOI BibTeX
    J.C. Chaplin, N. Krasnogor, N.A. Russell
    Photochromic molecular implementations of universal computation
    in Biosystems, 126(C):12-26, December 2014
    @ARTICLE{Chaplin2014,
  title = {Photochromic molecular implementations of universal computation},
  author = {Chaplin, Jack C. and Krasnogor, Natalio and Russell, Noah A.},
  year = 2014,
  doi = {10.1016/j.biosystems.2014.09.004},
  month = dec,
  journal = {Biosystems},
  volume = {126},
  number = {C},
  pages = {12--26}
}
  • DOI BibTeX
    R. Bauer, F. Zubler, S. Pfister, A. Hauri, M. Pfeiffer, D.R. Muir, R.J. Douglas
    Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks
    in PLoS Computational Biology, 10(12):e1003994, December 2014
    @ARTICLE{Bauer2014b,
  title = {Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks},
  author = {Bauer, Roman and Zubler, Frédéric and Pfister, Sabina and Hauri, Andreas and Pfeiffer, Michael and Muir, Dylan R. and Douglas, Rodney J.},
  year = 2014,
  doi = {10.1371/journal.pcbi.1003994},
  month = dec,
  journal = {PLoS Computational Biology},
  volume = {10},
  number = {12},
  pages = {e1003994}
}
  • DOI BibTeX
    B. Liu, S. Kong, S. Gao, P. Zuliani, E.M. Clarke
    Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions
    in Computational Methods in Systems Biology, Lecture Notes in Computer Science 8859, p.99-113, 2014
    @INCOLLECTION{Liu2014,
  title = {Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions},
  author = {Liu, Bing and Kong, Soonho and Gao, Sicun and Zuliani, Paolo and Clarke, Edmund M.},
  year = 2014,
  doi = {10.1007/978-3-319-12982-2_8},
  booktitle = {Computational Methods in Systems Biology},
  publisher = {Springer International Publishing},
  volume = {8859},
  series = {Lecture Notes in Computer Science},
  pages = {99--113}
}
  • DOI BibTeX
    R. Gross, I. Fouxon, D. Lancet, O. Markovitch
    Quasispecies in population of compositional assemblies
    in BMC Evolutionary Biology, 14(1):265, 2014
    @ARTICLE{Gross2014,
  title = {Quasispecies in population of compositional assemblies},
  author = {Gross, Renan and Fouxon, Itzhak and Lancet, Doron and Markovitch, Omer},
  year = 2014,
  doi = {10.1186/s12862-014-0265-1},
  journal = {BMC Evolutionary Biology},
  volume = {14},
  number = {1},
  pages = {265}
}
  • DOI BibTeX
    H. Fellermann, N. Krasnogor
    Chemical Production and Molecular Computing in Addressable Reaction Compartments
    in Language, Life, Limits, Lecture Notes in Computer Science 8493, p.173-182, 2014
    @INCOLLECTION{Fellermann2014a,
  title = {Chemical Production and Molecular Computing in Addressable Reaction Compartments},
  author = {Fellermann, Harold and Krasnogor, Natalio},
  year = 2014,
  doi = {10.1007/978-3-319-08019-2_18},
  booktitle = {Language, Life, Limits},
  publisher = {Springer International Publishing},
  volume = {8493},
  series = {Lecture Notes in Computer Science},
  pages = {173--182}
}

