[define world type (2D or 3D)]
2D

[define world size - in the form of (x, y, z) - if the world type is set to 2D then Y is forced to 1]
20, 20, 20

[define diffusion grid resolution (the target size of each subvolume in the extracellular diffusion grid, in the same units as the world size)]
2.5

[define chemical species - in the form of (chemical_id, extracellular_diffusion_rate, extracellular_degradation_rate]
0,     25, 0.013
11,    25, 0.013
110,    0, 0.0
011,    0, 0.0
1,      0, 0.0
01, 0.002, 0.0

[define chemical species which can diffuse through cell membranes]
0, 11, 01

[chemical sources - in the form of (x_position, y_position, z_position = chemical_id, rate)]
0, 0, 0 = 0, 100.0
0, 0, 0 = 11, 100.0

[define reaction_network - in the form of (reactants -> products, rate)]
11 + 0 -> 110, 0.0001
0 + 11 -> 011, 0.0001
11 + 0 + 011 -> 110 + 011, 0.05
0 + 11 + 110 -> 011 + 110, 0.05
011 + 110 -> 01 + 1 + 110, 0.05
0 + 11 + 01 -> 011 + 01, 0.5

[define population size]
100

[define colour threshold]
2.0

[define pause length before simulation starts (in milliseconds)]
0

[define camera parameters]
frames_per_second = 10
frame_interval (how many iterations between each frame) = 50
video_file_name = raf_sets.avi

[define data sample period]
1