2013

  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design
    in Memetic Computing, 5(1):19-33, March 2013
    @ARTICLE{Terrazas2013,
  title = {A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design},
  author = {Terrazas, Germán and Krasnogor, Natalio},
  year = 2013,
  doi = {10.1007/s12293-012-0092-0},
  month = mar,
  journal = {Memetic Computing},
  volume = {5},
  number = {1},
  pages = {19--33}
}
  • DOI BibTeX
    B.J.W. Dekkers, S. Pearce, R.P. van Bolderen-Veldkamp, A. Marshall, P. Widera, J. Gilbert, H.-. Drost, G.W. Bassel, K. Muller, J.R. King, A.T.A. Wood, I. Grosse, M. Quint, N. Krasnogor, G. Leubner-Metzger, M.J. Holdsworth, L. Bentsink
    Transcriptional Dynamics of Two Seed Compartments with Opposing Roles in Arabidopsis Seed Germination
    in PLANT PHYSIOLOGY, 163(1):205-215, September 2013
    @ARTICLE{Dekkers2013,
  title = {Transcriptional Dynamics of Two Seed Compartments with Opposing Roles in Arabidopsis Seed Germination},
  author = {Dekkers, B. J. W. and Pearce, S. and van Bolderen-Veldkamp, R. P. and Marshall, A. and Widera, P. and Gilbert, J. and Drost, H. -g. and Bassel, G. W. and Muller, K. and King, J. R. and Wood, A. T. A. and Grosse, I. and Quint, M. and Krasnogor, N. and Leubner-Metzger, G. and Holdsworth, M. J. and Bentsink, L.},
  year = 2013,
  doi = {10.1104/pp.113.223511},
  month = sep,
  journal = {PLANT PHYSIOLOGY},
  volume = {163},
  number = {1},
  pages = {205--215}
}
  • DOI BibTeX
    L.T. Lui, X. Xue, C. Sui, A. Brown, D.I. Pritchard, N. Halliday, K. Winzer, S.M. Howdle, F. Fernandez-Trillo, N. Krasnogor, C. Alexander
    Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes
    in Nature Chemistry, 5(12):1058-1065, November 2013
    @ARTICLE{Lui2013,
  title = {Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes},
  author = {Lui, Leong T. and Xue, Xuan and Sui, Cheng and Brown, Alan and Pritchard, David I. and Halliday, Nigel and Winzer, Klaus and Howdle, Steven M. and Fernandez-Trillo, Francisco and Krasnogor, Natalio and Alexander, Cameron},
  year = 2013,
  doi = {10.1038/nchem.1793},
  month = nov,
  journal = {Nature Chemistry},
  volume = {5},
  number = {12},
  pages = {1058--1065}
}
  • DOI BibTeX
    G. Terrazas, H. Zenil, N. Krasnogor
    Exploring programmable self-assembly in non-DNA based molecular computing
    in Natural Computing, 12(4):499-515, December 2013
    @ARTICLE{Terrazas2013a,
  title = {Exploring programmable self-assembly in non-DNA based molecular computing},
  author = {Terrazas, Germán and Zenil, Hector and Krasnogor, Natalio},
  year = 2013,
  doi = {10.1007/s11047-013-9397-2},
  month = dec,
  journal = {Natural Computing},
  volume = {12},
  number = {4},
  pages = {499--515}
}
  • URL BibTeX
    G. Terrazas, L.T. Lui, N. Krasnogor
    Spatial Computation and Algorithmic Information content in Non-DNA based Molecular Self-Assembly
    in Proceedings of the Spatial Computing Workshop (SCW 2013), p.85-90, Minessota, USA, 2013
    @INPROCEEDINGS{Terrazas2013b,
  title = {Spatial Computation and Algorithmic Information content in Non-DNA based Molecular Self-Assembly},
  author = {Terrazas, German and Lui, Leong Ting and Krasnogor, Natalio},
  year = 2013,
  url = {http://www.spatial-computing.org/_media/scw13/corrected_prooceedings-workshop-9_spatial-computing.pdf},
  booktitle = {Proceedings of the Spatial Computing Workshop (SCW 2013)},
  pages = {85--90},
  address = {Minessota, USA}
}

2012

  • DOI BibTeX
    J.C. Chaplin, N.A. Russell, N. Krasnogor
    Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates
    in Biosystems, 109(1):35-51, July 2012
    @ARTICLE{Chaplin2012,
  title = {Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates},
  author = {Chaplin, J. C. and Russell, N. A. and Krasnogor, N.},
  year = 2012,
  doi = {10.1016/j.biosystems.2011.12.005},
  month = jul,
  journal = {Biosystems},
  volume = {109},
  number = {1},
  pages = {35--51}
}
  • DOI BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, R. Schneider, A. Valencia
    EnrichNet: network-based gene set enrichment analysis
    in Bioinformatics, 28(18):i451-i457, September 2012
    @ARTICLE{Glaab2012a,
  title = {EnrichNet: network-based gene set enrichment analysis},
  author = {Glaab, E. and Baudot, A. and Krasnogor, N. and Schneider, R. and Valencia, A.},
  year = 2012,
  doi = {10.1093/bioinformatics/bts389},
  month = sep,
  journal = {Bioinformatics},
  volume = {28},
  number = {18},
  pages = {i451--i457}
}
  • DOI BibTeX
    O. Markovitch, D. Sorek, L.T. Lui, D. Lancet, N. Krasnogor
    Is There an Optimal Level of Open-Endedness in Prebiotic Evolution?
    in Origins of Life and Evolution of Biospheres, 42(5):469-474, October 2012
    @ARTICLE{Markovitch2012,
  title = {Is There an Optimal Level of Open-Endedness in Prebiotic Evolution?},
  author = {Markovitch, Omer and Sorek, Daniel and Lui, Leong Ting and Lancet, Doron and Krasnogor, Natalio},
  year = 2012,
  doi = {10.1007/s11084-012-9309-y},
  month = oct,
  journal = {Origins of Life and Evolution of Biospheres},
  volume = {42},
  number = {5},
  pages = {469--474}
}
  • DOI BibTeX
    G. Terrazas, N. Krasnogor
    Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2011), Studies in Computational Intelligence 387, p.73-84, 2012
    @INCOLLECTION{Terrazas2012,
  title = {Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles},
  author = {Terrazas, Germán and Krasnogor, Natalio},
  year = 2012,
  doi = {10.1007/978-3-642-24094-2_5},
  booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2011)},
  publisher = {Springer Berlin Heidelberg},
  volume = {387},
  series = {Studies in Computational Intelligence},
  pages = {73--84}
}

2011

  • DOI BibTeX
    S. Varier, M. Kaiser
    Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network
    in PLoS Computational Biology, 7(1):e1001044, January 2011
    @ARTICLE{Varier2011a,
  title = {Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network},
  author = {Varier, Sreedevi and Kaiser, Marcus},
  year = 2011,
  doi = {10.1371/journal.pcbi.1001044},
  month = jan,
  journal = {PLoS Computational Biology},
  volume = {7},
  number = {1},
  pages = {e1001044}
}
  • DOI BibTeX
    Y. Wang, A. Komuravelli, P. Zuliani, E.M. Clarke
    Analog circuit verification by statistical model checking
    in 16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011), p.1-6, Yokohama, Japan, January 2011
    @INPROCEEDINGS{Wang2011,
  title = {Analog circuit verification by statistical model checking},
  author = {Wang, Ying-Chih and Komuravelli, Anvesh and Zuliani, Paolo and Clarke, Edmund M.},
  year = 2011,
  doi = {10.1109/ASPDAC.2011.5722168},
  month = jan,
  booktitle = {16th Asia and South Pacific Design Automation Conference (ASP-DAC 2011)},
  pages = {1--6},
  address = {Yokohama, Japan}
}
  • DOI BibTeX
    G.W. Bassel, H. Lan, E. Glaab, D.J. Gibbs, T. Gerjets, N. Krasnogor, A.J. Bonner, M.J. Holdsworth, N.J. Provart
    Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions
    in Proceedings of the National Academy of Sciences, 108(23):9709-9714, June 2011
    @ARTICLE{Bassel2011a,
  title = {Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions},
  author = {Bassel, G. W. and Lan, H. and Glaab, E. and Gibbs, D. J. and Gerjets, T. and Krasnogor, N. and Bonner, A. J. and Holdsworth, M. J. and Provart, N. J.},
  year = 2011,
  doi = {10.1073/pnas.1100958108},
  month = jun,
  journal = {Proceedings of the National Academy of Sciences},
  volume = {108},
  number = {23},
  pages = {9709--9714}
}
  • DOI BibTeX
    H. Fellermann, S. Rasmussen
    On the Growth Rate of Non-Enzymatic Molecular Replicators
    in Entropy, 13(12):1882-1903, October 2011
    @ARTICLE{Fellermann2011,
  title = {On the Growth Rate of Non-Enzymatic Molecular Replicators},
  author = {Fellermann, Harold and Rasmussen, Steen},
  year = 2011,
  doi = {10.3390/e13101882},
  month = oct,
  journal = {Entropy},
  volume = {13},
  number = {12},
  pages = {1882--1903}
}

2010

  • DOI eprint BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, A. Valencia
    TopoGSA: network topological gene set analysis
    in Bioinformatics, 26(9):1271-1272, May 2010
    @ARTICLE{Glaab2010a,
  title = {TopoGSA: network topological gene set analysis},
  author = {Glaab, E. and Baudot, A. and Krasnogor, N. and Valencia, A.},
  year = 2010,
  doi = {10.1093/bioinformatics/btq131},
  month = may,
  journal = {Bioinformatics},
  volume = {26},
  number = {9},
  pages = {1271--1272}
}
  • DOI eprint BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Towards the Design of Heuristics by Means of Self-Assembly
    in Electronic Proceedings in Theoretical Computer Science, 26:135-146, June 2010
    @ARTICLE{Terrazas2010a,
  title = {Towards the Design of Heuristics by Means of Self-Assembly},
  author = {Terrazas, German and Landa-Silva, Dario and Krasnogor, Natalio},
  year = 2010,
  doi = {10.4204/EPTCS.26.13},
  month = jun,
  journal = {Electronic Proceedings in Theoretical Computer Science},
  volume = {26},
  pages = {135--146}
}
  • DOI eprint BibTeX
    J. Smaldon, F.J. Romero-Campero, F. Fernández Trillo, M. Gheorghe, C. Alexander, N. Krasnogor
    A computational study of liposome logic: towards cellular computing from the bottom up
    in Systems and Synthetic Biology, 4(3):157-179, September 2010
    @ARTICLE{Smaldon2010,
  title = {A computational study of liposome logic: towards cellular computing from the bottom up},
  author = {Smaldon, James and Romero-Campero, Francisco J. and Fernández Trillo, Francisco and Gheorghe, Marian and Alexander, Cameron and Krasnogor, Natalio},
  year = 2010,
  doi = {10.1007/s11693-010-9060-5},
  month = sep,
  journal = {Systems and Synthetic Biology},
  volume = {4},
  number = {3},
  pages = {157--179}
}
  • DOI BibTeX
    P. Zuliani, A. Platzer, E.M. Clarke
    Bayesian statistical model checking with application to Simulink/Stateflow verification
    in Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10, p.243, Stockholm, Sweden, 2010
    @INPROCEEDINGS{Zuliani2010,
  title = {Bayesian statistical model checking with application to Simulink/Stateflow verification},
  author = {Zuliani, Paolo and Platzer, André and Clarke, Edmund M.},
  year = 2010,
  doi = {10.1145/1755952.1755987},
  booktitle = {Proceedings of the 13th ACM international conference on Hybrid systems: computation and control - HSCC '10},
  pages = {243},
  address = {Stockholm, Sweden}
}
  • DOI BibTeX
    E. Glaab, A. Baudot, N. Krasnogor, A. Valencia
    Extending pathways and processes using molecular interaction networks to analyse cancer genome data
    in BMC Bioinformatics, 11(1):597, 2010
    @ARTICLE{Glaab2010,
  title = {Extending pathways and processes using molecular interaction networks to analyse cancer genome data},
  author = {Glaab, Enrico and Baudot, Anaïs and Krasnogor, Natalio and Valencia, Alfonso},
  year = 2010,
  doi = {10.1186/1471-2105-11-597},
  journal = {BMC Bioinformatics},
  volume = {11},
  number = {1},
  pages = {597}
}
  • DOI BibTeX
    G. Terrazas, D. Landa-Silva, N. Krasnogor
    Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics
    in Nature Inspired Cooperative Strategies for Optimization (NICSO 2010), Studies in Computational Intelligence 284, p.89-100, 2010
    @INCOLLECTION{Terrazas2010b,
  title = {Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics},
  author = {Terrazas, Germán and Landa-Silva, Dario and Krasnogor, Natalio},
  year = 2010,
  doi = {10.1007/978-3-642-12538-6_8},
  booktitle = {Nature Inspired Cooperative Strategies for Optimization (NICSO 2010)},
  publisher = {Springer Berlin Heidelberg},
  volume = {284},
  series = {Studies in Computational Intelligence},
  pages = {89--100}
}

2009

  • DOI BibTeX
    R.M. F?chslin, H. Fellermann, A. Eriksson, H. Ziock
    Coarse graining and scaling in dissipative particle dynamics
    in The Journal of Chemical Physics, 130(21):214102, June 2009
    @ARTICLE{Fuchslin2009,
  title = {Coarse graining and scaling in dissipative particle dynamics},
  author = {F?chslin, Rudolf M. and Fellermann, Harold and Eriksson, Anders and Ziock, Hans-Joachim},
  year = 2009,
  doi = {10.1063/1.3143976},
  month = jun,
  journal = {The Journal of Chemical Physics},
  volume = {130},
  number = {21},
  pages = {214102}
}
  • DOI eprint BibTeX
    L. Li, J.M. Garibaldi, N. Krasnogor
    Automated self-assembly programming paradigm: The impact of network topology
    in International Journal of Intelligent Systems, 24(7):793-817, July 2009
    @ARTICLE{Li2009,
  title = {Automated self-assembly programming paradigm: The impact of network topology},
  author = {Li, Lin and Garibaldi, Jonathan M and Krasnogor, Natalio},
  year = 2009,
  doi = {10.1002/int.20361},
  month = jul,
  journal = {International Journal of Intelligent Systems},
  volume = {24},
  number = {7},
  pages = {793--817}
}
  • DOI BibTeX
    F.J. Romero-Campero, J. Twycross, H. Cao, J. Blakes, N. Krasnogor
    A Multiscale Modeling Framework Based on P Systems
    in Membrane Computing, Lecture Notes in Computer Science 5391, p.63-77, 2009
    @INCOLLECTION{Romero-Campero2009a,
  title = {A Multiscale Modeling Framework Based on P Systems},
  author = {Romero-Campero, Francisco José and Twycross, Jamie and Cao, Hongqing and Blakes, Jonathan and Krasnogor, Natalio},
  year = 2009,
  doi = {10.1007/978-3-540-95885-7_5},
  booktitle = {Membrane Computing},
  publisher = {Springer Berlin Heidelberg},
  volume = {5391},
  series = {Lecture Notes in Computer Science},
  pages = {63--77}
}
  • DOI BibTeX
    J. Smaldon, N. Krasnogor, C. Alexander, M. Gheorghe
    Liposome logic
    in Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09, p.161, Montreal, Québec, Canada, 2009
    @INPROCEEDINGS{Smaldon2009,
  title = {Liposome logic},
  author = {Smaldon, James and Krasnogor, Natalio and Alexander, Cameron and Gheorghe, Marian},
  year = 2009,
  doi = {10.1145/1569901.1569924},
  booktitle = {Proceedings of the 11th Annual conference on Genetic and evolutionary computation - GECCO '09},
  pages = {161},
  address = {Montreal, Québec, Canada}
}

2008

  • DOI BibTeX
    J. Smaldon, J. Blakes, N. Krasnogor, D. Lancet
    A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics
    in Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08, p.249, Atlanta, GA, USA, 2008
    @INPROCEEDINGS{Smaldon2008,
  title = {A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics},
  author = {Smaldon, James and Blakes, Jonathan and Krasnogor, Natalio and Lancet, Doron},
  year = 2008,
  doi = {10.1145/1389095.1389134},
  booktitle = {Proceedings of the 10th annual conference on Genetic and evolutionary computation - GECCO '08},
  pages = {249},
  address = {Atlanta, GA, USA}
}

2007

  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor
    Quorum sensing P systems
    in Theoretical Computer Science, 371(1-2):20-33, February 2007
    @ARTICLE{Bernardini2007,
  title = {Quorum sensing P systems},
  author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio},
  year = 2007,
  doi = {10.1016/j.tcs.2006.10.012},
  month = feb,
  journal = {Theoretical Computer Science},
  volume = {371},
  number = {1-2},
  pages = {20--33}
}
  • DOI eprint BibTeX
    P. Siepmann, C.P. Martin, I. Vancea, P.J. Moriarty, N. Krasnogor
    A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems
    in Nano Letters, 7(7):1985-1990, July 2007
    @ARTICLE{Siepmann2007,
  title = {A Genetic Algorithm Approach to Probing the Evolution of Self-Organized Nanostructured Systems},
  author = {Siepmann, Peter and Martin, Christopher P. and Vancea, Ioan and Moriarty, Philip J. and Krasnogor, Natalio},
  year = 2007,
  doi = {10.1021/nl070773m},
  month = jul,
  journal = {Nano Letters},
  volume = {7},
  number = {7},
  pages = {1985--1990}
}
  • DOI BibTeX
    G. Terrazas, M. Gheorghe, G. Kendall, N. Krasnogor
    Evolving tiles for automated self-assembly design
    in 2007 IEEE Congress on Evolutionary Computation, p.2001-2008, Singapore, September 2007
    @INPROCEEDINGS{Terrazas2007,
  title = {Evolving tiles for automated self-assembly design},
  author = {Terrazas, German and Gheorghe, Marian and Kendall, Graham and Krasnogor, Natalio},
  year = 2007,
  doi = {10.1109/CEC.2007.4424719},
  month = sep,
  booktitle = {2007 IEEE Congress on Evolutionary Computation},
  pages = {2001--2008},
  address = {Singapore}
}
  • DOI BibTeX
    H. Fellermann, S. Rasmussen, H. Ziock, R.V. Sol?
    Life Cycle of a Minimal Protocell?A Dissipative Particle Dynamics Study
    in Artificial Life, 13(4):319-345, October 2007
    @ARTICLE{Fellermann2007,
  title = {Life Cycle of a Minimal Protocell?A Dissipative Particle Dynamics Study},
  author = {Fellermann, Harold and Rasmussen, Steen and Ziock, Hans-Joachim and Sol?, Ricard V.},
  year = 2007,
  doi = {10.1162/artl.2007.13.4.319},
  month = oct,
  journal = {Artificial Life},
  volume = {13},
  number = {4},
  pages = {319--345}
}
  • DOI BibTeX
    H. Fellermann, R.V. Sole
    Minimal model of self-replicating nanocells: a physically embodied information-free scenario
    in Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486):1803-1811, October 2007
    @ARTICLE{Fellermann2007a,
  title = {Minimal model of self-replicating nanocells: a physically embodied information-free scenario},
  author = {Fellermann, H. and Sole, R. V},
  year = 2007,
  doi = {10.1098/rstb.2007.2072},
  month = oct,
  journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
  volume = {362},
  number = {1486},
  pages = {1803--1811}
}

2006

  • DOI BibTeX
    L. Cronin, N. Krasnogor, B.G. Davis, C. Alexander, N. Robertson, J.H.G. Steinke, S.L.M. Schroeder, A.N. Khlobystov, G. Cooper, P.M. Gardner, P. Siepmann, B.J. Whitaker, D. Marsh
    The imitation game—a computational chemical approach to recognizing life
    in Nature Biotechnology, 24(10):1203-1206, October 2006
    @ARTICLE{Cronin2006,
  title = {The imitation game—a computational chemical approach to recognizing life},
  author = {Cronin, Leroy and Krasnogor, Natalio and Davis, Benjamin G and Alexander, Cameron and Robertson, Neil and Steinke, Joachim H G and Schroeder, Sven L M and Khlobystov, Andrei N and Cooper, Geoff and Gardner, Paul M and Siepmann, Peter and Whitaker, Benjamin J and Marsh, Dan},
  year = 2006,
  doi = {10.1038/nbt1006-1203},
  month = oct,
  journal = {Nature Biotechnology},
  volume = {24},
  number = {10},
  pages = {1203--1206}
}
  • DOI BibTeX
    G. Ochoa, G. Escuela, N. Krasnogor
    Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.247-258, 2006
    @INCOLLECTION{Ochoa2006,
  title = {Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding},
  author = {Ochoa, Gabriela and Escuela, Gabi and Krasnogor, Natalio},
  year = 2006,
  doi = {10.1007/11740698_22},
  booktitle = {Artificial Evolution},
  publisher = {Springer Berlin Heidelberg},
  volume = {3871},
  series = {Lecture Notes in Computer Science},
  pages = {247--258}
}
  • DOI eprint BibTeX
    N. Krasnogor, G. Terrazas, D.A. Pelta, G. Ochoa
    A Critical View of the Evolutionary Design of Self-assembling Systems
    in Artificial Evolution, Lecture Notes in Computer Science 3871, p.179-188, 2006
    @INCOLLECTION{Krasnogor2006,
  title = {A Critical View of the Evolutionary Design of Self-assembling Systems},
  author = {Krasnogor, Natalio and Terrazas, Graciela and Pelta, David A. and Ochoa, Gabriela},
  year = 2006,
  doi = {10.1007/11740698_16},
  booktitle = {Artificial Evolution},
  publisher = {Springer Berlin Heidelberg},
  volume = {3871},
  series = {Lecture Notes in Computer Science},
  pages = {179--188}
}

2005

  • DOI BibTeX
    G. Succi, W. Pedrycz, S. Djokic, P. Zuliani, B. Russo
    An Empirical Exploration of the Distributions of the Chidamber and Kemerer Object-Oriented Metrics Suite
    in Empirical Software Engineering, 10(1):81-104, January 2005
    @ARTICLE{Succi2005,
  title = {An Empirical Exploration of the Distributions of the Chidamber and Kemerer Object-Oriented Metrics Suite},
  author = {Succi, Giancarlo and Pedrycz, Witold and Djokic, Snezana and Zuliani, Paolo and Russo, Barbara},
  year = 2005,
  doi = {10.1023/B:EMSE.0000048324.12188.a2},
  month = jan,
  journal = {Empirical Software Engineering},
  volume = {10},
  number = {1},
  pages = {81--104}
}
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, J. Giavitto
    On Self-assembly in Population P Systems
    in Unconventional Computation, Lecture Notes in Computer Science 3699, p.46-57, 2005
    @INCOLLECTION{Bernardini2005b,
  title = {On Self-assembly in Population P Systems},
  author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Giavitto, Jean-Louis},
  year = 2005,
  doi = {10.1007/11560319_6},
  booktitle = {Unconventional Computation},
  publisher = {Springer Berlin Heidelberg},
  volume = {3699},
  series = {Lecture Notes in Computer Science},
  pages = {46--57}
}
  • DOI eprint BibTeX
    F. Bernardini, M. Gheorghe, N. Krasnogor, G. Terrazas
    Membrane Computing — Current Results and Future Problems
    in New Computational Paradigms, Lecture Notes in Computer Science 3526, p.49-53, 2005
    @INCOLLECTION{Bernardini2005a,
  title = {Membrane Computing — Current Results and Future Problems},
  author = {Bernardini, Francesco and Gheorghe, Marian and Krasnogor, Natalio and Terrazas, German},
  year = 2005,
  doi = {10.1007/11494645_6},
  booktitle = {New Computational Paradigms},
  publisher = {Springer Berlin Heidelberg},
  volume = {3526},
  series = {Lecture Notes in Computer Science},
  pages = {49--53}
}
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor, G. Kendall, M. Gheorghe
    Automated Tile Design for Self-Assembly Conformations
    in 2005 IEEE Congress on Evolutionary Computation, p.1808-1814, Edinburgh, Scotland, UK, 2005
    @INPROCEEDINGS{Terrazas2005a,
  title = {Automated Tile Design for Self-Assembly Conformations},
  author = {Terrazas, G. and Krasnogor, N. and Kendall, G. and Gheorghe, M.},
  year = 2005,
  doi = {10.1109/CEC.2005.1554907},
  booktitle = {2005 IEEE Congress on Evolutionary Computation},
  pages = {1808--1814},
  address = {Edinburgh, Scotland, UK}
}
  • DOI eprint BibTeX
    G. Terrazas, N. Krasnogor, M. Gheorghe, F. Bernardini, S. Diggle, M. Cámara
    An Environment Aware P-System Model of Quorum Sensing
    in New Computational Paradigms, Lecture Notes in Computer Science 3526, p.479-485, 2005
    @INCOLLECTION{Terrazas2005,
  title = {An Environment Aware P-System Model of Quorum Sensing},
  author = {Terrazas, German and Krasnogor, Natalio and Gheorghe, Marian and Bernardini, Francesco and Diggle, Steve and Cámara, Miguel},
  year = 2005,
  doi = {10.1007/11494645_59},
  booktitle = {New Computational Paradigms},
  publisher = {Springer Berlin Heidelberg},
  volume = {3526},
  series = {Lecture Notes in Computer Science},
  pages = {479--485}
}
  • DOI eprint BibTeX
    G. Escuela, G. Ochoa, N. Krasnogor
    Evolving L-Systems to Capture Protein Structure Native Conformations
    in Genetic Programming, Lecture Notes in Computer Science 3447, p.74-84, 2005
    @INCOLLECTION{Escuela2005,
  title = {Evolving L-Systems to Capture Protein Structure Native Conformations},
  author = {Escuela, Gabi and Ochoa, Gabriela and Krasnogor, Natalio},
  year = 2005,
  doi = {10.1007/978-3-540-31989-4_7},
  booktitle = {Genetic Programming},
  publisher = {Springer Berlin Heidelberg},
  volume = {3447},
  series = {Lecture Notes in Computer Science},
  pages = {74--84}
}

2002

  • DOI BibTeX
    P. Andras, B.G. Charlton
    Democratic deficit and communication hyper-inflation in health care systems
    in Journal of Evaluation in Clinical Practice, 8(3):291-297, August 2002
    @ARTICLE{Andras2002b,
  title = {Democratic deficit and communication hyper-inflation in health care systems},
  author = {Andras, Peter and Charlton, Bruce G.},
  year = 2002,
  doi = {10.1046/j.1365-2753.2002.00354.x},
  month = aug,
  journal = {Journal of Evaluation in Clinical Practice},
  volume = {8},
  number = {3},
  pages = {291--297}
}